Cow genome map
| Conread name: | Pig3-SRG8001B15 |
| Conread position: | 366-608 |
| Cow position: | chr29:2984781-2985025 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 157 |
| Conread position: | 366-653 |
| Cow position: | chr29:24624143-24624440 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 86 |
| Conread position: | 372-603 |
| Cow position: | chr29:6844728-6844499 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 129, 54 |
| Conread position: | 372-611 |
| Cow position: | chr29:41530747-41530990 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 372-614 |
| Cow position: | chr29:28166313-28166080 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 372-653 |
| Cow position: | chr29:11434023-11434311 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 100, 28 |
| Conread position: | 378-671 |
| Cow position: | chr29:1229514-1229801 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 379-537 |
| Cow position: | chr29:13486856-13487015 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 65 |
| Conread position: | 382-572 |
| Cow position: | chr29:17154677-17154878 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 136 |
| Conread position: | 382-578 |
| Cow position: | chr29:27873514-27873709 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 178, 39 |
| Conread position: | 382-600 |
| Cow position: | chr29:13639460-13639236 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 382-600 |
| Cow position: | chr29:22175597-22175812 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 382-611 |
| Cow position: | chr29:17297044-17297277 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 23, 78 |
| Conread position: | 382-630 |
| Cow position: | chr29:13028347-13028598 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 382-653 |
| Cow position: | chr29:4520245-4520529 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 382-653 |
| Cow position: | chr29:6337571-6337849 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 36, 40 |
| Conread position: | 382-653 |
| Cow position: | chr29:19428569-19428849 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 382-659 |
| Cow position: | chr29:25092022-25092310 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 382-661 |
| Cow position: | chr29:16657600-16657899 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 163 |
| Conread position: | 383-590 |
| Cow position: | chr29:6293563-6293359 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 88, 31 |
| Conread position: | 383-611 |
| Cow position: | chr29:4120759-4120995 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 58 |
| Conread position: | 383-653 |
| Cow position: | chr29:35291999-35292285 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 384-618 |
| Cow position: | chr29:12784044-12783817 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 87, 30 |
| Conread position: | 386-537 |
| Cow position: | chr29:2071659-2071507 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 386-608 |
| Cow position: | chr29:22068832-22068605 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 31, 61 |
| Conread position: | 388-600 |
| Cow position: | chr29:11647005-11647224 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 391-588 |
| Cow position: | chr29:8005004-8004809 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 49 |
| Conread position: | 392-625 |
| Cow position: | chr29:44988862-44988638 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 216, 38 |
| Conread position: | 394-618 |
| Cow position: | chr29:36220448-36220680 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 223 |
| Conread position: | 415-618 |
| Cow position: | chr29:5995151-5994950 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 416-653 |
| Cow position: | chr29:26540594-26540341 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 433-599 |
| Cow position: | chr29:23115042-23114871 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 437-657 |
| Cow position: | chr29:28195553-28195330 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 8, 59 |
| Conread position: | 437-661 |
| Cow position: | chr29:35501691-35501459 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 37, 148 |
| Conread position: | 438-611 |
| Cow position: | chr29:32733263-32733434 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 138 |
| Conread position: | 440-672 |
| Cow position: | chr29:42630087-42630336 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 441-653 |
| Cow position: | chr29:31981798-31982020 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 31, 216 |
| Conread position: | 442-590 |
| Cow position: | chr29:43544634-43544483 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 442-653 |
| Cow position: | chr29:8686298-8686509 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 29, 133 |
| Conread position: | 443-607 |
| Cow position: | chr29:40791279-40791440 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 443-652 |
| Cow position: | chr29:22167109-22166889 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 129 |
| Conread position: | 445-655 |
| Cow position: | chr29:396384-396603 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 58 |
| Conread position: | 445-671 |
| Cow position: | chr29:18450164-18449921 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 124, 32 |
| Conread position: | 453-599 |
| Cow position: | chr29:42444586-42444727 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 461-672 |
| Cow position: | chr29:36781317-36781092 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 474-655 |
| Cow position: | chr29:19187027-19187227 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 484-618 |
| Cow position: | chr29:8799004-8798871 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 76, 118 |
| Conread position: | 516-673 |
| Cow position: | chr29:32963580-32963739 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 144 |
Show alignments to all cow chromosomes.