Cow genome map
| Conread name: | Pig3-SRG8001B15 |
| Conread position: | 372-603 |
| Cow position: | chr9:33114474-33114240 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 372-651 |
| Cow position: | chr9:4262965-4263258 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 47, 113 |
| Conread position: | 372-653 |
| Cow position: | chr9:11168857-11168574 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 373-621 |
| Cow position: | chr9:52513326-52513573 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 94, 60 |
| Conread position: | 374-549 |
| Cow position: | chr9:60081031-60080853 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 56 |
| Conread position: | 382-558 |
| Cow position: | chr9:17928877-17928699 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 382-583 |
| Cow position: | chr9:19714192-19713994 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 89, 48 |
| Conread position: | 382-590 |
| Cow position: | chr9:52839769-52839972 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 382-595 |
| Cow position: | chr9:55075016-55075225 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 382-603 |
| Cow position: | chr9:9461538-9461760 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 59 |
| Conread position: | 382-607 |
| Cow position: | chr9:6596117-6596340 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 382-611 |
| Cow position: | chr9:6840119-6839880 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 32, 211 |
| Conread position: | 382-611 |
| Cow position: | chr9:30402303-30402540 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 25, 55 |
| Conread position: | 382-612 |
| Cow position: | chr9:50080929-50081155 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 90, 37 |
| Conread position: | 382-613 |
| Cow position: | chr9:1973059-1972834 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 382-613 |
| Cow position: | chr9:33940723-33940490 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 5, 50 |
| Conread position: | 382-644 |
| Cow position: | chr9:4630222-4629947 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 382-652 |
| Cow position: | chr9:1867567-1867301 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 62, 31 |
| Conread position: | 382-653 |
| Cow position: | chr9:5433755-5433474 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 382-653 |
| Cow position: | chr9:19555491-19555218 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 382-655 |
| Cow position: | chr9:40005593-40005304 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 37, 49 |
| Conread position: | 382-661 |
| Cow position: | chr9:25546756-25546478 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 91, 37 |
| Conread position: | 382-661 |
| Cow position: | chr9:34410278-34410572 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 91, 68 |
| Conread position: | 382-673 |
| Cow position: | chr9:43871096-43870801 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 36, 221 |
| Conread position: | 383-603 |
| Cow position: | chr9:33218833-33219054 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 383-618 |
| Cow position: | chr9:20416392-20416624 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 383-655 |
| Cow position: | chr9:32676796-32676504 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 385-599 |
| Cow position: | chr9:46664936-46664723 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 87, 30 |
| Conread position: | 386-558 |
| Cow position: | chr9:44914975-44915155 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 54 |
| Conread position: | 386-603 |
| Cow position: | chr9:36445742-36445510 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 28, 215 |
| Conread position: | 386-671 |
| Cow position: | chr9:1877894-1878187 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 30, 45 |
| Conread position: | 388-653 |
| Cow position: | chr9:20579488-20579759 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 388-657 |
| Cow position: | chr9:37017001-37016726 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 42 |
| Conread position: | 415-569 |
| Cow position: | chr9:1350132-1349978 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 415-611 |
| Cow position: | chr9:34278977-34279170 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 426-607 |
| Cow position: | chr9:4646250-4646437 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 426-659 |
| Cow position: | chr9:29819794-29819549 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 430-673 |
| Cow position: | chr9:47517269-47517006 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 433-597 |
| Cow position: | chr9:60110318-60110150 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 433-608 |
| Cow position: | chr9:22289831-22289655 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 435-600 |
| Cow position: | chr9:20755694-20755859 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 36, 87 |
| Conread position: | 437-625 |
| Cow position: | chr9:39315910-39315727 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 437-654 |
| Cow position: | chr9:48017044-48016817 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 5 |
| Conread position: | 438-672 |
| Cow position: | chr9:56827544-56827282 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 440-608 |
| Cow position: | chr9:43623329-43623157 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 440-623 |
| Cow position: | chr9:34888237-34888420 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 441-655 |
| Cow position: | chr9:28156754-28156527 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 443-607 |
| Cow position: | chr9:56032257-56032424 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 444-651 |
| Cow position: | chr9:44758875-44759096 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 117, 75 |
| Conread position: | 444-661 |
| Cow position: | chr9:52763703-52763932 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 446-655 |
| Cow position: | chr9:14738304-14738079 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 450-652 |
| Cow position: | chr9:25628135-25627926 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 450-655 |
| Cow position: | chr9:44624324-44624539 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 21, 125 |
| Conread position: | 453-607 |
| Cow position: | chr9:3353403-3353252 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 454-618 |
| Cow position: | chr9:32858585-32858754 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 18, 62 |
| Conread position: | 467-654 |
| Cow position: | chr9:61847100-61847287 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 93, 10 |
| Conread position: | 472-611 |
| Cow position: | chr9:37955143-37955285 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 474-661 |
| Cow position: | chr9:40603694-40603489 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 195 |
Show alignments to all cow chromosomes.