Cow genome map

Conread name: Pig2-91C13

Conread position: 1-137
Cow position: chrX:35847466-35847326 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 129

Conread position: 1-148
Cow position: chrX:2160006-2159846 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 1-166
Cow position: chrX:27704840-27704662 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 1-189
Cow position: chrX:40365504-40365706 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 1-204
Cow position: chrX:24317063-24316845 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 54, 0

Conread position: 1-204
Cow position: chrX:30196539-30196321 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 60, 0

Conread position: 1-205
Cow position: chrX:150712-150502 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 60, 77

Conread position: 1-240
Cow position: chrX:28866771-28867032 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 178
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 1-246
Cow position: chrX:38218218-38217957 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 183
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 63, 196

Conread position: 1-247
Cow position: chrX:18455529-18455794 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 60, 0

Conread position: 1-248
Cow position: chrX:2382709-2382441 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 63, 0

Conread position: 1-248
Cow position: chrX:3417895-3418161 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 203
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 62, 0

Conread position: 1-248
Cow position: chrX:7277185-7276937 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 17, 114

Conread position: 1-248
Cow position: chrX:10438685-10438930 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 157, 57

Conread position: 1-248
Cow position: chrX:13031411-13031675 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 62, 95

Conread position: 1-248
Cow position: chrX:20792377-20792114 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 183
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 121, 51

Conread position: 1-248
Cow position: chrX:24109363-24109627 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 184
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 68, 259

Conread position: 1-248
Cow position: chrX:26508468-26508208 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 62, 103

Conread position: 1-248
Cow position: chrX:33803754-33804011 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 68, 165

Conread position: 1-248
Cow position: chrX:35024301-35024044 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 74, 59

Conread position: 1-248
Cow position: chrX:44901378-44901119 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 179
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 60, 96

Conread position: 1-248
Cow position: chrX:47380259-47380527 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 65, 245

Conread position: 1-287
Cow position: chrX:16526031-16525716 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 62, 292

Conread position: 1-288
Cow position: chrX:36839947-36839639 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 60, 235

Conread position: 1-288
Cow position: chrX:40070370-40070678 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 286

Conread position: 1-291
Cow position: chrX:29099658-29099341 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 294

Conread position: 1-291
Cow position: chrX:46296902-46296584 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 291

Conread position: 1-292
Cow position: chrX:41847289-41847607 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 1-292
Cow position: chrX:44193199-44193515 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 288

Conread position: 1-293
Cow position: chrX:10866628-10866936 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 103

Conread position: 1-293
Cow position: chrX:15140295-15140610 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 286

Conread position: 1-294
Cow position: chrX:323155-322835 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 235
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 62, 290

Conread position: 1-294
Cow position: chrX:4767931-4767618 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 281

Conread position: 1-294
Cow position: chrX:6581175-6580854 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 62, 9

Conread position: 1-294
Cow position: chrX:7096699-7096378 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 291

Conread position: 1-294
Cow position: chrX:8641029-8640707 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 233
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 62, 292

Conread position: 1-294
Cow position: chrX:11744508-11744189 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 68, 291

Conread position: 1-294
Cow position: chrX:15151434-15151745 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 234
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 127

Conread position: 1-294
Cow position: chrX:16854145-16854446 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 215
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 194, 66

Conread position: 1-294
Cow position: chrX:17054810-17054487 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 62, 290

Conread position: 1-294
Cow position: chrX:18656564-18656886 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 292

Conread position: 1-294
Cow position: chrX:20675109-20674787 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 1-294
Cow position: chrX:21343636-21343314 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 292

Conread position: 1-294
Cow position: chrX:21592532-21592212 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 233
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 60, 0

Conread position: 1-294
Cow position: chrX:22118253-22118575 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 62, 164

Conread position: 1-294
Cow position: chrX:24769616-24769937 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 55

Conread position: 1-294
Cow position: chrX:28647029-28647351 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 296

Conread position: 1-294
Cow position: chrX:28879353-28879661 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 126

Conread position: 1-294
Cow position: chrX:29288234-29287917 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 287

