Cow genome map
| Conread name: | Pig3-SRG8001B15 |
| Conread position: | 371-673 |
| Cow position: | chr5:35763201-35763490 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 100, 59 |
| Conread position: | 372-543 |
| Cow position: | chr5:16509023-16509204 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 372-613 |
| Cow position: | chr5:26477085-26476847 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 99, 40 |
| Conread position: | 374-600 |
| Cow position: | chr5:64523938-64523706 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 40, 61 |
| Conread position: | 376-661 |
| Cow position: | chr5:7057469-7057162 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 382-522 |
| Cow position: | chr5:21920312-21920457 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 382-544 |
| Cow position: | chr5:61840129-61840287 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 59, 37 |
| Conread position: | 382-572 |
| Cow position: | chr5:5257356-5257160 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 33, 71 |
| Conread position: | 382-595 |
| Cow position: | chr5:47323402-47323615 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 382-598 |
| Cow position: | chr5:23678765-23678549 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 382-603 |
| Cow position: | chr5:29827986-29828205 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 382-603 |
| Cow position: | chr5:30949979-30949756 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 89, 207 |
| Conread position: | 382-611 |
| Cow position: | chr5:35247173-35246941 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 382-613 |
| Cow position: | chr5:13717630-13717400 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 382-613 |
| Cow position: | chr5:54767972-54767738 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 382-616 |
| Cow position: | chr5:37808732-37808488 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 382-618 |
| Cow position: | chr5:35969478-35969706 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 382-652 |
| Cow position: | chr5:23529343-23529076 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 25, 55 |
| Conread position: | 382-653 |
| Cow position: | chr5:19752242-19752528 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 382-653 |
| Cow position: | chr5:27411460-27411198 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 382-653 |
| Cow position: | chr5:43858496-43858191 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 29, 149 |
| Conread position: | 382-653 |
| Cow position: | chr5:46512826-46512541 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 96, 29 |
| Conread position: | 382-661 |
| Cow position: | chr5:12901854-12902154 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 35, 96 |
| Conread position: | 382-661 |
| Cow position: | chr5:47871106-47870821 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 382-661 |
| Cow position: | chr5:57074396-57074103 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 25, 57 |
| Conread position: | 383-625 |
| Cow position: | chr5:54350425-54350177 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 383-653 |
| Cow position: | chr5:66972366-66972657 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 47 |
| Conread position: | 384-599 |
| Cow position: | chr5:65752796-65753018 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 53, 197 |
| Conread position: | 386-611 |
| Cow position: | chr5:39937047-39937284 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 21, 111 |
| Conread position: | 386-653 |
| Cow position: | chr5:41165027-41165309 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 387-580 |
| Cow position: | chr5:72564704-72564902 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 388-628 |
| Cow position: | chr5:39447593-39447351 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 392-653 |
| Cow position: | chr5:34624904-34625175 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 53, 182 |
| Conread position: | 399-655 |
| Cow position: | chr5:16938067-16937805 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 413-657 |
| Cow position: | chr5:56613599-56613332 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 415-600 |
| Cow position: | chr5:3589003-3589185 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 145, 32 |
| Conread position: | 415-649 |
| Cow position: | chr5:6528653-6528887 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 415-673 |
| Cow position: | chr5:40237190-40237431 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 145, 15 |
| Conread position: | 427-606 |
| Cow position: | chr5:44054073-44053891 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 15, 103 |
| Conread position: | 435-599 |
| Cow position: | chr5:9369282-9369114 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 435-654 |
| Cow position: | chr5:26549150-26548915 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 436-653 |
| Cow position: | chr5:6520001-6520233 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 438-655 |
| Cow position: | chr5:7713763-7713977 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 122, 36 |
| Conread position: | 439-658 |
| Cow position: | chr5:43846382-43846146 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 7, 36 |
| Conread position: | 441-613 |
| Cow position: | chr5:51490250-51490078 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 443-595 |
| Cow position: | chr5:50871809-50871970 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 445-653 |
| Cow position: | chr5:46681724-46681496 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 446-611 |
| Cow position: | chr5:61049332-61049501 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 450-599 |
| Cow position: | chr5:3743326-3743477 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 452-580 |
| Cow position: | chr5:7723670-7723803 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 452-611 |
| Cow position: | chr5:53055555-53055392 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 458-653 |
| Cow position: | chr5:21531092-21530902 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 111, 0 |
Show alignments to all cow chromosomes.