Cow genome map
| Conread name: | Pig3-SRG8001B15 |
| Conread position: | 365-611 |
| Cow position: | chr15:32324011-32324259 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 12, 74 |
| Conread position: | 372-600 |
| Cow position: | chr15:7430164-7429926 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 71, 43 |
| Conread position: | 372-608 |
| Cow position: | chr15:40379399-40379164 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 372-651 |
| Cow position: | chr15:39326327-39326610 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 76, 202 |
| Conread position: | 373-559 |
| Cow position: | chr15:6657283-6657100 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 373-655 |
| Cow position: | chr15:10088504-10088206 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 382-559 |
| Cow position: | chr15:23768087-23768256 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 89, 46 |
| Conread position: | 382-572 |
| Cow position: | chr15:12655737-12655929 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 382-598 |
| Cow position: | chr15:50341298-50341082 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 121 |
| Conread position: | 382-599 |
| Cow position: | chr15:21893959-21893737 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 54 |
| Conread position: | 382-606 |
| Cow position: | chr15:44658534-44658312 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 382-608 |
| Cow position: | chr15:32979862-32980083 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 31 |
| Conread position: | 382-611 |
| Cow position: | chr15:4295942-4295708 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 382-613 |
| Cow position: | chr15:33976511-33976751 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 89, 61 |
| Conread position: | 382-621 |
| Cow position: | chr15:5726501-5726265 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 89, 66 |
| Conread position: | 382-626 |
| Cow position: | chr15:39316660-39316910 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 33, 242 |
| Conread position: | 382-639 |
| Cow position: | chr15:35112704-35112970 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 382-646 |
| Cow position: | chr15:4508326-4508065 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 187 |
| Conread position: | 382-653 |
| Cow position: | chr15:4178759-4179050 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 382-653 |
| Cow position: | chr15:16112577-16112283 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 382-653 |
| Cow position: | chr15:37931584-37931846 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 382-653 |
| Cow position: | chr15:46563315-46563588 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 176, 9 |
| Conread position: | 382-653 |
| Cow position: | chr15:49274129-49273851 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 382-653 |
| Cow position: | chr15:50322773-50322500 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 382-655 |
| Cow position: | chr15:19771309-19771023 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 89, 31 |
| Conread position: | 382-664 |
| Cow position: | chr15:36793315-36793614 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 382-668 |
| Cow position: | chr15:9107213-9106920 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 89, 229 |
| Conread position: | 383-657 |
| Cow position: | chr15:225629-225918 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 386-591 |
| Cow position: | chr15:35204975-35205186 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 386-599 |
| Cow position: | chr15:5044309-5044517 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 174, 28 |
| Conread position: | 386-653 |
| Cow position: | chr15:4418229-4418513 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 388-593 |
| Cow position: | chr15:6970160-6969958 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 388-616 |
| Cow position: | chr15:45584895-45584674 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 172, 11 |
| Conread position: | 388-638 |
| Cow position: | chr15:34140157-34139895 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 97, 86 |
| Conread position: | 388-659 |
| Cow position: | chr15:1857898-1857609 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 391-652 |
| Cow position: | chr15:14988158-14987885 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 394-600 |
| Cow position: | chr15:14176334-14176542 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 402-654 |
| Cow position: | chr15:21903250-21903519 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 423-643 |
| Cow position: | chr15:23925989-23925766 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 5, 185 |
| Conread position: | 423-651 |
| Cow position: | chr15:32234199-32234421 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 426-611 |
| Cow position: | chr15:39405876-39405691 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 433-653 |
| Cow position: | chr15:38846029-38845813 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 38, 154 |
| Conread position: | 437-598 |
| Cow position: | chr15:37205172-37205005 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 437-603 |
| Cow position: | chr15:31637425-31637256 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 33, 152 |
| Conread position: | 437-654 |
| Cow position: | chr15:19553794-19554038 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 437-655 |
| Cow position: | chr15:9979225-9978990 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 10, 92 |
| Conread position: | 437-661 |
| Cow position: | chr15:10231626-10231862 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 440-608 |
| Cow position: | chr15:13554229-13554058 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 440-671 |
| Cow position: | chr15:5408785-5409023 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 31, 56 |
| Conread position: | 443-630 |
| Cow position: | chr15:22984692-22984508 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 117, 31 |
| Conread position: | 443-655 |
| Cow position: | chr15:31495106-31495331 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 445-653 |
| Cow position: | chr15:36952088-36952310 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 66 |
Show alignments to all cow chromosomes.