Cow genome map
| Conread name: | Pig3-SRG8001B15 |
| Conread position: | 366-655 |
| Cow position: | chr4:34369564-34369271 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 50, 263 |
| Conread position: | 371-671 |
| Cow position: | chr4:34166084-34165785 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 43, 106 |
| Conread position: | 372-544 |
| Cow position: | chr4:54930526-54930356 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 42, 59 |
| Conread position: | 372-591 |
| Cow position: | chr4:19408106-19407882 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 67 |
| Conread position: | 372-653 |
| Cow position: | chr4:12591317-12591028 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 373-669 |
| Cow position: | chr4:27530012-27530319 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 380-671 |
| Cow position: | chr4:38944356-38944048 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 46 |
| Conread position: | 381-623 |
| Cow position: | chr4:25888927-25888686 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 382-553 |
| Cow position: | chr4:35940102-35939930 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 382-564 |
| Cow position: | chr4:11021750-11021564 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 382-599 |
| Cow position: | chr4:45013260-45013053 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 63, 36 |
| Conread position: | 382-599 |
| Cow position: | chr4:45775436-45775214 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 48 |
| Conread position: | 382-599 |
| Cow position: | chr4:54190992-54191213 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 108 |
| Conread position: | 382-600 |
| Cow position: | chr4:36577726-36577502 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 37 |
| Conread position: | 382-611 |
| Cow position: | chr4:23445145-23444906 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 382-653 |
| Cow position: | chr4:29291423-29291698 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 382-653 |
| Cow position: | chr4:45662605-45662324 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 89, 48 |
| Conread position: | 382-653 |
| Cow position: | chr4:49794576-49794842 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 33, 50 |
| Conread position: | 382-654 |
| Cow position: | chr4:20279240-20279497 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 382-655 |
| Cow position: | chr4:10968481-10968203 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 382-655 |
| Cow position: | chr4:37935380-37935108 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 89, 60 |
| Conread position: | 382-655 |
| Cow position: | chr4:48409366-48409091 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 382-660 |
| Cow position: | chr4:11610780-11611063 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 35, 62 |
| Conread position: | 383-607 |
| Cow position: | chr4:36290533-36290758 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 383-615 |
| Cow position: | chr4:2602137-2602373 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 34, 136 |
| Conread position: | 384-566 |
| Cow position: | chr4:44973543-44973722 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 35 |
| Conread position: | 385-648 |
| Cow position: | chr4:19102978-19102689 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 386-569 |
| Cow position: | chr4:30974248-30974425 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 57, 33 |
| Conread position: | 386-591 |
| Cow position: | chr4:69543091-69543298 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 386-653 |
| Cow position: | chr4:19313919-19314179 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 85, 177 |
| Conread position: | 386-653 |
| Cow position: | chr4:52748550-52748270 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 28, 69 |
| Conread position: | 386-659 |
| Cow position: | chr4:26400870-26401143 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 388-615 |
| Cow position: | chr4:64657386-64657165 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 388-661 |
| Cow position: | chr4:19578307-19578583 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 139, 27 |
| Conread position: | 415-655 |
| Cow position: | chr4:28574213-28573972 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 415-667 |
| Cow position: | chr4:19430304-19430565 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 424-567 |
| Cow position: | chr4:59008406-59008265 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 136, 6 |
| Conread position: | 434-605 |
| Cow position: | chr4:19256650-19256823 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 434-653 |
| Cow position: | chr4:42232068-42231841 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 38, 73 |
| Conread position: | 435-611 |
| Cow position: | chr4:19708889-19709075 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 437-607 |
| Cow position: | chr4:3268405-3268234 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 438-603 |
| Cow position: | chr4:27698992-27699159 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 442-600 |
| Cow position: | chr4:68391517-68391366 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 117, 36 |
| Conread position: | 442-655 |
| Cow position: | chr4:28701322-28701539 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 36, 69 |
| Conread position: | 443-590 |
| Cow position: | chr4:65175181-65175030 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 443-659 |
| Cow position: | chr4:31177790-31178020 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 126, 23 |
| Conread position: | 444-598 |
| Cow position: | chr4:59871444-59871594 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 445-600 |
| Cow position: | chr4:45910011-45909855 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 143 |
| Conread position: | 445-653 |
| Cow position: | chr4:3388510-3388734 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 108 |
| Conread position: | 446-653 |
| Cow position: | chr4:15236603-15236815 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 26, 57 |
| Conread position: | 447-658 |
| Cow position: | chr4:47305045-47305278 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 470-653 |
| Cow position: | chr4:60955323-60955513 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 99, 19 |
| Conread position: | 471-653 |
| Cow position: | chr4:16070680-16070493 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 18 |
| Conread position: | 482-672 |
| Cow position: | chr4:29842830-29843035 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 106 |
| Conread position: | 493-616 |
| Cow position: | chr4:23271297-23271423 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 503-673 |
| Cow position: | chr4:21128160-21128332 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 104, 60 |
Show alignments to all cow chromosomes.