Cow genome map
| Conread name: | Pig3-SRG8001B15 |
| Conread position: | 371-611 |
| Cow position: | chr13:55674124-55674364 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 372-591 |
| Cow position: | chr13:3989287-3989066 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 62 |
| Conread position: | 372-602 |
| Cow position: | chr13:43184788-43185030 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 38, 64 |
| Conread position: | 372-648 |
| Cow position: | chr13:19393374-19393087 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 99, 58 |
| Conread position: | 372-658 |
| Cow position: | chr13:18166817-18166513 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 36, 55 |
| Conread position: | 373-603 |
| Cow position: | chr13:2414111-2413881 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 373-607 |
| Cow position: | chr13:20473599-20473833 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 101, 69 |
| Conread position: | 381-565 |
| Cow position: | chr13:8524541-8524728 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 382-520 |
| Cow position: | chr13:16024664-16024525 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 382-579 |
| Cow position: | chr13:46112040-46111843 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 47 |
| Conread position: | 382-588 |
| Cow position: | chr13:43762243-43762034 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 382-599 |
| Cow position: | chr13:38872878-38873090 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 92, 37 |
| Conread position: | 382-600 |
| Cow position: | chr13:9142358-9142134 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 382-603 |
| Cow position: | chr13:15041400-15041621 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 382-603 |
| Cow position: | chr13:17158801-17159028 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 382-611 |
| Cow position: | chr13:24230283-24230055 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 382-618 |
| Cow position: | chr13:42229393-42229148 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 12, 138 |
| Conread position: | 382-630 |
| Cow position: | chr13:37640658-37640413 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 382-652 |
| Cow position: | chr13:5758267-5758545 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 30, 58 |
| Conread position: | 382-652 |
| Cow position: | chr13:40491287-40491004 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 41, 54 |
| Conread position: | 382-653 |
| Cow position: | chr13:15192816-15193103 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 382-653 |
| Cow position: | chr13:19882962-19883248 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 382-653 |
| Cow position: | chr13:24715317-24715035 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 382-654 |
| Cow position: | chr13:17622355-17622089 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 89, 31 |
| Conread position: | 382-655 |
| Cow position: | chr13:29831363-29831643 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 157, 37 |
| Conread position: | 382-672 |
| Cow position: | chr13:7149302-7149004 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 383-591 |
| Cow position: | chr13:11591820-11591612 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 383-599 |
| Cow position: | chr13:36771347-36771565 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 31, 67 |
| Conread position: | 386-655 |
| Cow position: | chr13:23512436-23512164 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 387-661 |
| Cow position: | chr13:17745314-17745036 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 388-591 |
| Cow position: | chr13:39368027-39367821 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 388-616 |
| Cow position: | chr13:13765853-13765628 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 28, 43 |
| Conread position: | 394-596 |
| Cow position: | chr13:17838011-17837806 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 395-580 |
| Cow position: | chr13:25428167-25428350 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 432-599 |
| Cow position: | chr13:42640406-42640240 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 128, 11 |
| Conread position: | 437-653 |
| Cow position: | chr13:8233019-8232804 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 437-671 |
| Cow position: | chr13:12925796-12925566 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 441-653 |
| Cow position: | chr13:7149496-7149713 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 441-655 |
| Cow position: | chr13:9707733-9707963 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 33, 102 |
| Conread position: | 443-648 |
| Cow position: | chr13:15069971-15069763 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 443-669 |
| Cow position: | chr13:18197595-18197837 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 107, 116 |
| Conread position: | 443-670 |
| Cow position: | chr13:15997048-15996803 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 444-653 |
| Cow position: | chr13:4552827-4552612 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 445-572 |
| Cow position: | chr13:6342077-6342205 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 446-661 |
| Cow position: | chr13:52640937-52641173 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 470-597 |
| Cow position: | chr13:39398637-39398508 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 90, 125 |
| Conread position: | 470-655 |
| Cow position: | chr13:29802603-29802411 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 81 |
| Conread position: | 479-651 |
| Cow position: | chr13:16790186-16790013 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 133 |
Show alignments to all cow chromosomes.