Conread position: 1-294
Cow position: chrX:30089805-30090123 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 228
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 61, 190

Conread position: 1-294
Cow position: chrX:30172465-30172786 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 233
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 60, 0

Conread position: 1-294
Cow position: chrX:34442201-34442509 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 129

Conread position: 1-294
Cow position: chrX:38852402-38852082 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 290

Conread position: 1-294
Cow position: chrX:42733113-42732791 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 54, 296

Conread position: 1-295
Cow position: chrX:10412734-10413055 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 225
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 65, 0

Conread position: 1-354
Cow position: chrX:45373867-45374261 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 280
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 65, 164

Conread position: 1-428
Cow position: chrX:9642191-9642679 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 292

Conread position: 1-456
Cow position: chrX:31261392-31261892 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 336
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 63, 18

Conread position: 1-457
Cow position: chrX:41304991-41305468 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 332
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 99

Conread position: 1-459
Cow position: chrX:26622581-26623087 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 351
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 95

Conread position: 1-459
Cow position: chrX:40693488-40693984 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 175

Conread position: 1-466
Cow position: chrX:11073958-11074444 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 48

Conread position: 1-486
Cow position: chrX:12346137-12345638 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 268

Conread position: 1-487
Cow position: chrX:42222532-42223059 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 134

Conread position: 2-204
Cow position: chrX:28156771-28156563 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 59, 5

Conread position: 2-248
Cow position: chrX:22308337-22308591 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 102

Conread position: 2-293
Cow position: chrX:28557601-28557287 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 64, 76

Conread position: 2-294
Cow position: chrX:4407123-4406803 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 229
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 59, 288

Conread position: 2-294
Cow position: chrX:12310149-12310466 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 163

Conread position: 2-295
Cow position: chrX:22564447-22564766 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 236
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 65, 89

Conread position: 3-133
Cow position: chrX:8144642-8144774 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 3-204
Cow position: chrX:21662275-21662065 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 165
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 113, 57

Conread position: 3-247
Cow position: chrX:1056147-1056411 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 58, 0

Conread position: 3-248
Cow position: chrX:40184312-40184048 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 194
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 58, 0

Conread position: 3-291
Cow position: chrX:22809492-22809187 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 229
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 51, 131

Conread position: 3-293
Cow position: chrX:17889621-17889931 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 140

Conread position: 3-294
Cow position: chrX:35937837-35938146 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 227
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 55, 161

Conread position: 3-294
Cow position: chrX:37080279-37080595 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 239
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 162

Conread position: 3-294
Cow position: chrX:45400778-45401082 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 225
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 30, 92

Conread position: 3-385
Cow position: chrX:38228077-38228504 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 305
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 236

Conread position: 3-385
Cow position: chrX:39556556-39556965 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 128

Conread position: 4-294
Cow position: chrX:17891784-17891463 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 237
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 58, 291

Conread position: 13-294
Cow position: chrX:39560430-39560740 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 50, 280

Conread position: 284-487
Cow position: chrX:38961942-38962151 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 84, 182

Conread position: 295-459
Cow position: chrX:16360110-16360284 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 295-467
Cow position: chrX:13415545-13415722 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 73, 0

Conread position: 296-455
Cow position: chrX:1977765-1977598 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 296-459
Cow position: chrX:2048008-2047832 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 62, 39

Conread position: 296-459
Cow position: chrX:30200096-30200269 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 53, 77

Conread position: 296-460
Cow position: chrX:20741749-20741575 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 296-487
Cow position: chrX:2560062-2560252 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 62, 9

Conread position: 296-487
Cow position: chrX:10866960-10867155 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 78, 165

Conread position: 296-487
Cow position: chrX:26618020-26617826 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 72, 164

Conread position: 296-487
Cow position: chrX:28879684-28879881 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 59, 167

Conread position: 296-487
Cow position: chrX:30286302-30286106 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 12, 27

Conread position: 299-459
Cow position: chrX:4767592-4767421 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 56, 0

Show alignments to all cow chromosomes.