Cow genome map
| Conread name: | Pig3-SRG8001B15 |
| Conread position: | 363-567 |
| Cow position: | chr17:25718043-25718240 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 108, 63 |
| Conread position: | 366-600 |
| Cow position: | chr17:21434792-21434558 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 7, 72 |
| Conread position: | 371-611 |
| Cow position: | chr17:24883626-24883389 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 100, 48 |
| Conread position: | 372-537 |
| Cow position: | chr17:18860780-18860614 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 372-546 |
| Cow position: | chr17:28539972-28540144 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 372-559 |
| Cow position: | chr17:36275280-36275462 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 372-572 |
| Cow position: | chr17:29026010-29026215 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 42, 67 |
| Conread position: | 372-589 |
| Cow position: | chr17:979213-979007 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 97, 47 |
| Conread position: | 372-598 |
| Cow position: | chr17:8544250-8544476 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 372-611 |
| Cow position: | chr17:21973191-21972946 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 372-615 |
| Cow position: | chr17:20993097-20992852 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 42, 115 |
| Conread position: | 372-652 |
| Cow position: | chr17:20884465-20884765 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 47, 55 |
| Conread position: | 372-654 |
| Cow position: | chr17:908687-908981 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 172, 9 |
| Conread position: | 372-673 |
| Cow position: | chr17:27058613-27058305 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 373-654 |
| Cow position: | chr17:20335608-20335888 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 46 |
| Conread position: | 377-599 |
| Cow position: | chr17:10458990-10458760 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 40, 54 |
| Conread position: | 379-599 |
| Cow position: | chr17:26802989-26802768 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 78 |
| Conread position: | 379-655 |
| Cow position: | chr17:23280908-23280614 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 381-672 |
| Cow position: | chr17:14050252-14049949 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 33 |
| Conread position: | 382-572 |
| Cow position: | chr17:8690489-8690309 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 382-586 |
| Cow position: | chr17:21680717-21680938 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 32, 145 |
| Conread position: | 382-586 |
| Cow position: | chr17:39857346-39857544 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 56 |
| Conread position: | 382-590 |
| Cow position: | chr17:10432024-10431810 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 382-599 |
| Cow position: | chr17:8079269-8079484 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 382-599 |
| Cow position: | chr17:27203091-27202876 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 382-600 |
| Cow position: | chr17:21755477-21755261 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 87, 37 |
| Conread position: | 382-607 |
| Cow position: | chr17:36864583-36864808 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 382-608 |
| Cow position: | chr17:1466477-1466236 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 105 |
| Conread position: | 382-608 |
| Cow position: | chr17:9911717-9911938 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 382-611 |
| Cow position: | chr17:17180002-17180227 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 382-611 |
| Cow position: | chr17:25189240-25189471 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 382-616 |
| Cow position: | chr17:4213698-4213929 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 38 |
| Conread position: | 382-621 |
| Cow position: | chr17:20780463-20780707 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 31 |
| Conread position: | 382-648 |
| Cow position: | chr17:11296592-11296875 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 32, 214 |
| Conread position: | 382-650 |
| Cow position: | chr17:2275427-2275686 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 90, 39 |
| Conread position: | 382-652 |
| Cow position: | chr17:6423713-6423994 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 48 |
| Conread position: | 382-653 |
| Cow position: | chr17:923830-924091 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 382-653 |
| Cow position: | chr17:21489671-21489393 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 382-653 |
| Cow position: | chr17:32349025-32349304 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 382-654 |
| Cow position: | chr17:32027503-32027205 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 382-655 |
| Cow position: | chr17:25126304-25126587 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 70, 37 |
| Conread position: | 382-657 |
| Cow position: | chr17:27429528-27429803 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 382-658 |
| Cow position: | chr17:7142818-7143104 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 382-670 |
| Cow position: | chr17:13244088-13243796 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 382-673 |
| Cow position: | chr17:25916849-25917146 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 65, 39 |
| Conread position: | 382-673 |
| Cow position: | chr17:40771789-40772081 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 383-653 |
| Cow position: | chr17:16616772-16617041 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 65, 17 |
| Conread position: | 386-596 |
| Cow position: | chr17:22057066-22056859 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 386-652 |
| Cow position: | chr17:13922435-13922722 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 386-673 |
| Cow position: | chr17:14652824-14652524 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 388-612 |
| Cow position: | chr17:40289037-40288814 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 388-648 |
| Cow position: | chr17:6936717-6936442 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 80, 101 |
| Conread position: | 392-641 |
| Cow position: | chr17:29472428-29472686 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 402-607 |
| Cow position: | chr17:27440145-27440358 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 89 |
| Conread position: | 415-611 |
| Cow position: | chr17:9940675-9940884 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 420-656 |
| Cow position: | chr17:25169066-25169294 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 135 |
| Conread position: | 422-618 |
| Cow position: | chr17:11281109-11280909 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 434-652 |
| Cow position: | chr17:32333088-32332852 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 436-607 |
| Cow position: | chr17:1463325-1463151 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 437-673 |
| Cow position: | chr17:20072088-20071842 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 123, 34 |
| Conread position: | 438-567 |
| Cow position: | chr17:29363353-29363223 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 440-617 |
| Cow position: | chr17:31481036-31480851 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 31, 128 |
| Conread position: | 441-552 |
| Cow position: | chr17:25077755-25077645 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 442-580 |
| Cow position: | chr17:4833517-4833376 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 442-652 |
| Cow position: | chr17:20929252-20929484 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 442-652 |
| Cow position: | chr17:25473268-25473041 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 443-661 |
| Cow position: | chr17:29084186-29084416 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 146 |
| Conread position: | 443-672 |
| Cow position: | chr17:20905087-20904847 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 446-600 |
| Cow position: | chr17:31990948-31991103 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 139 |
| Conread position: | 447-655 |
| Cow position: | chr17:21709917-21709703 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 145 |
| Conread position: | 473-646 |
| Cow position: | chr17:10414541-10414727 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 477-599 |
| Cow position: | chr17:19898937-19899065 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 477-653 |
| Cow position: | chr17:3364636-3364830 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 477-660 |
| Cow position: | chr17:11985831-11985638 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 498-655 |
| Cow position: | chr17:30108507-30108673 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 77 |
Show alignments to all cow chromosomes.