Cow genome map

Conread name: Pig3-SRG8014D21

Conread position: 212-492
Cow position: chr20:15565744-15566034 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 22, 78

Conread position: 212-623
Cow position: chr20:40423020-40423423 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 75

Conread position: 223-475
Cow position: chr20:37165786-37165540 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 11, 63

Conread position: 233-528
Cow position: chr20:15548835-15549135 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 10

Conread position: 233-531
Cow position: chr20:8556208-8556512 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 227
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 18, 12

Conread position: 233-636
Cow position: chr20:17846022-17845608 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 114

Conread position: 234-621
Cow position: chr20:28982762-28982371 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 276
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 17, 9

Conread position: 235-513
Cow position: chr20:32577859-32578144 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 53, 210

Conread position: 238-422
Cow position: chr20:41089737-41089922 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 74, 59

Conread position: 238-473
Cow position: chr20:3141629-3141399 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 75, 38

Conread position: 240-515
Cow position: chr20:24868978-24869254 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 188
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 27

Conread position: 240-581
Cow position: chr20:6240467-6240819 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 36

Conread position: 240-636
Cow position: chr20:3599342-3599736 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 49

Conread position: 240-638
Cow position: chr20:10469119-10468727 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 55

Conread position: 241-452
Cow position: chr20:271371-271586 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 96, 48

Conread position: 241-458
Cow position: chr20:28832023-28831794 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 72, 41

Conread position: 241-473
Cow position: chr20:11864081-11864320 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 24

Conread position: 241-499
Cow position: chr20:34251621-34251888 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 40, 186

Conread position: 241-515
Cow position: chr20:22704347-22704062 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 70, 125

Conread position: 241-530
Cow position: chr20:10200398-10200102 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 72, 104

Conread position: 241-554
Cow position: chr20:13967204-13967522 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 174

Conread position: 241-583
Cow position: chr20:24002368-24002037 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 97

Conread position: 241-610
Cow position: chr20:31069691-31069321 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 263
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 64, 80

Conread position: 241-612
Cow position: chr20:19237129-19236768 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 29

Conread position: 241-638
Cow position: chr20:4755782-4756170 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 42

Conread position: 241-638
Cow position: chr20:9014294-9014696 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 41

Conread position: 241-638
Cow position: chr20:19313013-19313413 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 30

Conread position: 241-638
Cow position: chr20:22959295-22959691 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 16

Conread position: 243-442
Cow position: chr20:13025564-13025761 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 103, 41

Conread position: 243-485
Cow position: chr20:34097906-34098154 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 70, 39

Conread position: 243-581
Cow position: chr20:39728500-39728161 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 38

Conread position: 243-607
Cow position: chr20:17251768-17251393 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 42

Conread position: 243-635
Cow position: chr20:20203270-20202871 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 41

Conread position: 243-638
Cow position: chr20:10178048-10178443 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 288
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 81, 38

Conread position: 247-498
Cow position: chr20:11542234-11542493 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 64, 119

Conread position: 252-473
Cow position: chr20:14980468-14980698 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 56, 115

Conread position: 252-495
Cow position: chr20:15593339-15593090 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 59, 112

Conread position: 252-495
Cow position: chr20:28067378-28067631 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 26, 125

Conread position: 252-498
Cow position: chr20:6603084-6602828 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 59, 113

Conread position: 252-509
Cow position: chr20:38578719-38578976 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 91, 47

Conread position: 252-515
Cow position: chr20:18618677-18618413 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 59, 15

Conread position: 252-597
Cow position: chr20:35797653-35797299 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 128

Conread position: 252-613
Cow position: chr20:22313119-22313484 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 29

Conread position: 252-620
Cow position: chr20:9433628-9433275 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 33

Conread position: 252-636
Cow position: chr20:23870777-23871160 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 29

Conread position: 252-636
Cow position: chr20:24392020-24391655 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 284
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 61, 30

Conread position: 252-636
Cow position: chr20:34001348-34001735 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 263

