Cow genome map
| Conread name: | Pig3-SRG8001B15 |
| Conread position: | 366-599 |
| Cow position: | chr12:7000748-7000512 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 7, 79 |
| Conread position: | 366-611 |
| Cow position: | chr12:42879551-42879801 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 7, 48 |
| Conread position: | 366-634 |
| Cow position: | chr12:33323639-33323357 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 366-655 |
| Cow position: | chr12:38774383-38774081 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 54 |
| Conread position: | 372-529 |
| Cow position: | chr12:12178785-12178943 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 76, 92 |
| Conread position: | 372-536 |
| Cow position: | chr12:20326637-20326801 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 372-593 |
| Cow position: | chr12:6241175-6241406 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 372-625 |
| Cow position: | chr12:9914652-9914910 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 373-613 |
| Cow position: | chr12:2711360-2711601 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 373-618 |
| Cow position: | chr12:30919281-30919535 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 41, 220 |
| Conread position: | 378-646 |
| Cow position: | chr12:24116494-24116218 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 378-661 |
| Cow position: | chr12:37008836-37008551 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 381-616 |
| Cow position: | chr12:14131891-14131660 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 382-598 |
| Cow position: | chr12:40910416-40910194 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 53 |
| Conread position: | 382-608 |
| Cow position: | chr12:19400937-19400717 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 91, 14 |
| Conread position: | 382-613 |
| Cow position: | chr12:8943345-8943119 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 49, 17 |
| Conread position: | 382-620 |
| Cow position: | chr12:5800908-5801158 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 382-623 |
| Cow position: | chr12:3623567-3623818 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 382-623 |
| Cow position: | chr12:35368514-35368757 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 89, 230 |
| Conread position: | 382-623 |
| Cow position: | chr12:42162912-42163153 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 32, 136 |
| Conread position: | 382-645 |
| Cow position: | chr12:31429697-31429438 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 382-649 |
| Cow position: | chr12:37732911-37732638 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 382-653 |
| Cow position: | chr12:1889707-1889418 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 382-653 |
| Cow position: | chr12:34161289-34161565 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 383-615 |
| Cow position: | chr12:44595937-44595703 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 386-644 |
| Cow position: | chr12:18766101-18765835 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 386-653 |
| Cow position: | chr12:14222853-14223145 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 386-653 |
| Cow position: | chr12:34466130-34465856 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 386-667 |
| Cow position: | chr12:19715163-19714885 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 45 |
| Conread position: | 388-653 |
| Cow position: | chr12:33976079-33976365 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 388-670 |
| Cow position: | chr12:9767001-9766702 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 389-603 |
| Cow position: | chr12:4341860-4341645 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 82, 24 |
| Conread position: | 391-655 |
| Cow position: | chr12:18572511-18572771 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 168, 83 |
| Conread position: | 392-578 |
| Cow position: | chr12:46314820-46314632 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 433-653 |
| Cow position: | chr12:4594423-4594661 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 433-653 |
| Cow position: | chr12:6687816-6688047 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 39, 154 |
| Conread position: | 433-661 |
| Cow position: | chr12:25805207-25804976 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 437-672 |
| Cow position: | chr12:7902878-7902626 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 37, 236 |
| Conread position: | 438-575 |
| Cow position: | chr12:17716998-17717129 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 443-544 |
| Cow position: | chr12:7086093-7086194 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 443-611 |
| Cow position: | chr12:11860633-11860803 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 148 |
| Conread position: | 443-659 |
| Cow position: | chr12:6754129-6754356 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 444-655 |
| Cow position: | chr12:6188180-6187945 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 455-653 |
| Cow position: | chr12:43974238-43974454 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 16, 47 |
| Conread position: | 465-664 |
| Cow position: | chr12:48578798-48579007 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 7, 123 |
| Conread position: | 477-613 |
| Cow position: | chr12:27430474-27430614 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.