Cow genome map
| Conread name: | Pig3-SRG8001B15 |
| Conread position: | 363-649 |
| Cow position: | chr11:36658947-36658661 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 10, 75 |
| Conread position: | 367-626 |
| Cow position: | chr11:14466610-14466346 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 372-598 |
| Cow position: | chr11:40573449-40573223 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 99, 128 |
| Conread position: | 372-599 |
| Cow position: | chr11:16907160-16906937 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 372-600 |
| Cow position: | chr11:71492971-71492747 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 99, 41 |
| Conread position: | 372-608 |
| Cow position: | chr11:83066378-83066613 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 372-648 |
| Cow position: | chr11:21844249-21843960 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 372-657 |
| Cow position: | chr11:13499900-13500199 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 102 |
| Conread position: | 372-659 |
| Cow position: | chr11:31413337-31413647 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 372-659 |
| Cow position: | chr11:64107626-64107328 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 100, 44 |
| Conread position: | 372-661 |
| Cow position: | chr11:19247312-19247013 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 99, 58 |
| Conread position: | 372-661 |
| Cow position: | chr11:37974809-37975111 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 372-671 |
| Cow position: | chr11:76369637-76369328 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 374-567 |
| Cow position: | chr11:51144601-51144793 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 380-653 |
| Cow position: | chr11:42083363-42083637 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 382-537 |
| Cow position: | chr11:30596881-30597042 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 382-542 |
| Cow position: | chr11:42003050-42002894 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 382-569 |
| Cow position: | chr11:52983570-52983757 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 382-580 |
| Cow position: | chr11:1362582-1362373 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 382-597 |
| Cow position: | chr11:77705649-77705862 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 54 |
| Conread position: | 382-598 |
| Cow position: | chr11:52690628-52690407 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 35, 131 |
| Conread position: | 382-599 |
| Cow position: | chr11:7590087-7590302 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 382-599 |
| Cow position: | chr11:61958851-61958631 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 382-607 |
| Cow position: | chr11:70756375-70756602 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 89, 105 |
| Conread position: | 382-613 |
| Cow position: | chr11:27932164-27932410 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 124 |
| Conread position: | 382-616 |
| Cow position: | chr11:77128552-77128791 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 382-619 |
| Cow position: | chr11:70278214-70277978 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 179, 37 |
| Conread position: | 382-648 |
| Cow position: | chr11:63920155-63919888 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 382-652 |
| Cow position: | chr11:30830722-30830440 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 382-652 |
| Cow position: | chr11:34145021-34144765 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 382-653 |
| Cow position: | chr11:26144202-26143915 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 89, 71 |
| Conread position: | 382-653 |
| Cow position: | chr11:33348290-33348015 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 382-654 |
| Cow position: | chr11:75874858-75874587 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 382-655 |
| Cow position: | chr11:38334420-38334707 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 382-661 |
| Cow position: | chr11:68913036-68913335 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 382-672 |
| Cow position: | chr11:23251698-23251398 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 383-528 |
| Cow position: | chr11:2811836-2811690 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 383-601 |
| Cow position: | chr11:40478955-40478739 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 383-648 |
| Cow position: | chr11:51729183-51729453 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 383-652 |
| Cow position: | chr11:41077-41353 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 100, 21 |
| Conread position: | 383-653 |
| Cow position: | chr11:38639014-38639283 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 175, 36 |
| Conread position: | 384-580 |
| Cow position: | chr11:12111559-12111364 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 118 |
| Conread position: | 384-608 |
| Cow position: | chr11:80413116-80412888 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 91, 46 |
| Conread position: | 386-589 |
| Cow position: | chr11:5031876-5031673 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 43 |
| Conread position: | 386-653 |
| Cow position: | chr11:43360885-43360603 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 388-529 |
| Cow position: | chr11:22932079-22931930 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 388-567 |
| Cow position: | chr11:60143405-60143224 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 388-653 |
| Cow position: | chr11:30210806-30211069 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 394-653 |
| Cow position: | chr11:46746537-46746820 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 415-673 |
| Cow position: | chr11:47837251-47837508 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 416-618 |
| Cow position: | chr11:82289509-82289711 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 85 |
| Conread position: | 426-653 |
| Cow position: | chr11:13040234-13040004 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 426-655 |
| Cow position: | chr11:72870833-72871083 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 430-653 |
| Cow position: | chr11:40459050-40459289 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 41, 7 |
| Conread position: | 437-599 |
| Cow position: | chr11:69307461-69307627 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 438-653 |
| Cow position: | chr11:64104948-64105177 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 122, 66 |
| Conread position: | 440-662 |
| Cow position: | chr11:27907733-27907963 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 443-617 |
| Cow position: | chr11:5201698-5201523 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 142 |
| Conread position: | 447-625 |
| Cow position: | chr11:34467529-34467713 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 115, 52 |
| Conread position: | 451-611 |
| Cow position: | chr11:37436024-37435863 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 118, 8 |
| Conread position: | 453-603 |
| Cow position: | chr11:58938781-58938629 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 458-613 |
| Cow position: | chr11:5789931-5789772 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 470-591 |
| Cow position: | chr11:84775056-84775179 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 471-611 |
| Cow position: | chr11:12555323-12555180 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 487-599 |
| Cow position: | chr11:56895976-56895862 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 491-599 |
| Cow position: | chr11:60470195-60470085 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.