Cow genome map
| Conread name: | Pig3-SRG8001B15 |
| Conread position: | 363-653 |
| Cow position: | chr1:102753752-102754056 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 8, 22 |
| Conread position: | 365-655 |
| Cow position: | chr1:35162309-35162613 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 8, 85 |
| Conread position: | 366-607 |
| Cow position: | chr1:36874915-36875171 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 44, 149 |
| Conread position: | 370-538 |
| Cow position: | chr1:55089147-55088982 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 372-526 |
| Cow position: | chr1:24445720-24445567 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 372-591 |
| Cow position: | chr1:94261450-94261664 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 73, 27 |
| Conread position: | 372-598 |
| Cow position: | chr1:21955464-21955239 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 58, 41 |
| Conread position: | 372-600 |
| Cow position: | chr1:85550170-85549942 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 372-607 |
| Cow position: | chr1:71079050-71078812 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 99, 42 |
| Conread position: | 372-625 |
| Cow position: | chr1:11729089-11729344 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 99, 45 |
| Conread position: | 372-653 |
| Cow position: | chr1:70434911-70435192 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 373-653 |
| Cow position: | chr1:69539606-69539891 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 98, 41 |
| Conread position: | 374-673 |
| Cow position: | chr1:81290417-81290729 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 54 |
| Conread position: | 375-603 |
| Cow position: | chr1:48769714-48769942 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 70, 39 |
| Conread position: | 375-607 |
| Cow position: | chr1:45223488-45223726 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 380-648 |
| Cow position: | chr1:59147426-59147158 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 34, 55 |
| Conread position: | 382-550 |
| Cow position: | chr1:98310986-98311157 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 382-556 |
| Cow position: | chr1:4374421-4374246 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 382-559 |
| Cow position: | chr1:53425093-53425271 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 62, 37 |
| Conread position: | 382-569 |
| Cow position: | chr1:63434888-63434701 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 382-569 |
| Cow position: | chr1:92433918-92434104 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 382-572 |
| Cow position: | chr1:26702289-26702099 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 123 |
| Conread position: | 382-588 |
| Cow position: | chr1:30418120-30417922 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 70, 32 |
| Conread position: | 382-590 |
| Cow position: | chr1:28176927-28177132 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 37, 45 |
| Conread position: | 382-599 |
| Cow position: | chr1:78697852-78697636 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 382-599 |
| Cow position: | chr1:79165167-79164946 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 32, 130 |
| Conread position: | 382-603 |
| Cow position: | chr1:65103537-65103757 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 382-610 |
| Cow position: | chr1:19885301-19885526 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 382-611 |
| Cow position: | chr1:54258482-54258715 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 382-611 |
| Cow position: | chr1:71119434-71119667 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 172 |
| Conread position: | 382-611 |
| Cow position: | chr1:72813532-72813765 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 382-612 |
| Cow position: | chr1:97938887-97939105 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 179, 37 |
| Conread position: | 382-620 |
| Cow position: | chr1:4291078-4291322 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 35, 57 |
| Conread position: | 382-622 |
| Cow position: | chr1:102349836-102349589 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 382-639 |
| Cow position: | chr1:31272523-31272261 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 92, 30 |
| Conread position: | 382-652 |
| Cow position: | chr1:7739872-7740148 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 382-653 |
| Cow position: | chr1:6166160-6166438 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 35, 111 |
| Conread position: | 382-653 |
| Cow position: | chr1:20667824-20667544 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 31 |
| Conread position: | 382-653 |
| Cow position: | chr1:68619015-68618733 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 382-653 |
| Cow position: | chr1:72035007-72034722 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 25, 50 |
| Conread position: | 382-653 |
| Cow position: | chr1:91066235-91065951 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 89, 141 |
| Conread position: | 382-653 |
| Cow position: | chr1:100551887-100552172 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 382-654 |
| Cow position: | chr1:5579972-5580239 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 126 |
| Conread position: | 382-659 |
| Cow position: | chr1:44506886-44507180 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 32, 61 |
| Conread position: | 382-660 |
| Cow position: | chr1:78079638-78079937 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 382-665 |
| Cow position: | chr1:69695074-69694788 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 382-673 |
| Cow position: | chr1:51445798-51446108 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 60 |
| Conread position: | 382-673 |
| Cow position: | chr1:54156814-54156508 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 382-673 |
| Cow position: | chr1:81228420-81228109 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 383-537 |
| Cow position: | chr1:1165519-1165671 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 36 |
| Conread position: | 383-570 |
| Cow position: | chr1:45288953-45288765 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 88, 57 |
| Conread position: | 383-599 |
| Cow position: | chr1:3815772-3815548 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 383-652 |
| Cow position: | chr1:72731956-72732222 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 205 |
| Conread position: | 386-591 |
| Cow position: | chr1:86340552-86340339 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 122 |
| Conread position: | 386-613 |
| Cow position: | chr1:77892064-77892289 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 386-653 |
| Cow position: | chr1:72105333-72105606 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 386-661 |
| Cow position: | chr1:101634626-101634912 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 25, 221 |
| Conread position: | 388-600 |
| Cow position: | chr1:91811705-91811917 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 389-655 |
| Cow position: | chr1:29935456-29935182 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 44 |
| Conread position: | 415-618 |
| Cow position: | chr1:86578917-86579117 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 416-536 |
| Cow position: | chr1:101551414-101551534 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 425-653 |
| Cow position: | chr1:528112-527877 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 183, 136 |
| Conread position: | 426-603 |
| Cow position: | chr1:82942243-82942423 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 426-603 |
| Cow position: | chr1:82944315-82944135 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 426-618 |
| Cow position: | chr1:92684735-92684536 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 427-611 |
| Cow position: | chr1:63530517-63530705 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 15, 175 |
| Conread position: | 429-596 |
| Cow position: | chr1:71916156-71915984 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 42, 63 |
| Conread position: | 437-540 |
| Cow position: | chr1:26159274-26159171 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 437-655 |
| Cow position: | chr1:47402499-47402713 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 112 |
| Conread position: | 438-653 |
| Cow position: | chr1:36998158-36998388 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 439-611 |
| Cow position: | chr1:8624476-8624299 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 440-652 |
| Cow position: | chr1:95676315-95676105 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 120, 147 |
| Conread position: | 440-653 |
| Cow position: | chr1:38205448-38205657 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 132 |
| Conread position: | 443-565 |
| Cow position: | chr1:26943285-26943409 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 443-569 |
| Cow position: | chr1:39121859-39121732 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 70 |
| Conread position: | 443-611 |
| Cow position: | chr1:87095237-87095065 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 444-653 |
| Cow position: | chr1:52496750-52496974 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 124, 78 |
| Conread position: | 444-673 |
| Cow position: | chr1:42138836-42139063 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 156 |
| Conread position: | 446-655 |
| Cow position: | chr1:99570507-99570290 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 447-590 |
| Cow position: | chr1:102494871-102495008 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 41 |
| Conread position: | 448-613 |
| Cow position: | chr1:65638897-65639061 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 112, 45 |
| Conread position: | 448-653 |
| Cow position: | chr1:242539-242758 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 462-655 |
| Cow position: | chr1:100852705-100852911 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 485-661 |
| Cow position: | chr1:42353181-42353358 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 134, 27 |
Show alignments to all cow chromosomes.