Conread position: 252-637
Cow position: chr20:13652326-13652710 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 257
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 61, 30

Conread position: 252-638
Cow position: chr20:3781382-3781780 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 114

Conread position: 252-638
Cow position: chr20:27340104-27339715 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 31

Conread position: 253-481
Cow position: chr20:9988620-9988391 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 98, 29

Conread position: 253-626
Cow position: chr20:580880-581263 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 106

Conread position: 254-638
Cow position: chr20:14806926-14806537 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 31

Conread position: 257-505
Cow position: chr20:13023454-13023694 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 59, 0

Conread position: 260-514
Cow position: chr20:11923206-11923464 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 53, 149

Conread position: 260-638
Cow position: chr20:19410329-19410713 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 7

Conread position: 262-493
Cow position: chr20:5116282-5116508 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 98, 5

Conread position: 267-638
Cow position: chr20:32847371-32847005 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 15

Conread position: 269-574
Cow position: chr20:42469785-42469484 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 12

Conread position: 270-513
Cow position: chr20:11741275-11741527 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 40, 27

Conread position: 270-598
Cow position: chr20:5998648-5998984 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 248
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 41, 26

Conread position: 271-496
Cow position: chr20:33177216-33176975 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 9, 131

Conread position: 284-484
Cow position: chr20:13994825-13994615 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 28, 204

Conread position: 284-638
Cow position: chr20:33169860-33170219 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 203

Conread position: 285-515
Cow position: chr20:14735687-14735451 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 179
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 28, 81

Conread position: 285-638
Cow position: chr20:5078211-5077849 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 153

Conread position: 286-623
Cow position: chr20:21325126-21324781 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 251
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 27, 118

Conread position: 286-636
Cow position: chr20:26077091-26076742 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 195

Conread position: 289-578
Cow position: chr20:13752241-13751959 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 57, 28

Conread position: 289-636
Cow position: chr20:7110113-7110464 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 61

Conread position: 289-636
Cow position: chr20:18185574-18185233 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 114

Conread position: 295-484
Cow position: chr20:21928907-21928710 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 177

Conread position: 296-621
Cow position: chr20:4894893-4895226 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 51, 13

Conread position: 298-485
Cow position: chr20:35760668-35760475 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 99

Conread position: 300-497
Cow position: chr20:38486551-38486756 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 12, 87

Conread position: 315-621
Cow position: chr20:3658721-3659025 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 89

Conread position: 319-634
Cow position: chr20:18530415-18530102 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 220
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 192, 30

Conread position: 319-638
Cow position: chr20:10818253-10818572 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 235
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 40, 34

Conread position: 323-634
Cow position: chr20:23163905-23164217 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 32

Conread position: 325-638
Cow position: chr20:14718777-14719088 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 33

Conread position: 327-635
Cow position: chr20:32667957-32667644 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 227
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 12, 8

Conread position: 331-623
Cow position: chr20:3891999-3891717 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 197
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 11, 25

Conread position: 341-600
Cow position: chr20:34202598-34202335 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 12, 50

Conread position: 342-529
Cow position: chr20:10372346-10372536 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 11, 78

Conread position: 342-635
Cow position: chr20:14756120-14756413 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 136

Conread position: 342-635
Cow position: chr20:23850231-23849947 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 342-638
Cow position: chr20:12840004-12839710 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 137

Conread position: 344-634
Cow position: chr20:35921921-35922214 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 8, 204

Conread position: 350-517
Cow position: chr20:12784138-12783971 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 156

Conread position: 354-636
Cow position: chr20:868619-868898 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 230, 120

Conread position: 358-574
Cow position: chr20:31148018-31147813 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 59, 0

Conread position: 359-636
Cow position: chr20:22651436-22651158 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 188
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 151

Conread position: 361-638
Cow position: chr20:7710282-7710555 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 103

Conread position: 363-638
Cow position: chr20:7756703-7756975 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 149

Show alignments to all cow chromosomes.