Cow genome map
| Conread name: | Pig2-91C13 |
| Conread position: | 1-120 |
| Cow position: | chr9:9442783-9442659 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-121 |
| Cow position: | chr9:37194089-37194215 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-121 |
| Cow position: | chr9:43670187-43670062 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-139 |
| Cow position: | chr9:20578095-20577950 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-139 |
| Cow position: | chr9:62075064-62074919 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-179 |
| Cow position: | chr9:36622054-36621863 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-183 |
| Cow position: | chr9:62400989-62401183 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 68, 171 |
| Conread position: | 1-233 |
| Cow position: | chr9:44821217-44820968 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-237 |
| Cow position: | chr9:25974657-25974899 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 70 |
| Conread position: | 1-238 |
| Cow position: | chr9:54997206-54996950 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-246 |
| Cow position: | chr9:24873624-24873881 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 61, 148 |
| Conread position: | 1-248 |
| Cow position: | chr9:1983702-1983442 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 53, 8 |
| Conread position: | 1-248 |
| Cow position: | chr9:5058747-5059015 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-248 |
| Cow position: | chr9:10672007-10672267 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 1-248 |
| Cow position: | chr9:29338240-29337972 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-248 |
| Cow position: | chr9:33057115-33056850 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 230 |
| Conread position: | 1-248 |
| Cow position: | chr9:33068164-33068426 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 175 |
| Conread position: | 1-248 |
| Cow position: | chr9:49981829-49981571 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 159 |
| Conread position: | 1-250 |
| Cow position: | chr9:37168799-37168537 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 62, 156 |
| Conread position: | 1-261 |
| Cow position: | chr9:25547821-25548100 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-288 |
| Cow position: | chr9:10678597-10678909 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 156 |
| Conread position: | 1-291 |
| Cow position: | chr9:2873808-2873488 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 62, 165 |
| Conread position: | 1-291 |
| Cow position: | chr9:17061025-17061343 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 50, 191 |
| Conread position: | 1-291 |
| Cow position: | chr9:34567976-34567662 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 191 |
| Conread position: | 1-293 |
| Cow position: | chr9:13181242-13180933 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 244 |
| Conread position: | 1-293 |
| Cow position: | chr9:13472244-13472551 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 89 |
| Conread position: | 1-293 |
| Cow position: | chr9:23028697-23029004 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 68, 213 |
| Conread position: | 1-294 |
| Cow position: | chr9:217783-218105 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 64, 292 |
| Conread position: | 1-294 |
| Cow position: | chr9:5628152-5627830 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-294 |
| Cow position: | chr9:9491623-9491930 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 125 |
| Conread position: | 1-294 |
| Cow position: | chr9:13220871-13220554 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 206 |
| Conread position: | 1-294 |
| Cow position: | chr9:18110032-18109712 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 62, 293 |
| Conread position: | 1-294 |
| Cow position: | chr9:20941811-20941483 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 65, 298 |
| Conread position: | 1-294 |
| Cow position: | chr9:28702782-28702461 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 63, 288 |
| Conread position: | 1-294 |
| Cow position: | chr9:29193237-29193557 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 192 |
| Conread position: | 1-366 |
| Cow position: | chr9:12847971-12848339 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 214 |
| Conread position: | 1-455 |
| Cow position: | chr9:34553906-34554356 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 122 |
| Conread position: | 1-459 |
| Cow position: | chr9:1850319-1850804 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 143 |
| Conread position: | 1-459 |
| Cow position: | chr9:52001777-52002285 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 356 |
| Conread position: | 1-466 |
| Cow position: | chr9:28773937-28774441 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 336 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 47, 90 |
| Conread position: | 1-487 |
| Cow position: | chr9:13312890-13312352 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 103 |
| Conread position: | 2-151 |
| Cow position: | chr9:49073731-49073888 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 2-196 |
| Cow position: | chr9:29826158-29826354 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 117 |
| Conread position: | 2-232 |
| Cow position: | chr9:33999564-33999326 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 59, 198 |
| Conread position: | 2-294 |
| Cow position: | chr9:30401614-30401294 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 2-294 |
| Cow position: | chr9:62669222-62669544 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 3-121 |
| Cow position: | chr9:9817922-9818045 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 3-134 |
| Cow position: | chr9:20317755-20317619 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 129 |
| Conread position: | 3-199 |
| Cow position: | chr9:58674578-58674786 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 44 |
| Conread position: | 3-204 |
| Cow position: | chr9:15982033-15981818 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 3-248 |
| Cow position: | chr9:17633818-17633554 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 58, 172 |
| Conread position: | 3-248 |
| Cow position: | chr9:34688797-34688552 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 203, 122 |
| Conread position: | 3-288 |
| Cow position: | chr9:3806925-3806613 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 288 |
| Conread position: | 3-425 |
| Cow position: | chr9:51010873-51010411 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 57 |
| Conread position: | 4-459 |
| Cow position: | chr9:36844610-36845117 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 126 |
| Conread position: | 6-294 |
| Cow position: | chr9:2208346-2208658 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 8-294 |
| Cow position: | chr9:23005266-23005548 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 146, 56 |
| Conread position: | 16-248 |
| Cow position: | chr9:790987-791245 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 45, 157 |
| Conread position: | 22-204 |
| Cow position: | chr9:55621315-55621499 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 11 |
| Conread position: | 62-459 |
| Cow position: | chr9:9261638-9261206 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 56, 94 |
| Conread position: | 285-487 |
| Cow position: | chr9:21461475-21461266 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 80, 179 |
| Conread position: | 285-487 |
| Cow position: | chr9:26277641-26277441 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 83, 170 |
| Conread position: | 296-457 |
| Cow position: | chr9:23044451-23044283 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 71, 93 |
| Conread position: | 296-457 |
| Cow position: | chr9:59431489-59431320 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 296-459 |
| Cow position: | chr9:1998307-1998485 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 296-459 |
| Cow position: | chr9:38679106-38678938 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 296-487 |
| Cow position: | chr9:1991564-1991748 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 327-455 |
| Cow position: | chr9:64049217-64049089 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 29 |
Show alignments to all cow chromosomes.