Cow genome map

Conread name: Pig3-SRG8014D21

Conread position: 175-621
Cow position: chr19:35380485-35380930 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 104

Conread position: 207-635
Cow position: chr19:47110075-47109632 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 298
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 27, 62

Conread position: 233-480
Cow position: chr19:22799070-22799327 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 9, 255

Conread position: 233-491
Cow position: chr19:3621437-3621172 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 18, 10

Conread position: 233-638
Cow position: chr19:4448550-4448139 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 246

Conread position: 234-622
Cow position: chr19:22765629-22765232 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 9

Conread position: 236-455
Cow position: chr19:24137270-24137038 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 20

Conread position: 237-488
Cow position: chr19:55590236-55589979 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 5, 79

Conread position: 237-611
Cow position: chr19:2589512-2589138 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 49

Conread position: 237-635
Cow position: chr19:31827102-31826703 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 280
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 106, 48

Conread position: 238-503
Cow position: chr19:419892-419609 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 53

Conread position: 238-621
Cow position: chr19:16567156-16566774 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 47

Conread position: 238-638
Cow position: chr19:24062279-24061896 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 5

Conread position: 240-516
Cow position: chr19:7473694-7473420 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 14, 7

Conread position: 240-565
Cow position: chr19:36461529-36461856 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 226
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 50, 27

Conread position: 240-569
Cow position: chr19:28921826-28921500 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 222
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 70, 230

Conread position: 240-582
Cow position: chr19:56063430-56063773 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 234
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 46

Conread position: 241-399
Cow position: chr19:21816965-21816798 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 241-444
Cow position: chr19:4329051-4329256 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 71, 34

Conread position: 241-445
Cow position: chr19:11424317-11424519 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 72, 39

Conread position: 241-448
Cow position: chr19:33290482-33290269 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 71, 43

Conread position: 241-500
Cow position: chr19:33469019-33468759 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 48

Conread position: 241-516
Cow position: chr19:10081073-10080788 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 39, 0

Conread position: 241-521
Cow position: chr19:10232411-10232688 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 71, 51

Conread position: 241-575
Cow position: chr19:10172005-10171653 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 332

Conread position: 241-578
Cow position: chr19:3222803-3222462 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 48

Conread position: 241-595
Cow position: chr19:44757620-44757976 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 250
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 72, 44

Conread position: 241-637
Cow position: chr19:36125583-36125187 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 43

Conread position: 241-638
Cow position: chr19:729744-730132 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 41

Conread position: 241-638
Cow position: chr19:38842561-38842946 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 42

Conread position: 241-638
Cow position: chr19:39698062-39697671 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 80

Conread position: 241-638
Cow position: chr19:43431329-43431720 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 40

Conread position: 243-484
Cow position: chr19:34911886-34911638 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 69, 129

Conread position: 243-556
Cow position: chr19:27180265-27180575 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 67, 42

Conread position: 243-638
Cow position: chr19:33307097-33306698 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 41

Conread position: 243-642
Cow position: chr19:39661545-39661948 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 28

Conread position: 244-565
Cow position: chr19:37502682-37502984 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 231
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 7, 41

Conread position: 247-602
Cow position: chr19:14593049-14592689 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 43

Conread position: 247-634
Cow position: chr19:42240291-42240687 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 118

Conread position: 249-635
Cow position: chr19:38392795-38392400 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 111

Conread position: 250-506
Cow position: chr19:1664200-1664465 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 16, 121

Conread position: 250-621
Cow position: chr19:34955708-34956082 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 40

Conread position: 251-505
Cow position: chr19:5433563-5433831 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 62, 32

Conread position: 251-638
Cow position: chr19:37646847-37647242 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 16

Conread position: 252-498
Cow position: chr19:6049686-6049924 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 93, 32

Conread position: 252-502
Cow position: chr19:1968318-1968571 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 59, 37

Conread position: 252-507
Cow position: chr19:33823306-33823045 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 59, 19

Conread position: 252-508
Cow position: chr19:15887333-15887595 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 45, 113

Conread position: 252-513
Cow position: chr19:21335618-21335889 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 55, 37

