Cow genome map
| Conread name: | Pig3-SRG8014D21 |
| Conread position: | 184-448 |
| Cow position: | chr12:12030801-12031075 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 233-607 |
| Cow position: | chr12:31228552-31228188 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 236-523 |
| Cow position: | chr12:30745698-30745400 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 237-484 |
| Cow position: | chr12:30661974-30662226 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 5, 28 |
| Conread position: | 237-602 |
| Cow position: | chr12:10895577-10895942 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 45 |
| Conread position: | 240-475 |
| Cow position: | chr12:17702252-17702500 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 240-583 |
| Cow position: | chr12:8868903-8869273 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 267 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 73, 45 |
| Conread position: | 240-583 |
| Cow position: | chr12:25561342-25560998 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 241-443 |
| Cow position: | chr12:4162392-4162606 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 241-504 |
| Cow position: | chr12:41091504-41091233 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 102, 77 |
| Conread position: | 241-509 |
| Cow position: | chr12:36954410-36954676 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 70, 48 |
| Conread position: | 241-515 |
| Cow position: | chr12:25456090-25455807 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 70, 44 |
| Conread position: | 241-601 |
| Cow position: | chr12:40910318-40910683 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 241-638 |
| Cow position: | chr12:6210187-6210594 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 41 |
| Conread position: | 241-638 |
| Cow position: | chr12:7978011-7977624 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 76 |
| Conread position: | 241-638 |
| Cow position: | chr12:18937377-18936970 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 290 |
| Conread position: | 241-638 |
| Cow position: | chr12:42966971-42966572 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 41 |
| Conread position: | 242-511 |
| Cow position: | chr12:25619401-25619680 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 242-583 |
| Cow position: | chr12:21393676-21393325 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 243-427 |
| Cow position: | chr12:6121332-6121135 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 243-469 |
| Cow position: | chr12:4182722-4182957 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 27 |
| Conread position: | 247-607 |
| Cow position: | chr12:16543608-16543975 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 252-385 |
| Cow position: | chr12:23916806-23916665 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 252-441 |
| Cow position: | chr12:38511876-38512075 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 252-470 |
| Cow position: | chr12:23574723-23574507 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 252-482 |
| Cow position: | chr12:39465539-39465305 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 252-493 |
| Cow position: | chr12:41214361-41214603 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 252-514 |
| Cow position: | chr12:6410775-6411034 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 252-515 |
| Cow position: | chr12:24032965-24032699 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 252-516 |
| Cow position: | chr12:27562867-27563145 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 61, 31 |
| Conread position: | 252-523 |
| Cow position: | chr12:35771061-35771346 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 252-530 |
| Cow position: | chr12:44622315-44622037 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 59, 32 |
| Conread position: | 252-607 |
| Cow position: | chr12:5631919-5632273 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 86 |
| Conread position: | 252-614 |
| Cow position: | chr12:36012653-36013027 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 252-621 |
| Cow position: | chr12:6469100-6469455 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 63 |
| Conread position: | 252-621 |
| Cow position: | chr12:18420962-18421338 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 252-621 |
| Cow position: | chr12:27563417-27563789 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 252-623 |
| Cow position: | chr12:6241279-6240893 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 124 |
| Conread position: | 253-549 |
| Cow position: | chr12:16851047-16851347 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 60, 252 |
| Conread position: | 253-583 |
| Cow position: | chr12:12304346-12304031 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 60, 44 |
| Conread position: | 254-506 |
| Cow position: | chr12:26317423-26317161 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 37 |
| Conread position: | 254-516 |
| Cow position: | chr12:45820408-45820665 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 84, 33 |
| Conread position: | 255-513 |
| Cow position: | chr12:17495250-17495497 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 99, 27 |
| Conread position: | 258-492 |
| Cow position: | chr12:18388329-18388566 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 10, 61 |
| Conread position: | 267-613 |
| Cow position: | chr12:35310736-35311078 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 15 |
| Conread position: | 267-639 |
| Cow position: | chr12:5800982-5800602 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 159 |
| Conread position: | 270-501 |
| Cow position: | chr12:8921844-8922082 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 275-544 |
| Cow position: | chr12:22260883-22261148 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 285-521 |
| Cow position: | chr12:30805784-30805541 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 26, 88 |
| Conread position: | 285-611 |
| Cow position: | chr12:27803123-27803447 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 285-636 |
| Cow position: | chr12:17717004-17716652 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 285-638 |
| Cow position: | chr12:4594020-4593666 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 252 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 112, 29 |
| Conread position: | 286-502 |
| Cow position: | chr12:24107616-24107842 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 286-507 |
| Cow position: | chr12:3510492-3510266 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 286-612 |
| Cow position: | chr12:20326703-20326371 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 87 |
| Conread position: | 294-460 |
| Cow position: | chr12:28213436-28213266 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 294-536 |
| Cow position: | chr12:9229565-9229810 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 296-567 |
| Cow position: | chr12:41979379-41979656 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 17, 163 |
| Conread position: | 296-638 |
| Cow position: | chr12:19039690-19040046 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 130 |
| Conread position: | 298-496 |
| Cow position: | chr12:4134588-4134377 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 193 |
| Conread position: | 300-521 |
| Cow position: | chr12:30728320-30728551 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 188 |
| Conread position: | 302-537 |
| Cow position: | chr12:31925558-31925327 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 16 |
| Conread position: | 315-513 |
| Cow position: | chr12:46635047-46635250 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 318-598 |
| Cow position: | chr12:28011005-28011289 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 188 |
| Conread position: | 323-613 |
| Cow position: | chr12:19420040-19420336 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 23, 132 |
| Conread position: | 331-515 |
| Cow position: | chr12:14131862-14132052 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 334-502 |
| Cow position: | chr12:17486261-17486431 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 342-640 |
| Cow position: | chr12:27928603-27928905 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 171 |
| Conread position: | 343-495 |
| Cow position: | chr12:3093126-3093281 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 350-512 |
| Cow position: | chr12:4866672-4866512 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 355-639 |
| Cow position: | chr12:40428469-40428749 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 230, 152 |
| Conread position: | 358-598 |
| Cow position: | chr12:35305005-35304756 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 146, 88 |
| Conread position: | 361-530 |
| Cow position: | chr12:7055441-7055605 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 364-623 |
| Cow position: | chr12:9400592-9400322 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 188 |
| Conread position: | 364-643 |
| Cow position: | chr12:3600052-3600327 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 140 |
| Conread position: | 503-638 |
| Cow position: | chr12:26038635-26038774 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 116 |
| Conread position: | 515-638 |
| Cow position: | chr12:8523730-8523605 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.