Cow genome map

Conread name: Pig3-SRG8014D21

Conread position: 199-621
Cow position: chr18:26937747-26937321 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 20

Conread position: 209-638
Cow position: chr18:22120879-22121303 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 31

Conread position: 212-638
Cow position: chr18:16044148-16044572 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 286
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 79, 21

Conread position: 223-570
Cow position: chr18:4078787-4078454 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 236
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 89, 15

Conread position: 233-512
Cow position: chr18:22214473-22214188 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 218
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 9, 50

Conread position: 233-571
Cow position: chr18:56159447-56159104 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 63

Conread position: 233-583
Cow position: chr18:45104456-45104814 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 10

Conread position: 233-617
Cow position: chr18:2608740-2609137 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 116

Conread position: 235-515
Cow position: chr18:4516012-4515726 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 186
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 37

Conread position: 237-598
Cow position: chr18:29371847-29371483 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 45

Conread position: 237-656
Cow position: chr18:39001822-39002236 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 53

Conread position: 240-445
Cow position: chr18:219317-219101 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 44, 0

Conread position: 240-488
Cow position: chr18:2592187-2592447 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 26, 48

Conread position: 241-431
Cow position: chr18:18369383-18369578 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 70, 125

Conread position: 241-450
Cow position: chr18:14085440-14085224 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 39, 59

Conread position: 241-485
Cow position: chr18:48453664-48453422 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 105, 41

Conread position: 241-488
Cow position: chr18:3044425-3044156 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 245

Conread position: 241-502
Cow position: chr18:25282577-25282843 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 72, 47

Conread position: 241-510
Cow position: chr18:42455045-42455316 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 57, 91

Conread position: 241-515
Cow position: chr18:20127129-20127403 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 191
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 21, 44

Conread position: 241-529
Cow position: chr18:26998859-26998548 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 72, 29

Conread position: 241-606
Cow position: chr18:55692792-55692430 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 108

Conread position: 241-607
Cow position: chr18:39662755-39662384 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 43

Conread position: 241-621
Cow position: chr18:10656414-10656041 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 72

Conread position: 241-635
Cow position: chr18:33606607-33606211 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 41

Conread position: 241-638
Cow position: chr18:2270528-2270926 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 5

Conread position: 241-638
Cow position: chr18:7956122-7955724 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 48

Conread position: 241-638
Cow position: chr18:7965208-7964808 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 44

Conread position: 241-638
Cow position: chr18:43283780-43284174 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 33

Conread position: 241-638
Cow position: chr18:47314304-47314721 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 394

Conread position: 241-638
Cow position: chr18:55552943-55552542 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 41

Conread position: 243-501
Cow position: chr18:35537256-35537516 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 70, 169

Conread position: 245-496
Cow position: chr18:24945833-24946093 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 184
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 67, 52

Conread position: 247-638
Cow position: chr18:4316282-4315876 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 36

Conread position: 247-638
Cow position: chr18:11618445-11618059 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 39

Conread position: 249-515
Cow position: chr18:20271051-20271321 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 62, 39

Conread position: 250-638
Cow position: chr18:6881385-6881752 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 279
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 10, 35

Conread position: 252-448
Cow position: chr18:48828809-48829021 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 252-475
Cow position: chr18:35582132-35582363 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 166
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 58, 114

Conread position: 252-512
Cow position: chr18:55499037-55498769 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 28, 15

Conread position: 252-582
Cow position: chr18:10576070-10575746 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 37

Conread position: 252-607
Cow position: chr18:55505372-55505011 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 256
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 59, 19

Conread position: 252-621
Cow position: chr18:14815377-14815741 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 29

Conread position: 252-621
Cow position: chr18:21195376-21195745 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 87

Conread position: 252-638
Cow position: chr18:29356659-29357060 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 37

Conread position: 252-638
Cow position: chr18:51212149-51211743 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 31

Conread position: 253-506
Cow position: chr18:267851-268103 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 60, 31

Conread position: 253-516
Cow position: chr18:11166945-11166677 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 29

Conread position: 253-635
Cow position: chr18:16842095-16842492 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 272
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 53, 234

Conread position: 254-491
Cow position: chr18:30794392-30794157 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 33, 53

Conread position: 254-635
Cow position: chr18:33793666-33793284 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 13

Conread position: 254-638
Cow position: chr18:11322559-11322166 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 28

Conread position: 254-638
Cow position: chr18:29648747-29648366 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 64

Conread position: 257-583
Cow position: chr18:41271052-41270720 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 79

Conread position: 270-637
Cow position: chr18:55589539-55589896 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 84

Conread position: 271-501
Cow position: chr18:36098153-36097914 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 185
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 42, 106

Conread position: 272-637
Cow position: chr18:52635130-52635503 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 158

Conread position: 276-618
Cow position: chr18:7359689-7359339 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 245

Conread position: 276-638
Cow position: chr18:7487196-7486829 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 42

Conread position: 285-512
Cow position: chr18:13360000-13359764 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 176

Conread position: 289-623
Cow position: chr18:43564161-43563820 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 245
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 24, 135

Conread position: 296-571
Cow position: chr18:35797549-35797266 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 193
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 10, 132

Conread position: 298-613
Cow position: chr18:23447158-23447477 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 221

Conread position: 300-526
Cow position: chr18:43823029-43823263 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 214

Conread position: 302-537
Cow position: chr18:6275738-6275495 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 184
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 10, 212

Conread position: 309-503
Cow position: chr18:56163492-56163298 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 50, 44

Conread position: 314-638
Cow position: chr18:30186005-30186341 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 28, 112

Conread position: 318-638
Cow position: chr18:21721377-21721703 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 166

Conread position: 319-496
Cow position: chr18:18976988-18976802 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 319-635
Cow position: chr18:16134412-16134729 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 16

Conread position: 322-485
Cow position: chr18:4489979-4490145 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 28

Conread position: 324-565
Cow position: chr18:39279104-39279354 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 37, 19

Conread position: 325-635
Cow position: chr18:20195608-20195923 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 210
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 9, 96

Conread position: 325-635
Cow position: chr18:31002892-31003195 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 32

Conread position: 325-638
Cow position: chr18:33272834-33272523 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 80

Conread position: 327-634
Cow position: chr18:40893180-40892853 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 237
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 22, 31

Conread position: 342-532
Cow position: chr18:1733321-1733507 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 11, 75

Conread position: 342-612
Cow position: chr18:35535411-35535683 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 75, 138

Conread position: 342-638
Cow position: chr18:31082457-31082762 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 162, 11

Conread position: 342-639
Cow position: chr18:23949533-23949834 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 11, 166

Conread position: 350-605
Cow position: chr18:29264590-29264839 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 77, 129

Show alignments to all cow chromosomes.