Conread position: 252-515
Cow position: chr19:11376415-11376685 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 59, 45

Conread position: 252-516
Cow position: chr19:1153203-1152943 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 65, 86

Conread position: 252-516
Cow position: chr19:40450006-40449751 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 59, 114

Conread position: 252-583
Cow position: chr19:31595288-31594953 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 32

Conread position: 252-621
Cow position: chr19:20661421-20661802 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 211

Conread position: 252-621
Cow position: chr19:47727586-47727953 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 89

Conread position: 252-635
Cow position: chr19:43441156-43440776 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 114

Conread position: 252-638
Cow position: chr19:7637248-7637623 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 277
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 36, 43

Conread position: 252-638
Cow position: chr19:32451072-32450662 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 283
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 53, 121

Conread position: 256-638
Cow position: chr19:46918833-46918440 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 26

Conread position: 260-501
Cow position: chr19:35782150-35782398 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 46, 25

Conread position: 267-638
Cow position: chr19:54294613-54294985 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 141

Conread position: 278-475
Cow position: chr19:6531854-6531651 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 35, 94

Conread position: 279-537
Cow position: chr19:53645458-53645714 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 178
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 74, 199

Conread position: 279-623
Cow position: chr19:46180853-46181196 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 85

Conread position: 290-635
Cow position: chr19:31395944-31396289 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 30

Conread position: 294-635
Cow position: chr19:27104685-27104357 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 10

Conread position: 295-502
Cow position: chr19:10186448-10186233 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 77

Conread position: 295-551
Cow position: chr19:48722977-48722712 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 15, 203

Conread position: 295-600
Cow position: chr19:34425532-34425220 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 115

Conread position: 296-484
Cow position: chr19:31762975-31762776 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 193

Conread position: 296-618
Cow position: chr19:4600013-4599699 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 33, 23

Conread position: 296-635
Cow position: chr19:21379984-21380317 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 22

Conread position: 300-523
Cow position: chr19:53037210-53037439 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 13, 111

Conread position: 309-541
Cow position: chr19:48475074-48474840 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 39, 52

Conread position: 318-502
Cow position: chr19:25572368-25572179 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 318-505
Cow position: chr19:41584896-41584704 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 22, 52

Conread position: 319-515
Cow position: chr19:7492355-7492159 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 27, 51

Conread position: 319-606
Cow position: chr19:46159974-46159700 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 196
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 27, 49

Conread position: 319-621
Cow position: chr19:16594817-16594512 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 147, 27

Conread position: 319-638
Cow position: chr19:39751399-39751075 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 16

Conread position: 320-635
Cow position: chr19:19242015-19241679 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 225
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 16

Conread position: 320-635
Cow position: chr19:30746318-30746003 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 81, 15

Conread position: 323-624
Cow position: chr19:18788187-18788489 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 24, 182

Conread position: 326-543
Cow position: chr19:33622216-33622006 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 101, 95

Conread position: 332-638
Cow position: chr19:11817029-11817331 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 8

Conread position: 333-639
Cow position: chr19:3834206-3833903 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 19

Conread position: 342-497
Cow position: chr19:56000964-56001123 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 11

Conread position: 342-638
Cow position: chr19:24935920-24936198 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 10, 73

Conread position: 342-639
Cow position: chr19:11585972-11586273 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 23, 146

Conread position: 345-573
Cow position: chr19:8771140-8770913 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 8, 160

Conread position: 346-607
Cow position: chr19:21115198-21114935 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 160

Conread position: 346-638
Cow position: chr19:3858190-3858483 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 68, 135

Conread position: 347-559
Cow position: chr19:31287660-31287866 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 128, 0

Conread position: 347-582
Cow position: chr19:25726990-25727223 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 5, 11

Conread position: 350-636
Cow position: chr19:14573261-14572971 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 160

Conread position: 353-636
Cow position: chr19:15711923-15711646 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 7, 81

Conread position: 361-574
Cow position: chr19:19490075-19490273 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 40, 0

Conread position: 361-621
Cow position: chr19:6891908-6892162 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 219, 58

Conread position: 363-608
Cow position: chr19:5934563-5934803 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 221, 61

Show alignments to all cow chromosomes.