Cow genome map
| Conread name: | Pig3-SRG8014D21 |
| Conread position: | 231-638 |
| Cow position: | chr24:27149395-27148992 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 147 |
| Conread position: | 233-511 |
| Cow position: | chr24:27608104-27608383 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 233-638 |
| Cow position: | chr24:29595815-29596221 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 236-568 |
| Cow position: | chr24:5754827-5754497 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 236-635 |
| Cow position: | chr24:11887151-11886752 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 236-638 |
| Cow position: | chr24:32124646-32125038 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 240-638 |
| Cow position: | chr24:19465931-19466348 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 239 |
| Conread position: | 240-656 |
| Cow position: | chr24:32758770-32759218 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 70, 406 |
| Conread position: | 241-499 |
| Cow position: | chr24:27968069-27967803 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 40, 135 |
| Conread position: | 241-509 |
| Cow position: | chr24:14729388-14729122 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 170 |
| Conread position: | 241-515 |
| Cow position: | chr24:27096675-27096393 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 36, 172 |
| Conread position: | 241-543 |
| Cow position: | chr24:29782150-29781843 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 241-575 |
| Cow position: | chr24:27341035-27341378 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 41 |
| Conread position: | 241-581 |
| Cow position: | chr24:20225725-20225380 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 47 |
| Conread position: | 241-599 |
| Cow position: | chr24:28553569-28553923 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 241-602 |
| Cow position: | chr24:18405326-18405684 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 159 |
| Conread position: | 241-620 |
| Cow position: | chr24:814276-814659 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 104 |
| Conread position: | 241-622 |
| Cow position: | chr24:32204810-32205195 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 241-637 |
| Cow position: | chr24:16625501-16625912 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 44 |
| Conread position: | 241-638 |
| Cow position: | chr24:15508553-15508950 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 241-639 |
| Cow position: | chr24:27290856-27290460 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 44 |
| Conread position: | 241-643 |
| Cow position: | chr24:18485009-18485421 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 125 |
| Conread position: | 243-457 |
| Cow position: | chr24:31382884-31382673 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 109 |
| Conread position: | 243-458 |
| Cow position: | chr24:18695602-18695385 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 243-555 |
| Cow position: | chr24:17311232-17311540 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 8, 56 |
| Conread position: | 243-598 |
| Cow position: | chr24:39483463-39483100 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 243-638 |
| Cow position: | chr24:11840170-11839765 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 248-638 |
| Cow position: | chr24:29673501-29673105 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 50 |
| Conread position: | 250-638 |
| Cow position: | chr24:27844551-27844935 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 51 |
| Conread position: | 252-449 |
| Cow position: | chr24:24457276-24457474 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 94, 30 |
| Conread position: | 252-470 |
| Cow position: | chr24:2095909-2096137 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 112 |
| Conread position: | 252-471 |
| Cow position: | chr24:20943142-20942920 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 252-488 |
| Cow position: | chr24:5152210-5151969 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 252-506 |
| Cow position: | chr24:25885184-25885442 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 252-510 |
| Cow position: | chr24:35794761-35795028 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 31, 48 |
| Conread position: | 252-515 |
| Cow position: | chr24:16268153-16268396 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 101, 32 |
| Conread position: | 252-553 |
| Cow position: | chr24:6913789-6914088 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 252-565 |
| Cow position: | chr24:18970535-18970828 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 252-601 |
| Cow position: | chr24:24136887-24137239 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 252-614 |
| Cow position: | chr24:39218866-39219238 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 252-622 |
| Cow position: | chr24:30235847-30235479 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 90 |
| Conread position: | 252-636 |
| Cow position: | chr24:32369945-32370324 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 253-613 |
| Cow position: | chr24:44041032-44041397 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 254-583 |
| Cow position: | chr24:24491045-24491369 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 86, 42 |
| Conread position: | 254-606 |
| Cow position: | chr24:3165790-3165441 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 58, 113 |
| Conread position: | 256-638 |
| Cow position: | chr24:16556667-16557069 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 263-638 |
| Cow position: | chr24:39440587-39440972 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 260 |
| Conread position: | 268-638 |
| Cow position: | chr24:32693664-32693290 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 272-655 |
| Cow position: | chr24:37204921-37205303 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 267 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 41, 233 |
| Conread position: | 277-509 |
| Cow position: | chr24:39955095-39955333 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 72, 42 |
| Conread position: | 285-515 |
| Cow position: | chr24:23685126-23685354 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 285-638 |
| Cow position: | chr24:27906382-27906013 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 236 |
| Conread position: | 285-638 |
| Cow position: | chr24:28721835-28721465 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 88 |
| Conread position: | 286-621 |
| Cow position: | chr24:43432736-43432387 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 22, 115 |
| Conread position: | 286-638 |
| Cow position: | chr24:27719812-27720162 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 87 |
| Conread position: | 295-508 |
| Cow position: | chr24:35074027-35073806 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 295-601 |
| Cow position: | chr24:27543543-27543855 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 5 |
| Conread position: | 296-475 |
| Cow position: | chr24:30776732-30776921 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 109 |
| Conread position: | 296-599 |
| Cow position: | chr24:15473294-15472981 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 218 |
| Conread position: | 296-621 |
| Cow position: | chr24:6071531-6071200 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 192 |
| Conread position: | 296-636 |
| Cow position: | chr24:25677971-25677620 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 148 |
| Conread position: | 296-638 |
| Cow position: | chr24:21264575-21264921 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 187 |
| Conread position: | 298-638 |
| Cow position: | chr24:33238611-33238965 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 220 |
| Conread position: | 300-502 |
| Cow position: | chr24:6900756-6900544 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 12, 185 |
| Conread position: | 300-582 |
| Cow position: | chr24:38375214-38374929 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 318-595 |
| Cow position: | chr24:20874588-20874307 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 52 |
| Conread position: | 318-637 |
| Cow position: | chr24:18374686-18374379 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 318-638 |
| Cow position: | chr24:2993016-2993346 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 319-527 |
| Cow position: | chr24:35529827-35529618 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 319-623 |
| Cow position: | chr24:5849491-5849807 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 216 |
| Conread position: | 319-633 |
| Cow position: | chr24:30860544-30860218 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 161 |
| Conread position: | 319-638 |
| Cow position: | chr24:33621581-33621901 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 323-638 |
| Cow position: | chr24:2730666-2730994 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 23, 305 |
| Conread position: | 332-606 |
| Cow position: | chr24:6342066-6341786 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 20, 179 |
| Conread position: | 342-521 |
| Cow position: | chr24:19804571-19804390 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 342-638 |
| Cow position: | chr24:6141079-6141371 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 10, 75 |
| Conread position: | 342-639 |
| Cow position: | chr24:6413691-6413390 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 11, 171 |
| Conread position: | 345-582 |
| Cow position: | chr24:15288737-15288499 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 345-639 |
| Cow position: | chr24:5607261-5607551 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 350-592 |
| Cow position: | chr24:11874760-11874994 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 117 |
| Conread position: | 350-638 |
| Cow position: | chr24:11064725-11064455 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 234, 42 |
| Conread position: | 360-583 |
| Cow position: | chr24:27229188-27229404 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 435-639 |
| Cow position: | chr24:27593384-27593588 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 152, 80 |
| Conread position: | 474-639 |
| Cow position: | chr24:39977052-39977217 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 111, 33 |
Show alignments to all cow chromosomes.