Cow genome map
| Conread name: | Pig3-SRG8014D21 |
| Conread position: | 193-481 |
| Cow position: | chr25:13380559-13380853 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 120, 19 |
| Conread position: | 193-516 |
| Cow position: | chr25:35345085-35344766 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 199-519 |
| Cow position: | chr25:36535386-36535705 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 112, 37 |
| Conread position: | 223-529 |
| Cow position: | chr25:10330385-10330677 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 233-452 |
| Cow position: | chr25:26269921-26270142 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 53 |
| Conread position: | 233-583 |
| Cow position: | chr25:21245588-21245943 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 237-605 |
| Cow position: | chr25:40956973-40957347 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 240-450 |
| Cow position: | chr25:16714261-16714480 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 240-540 |
| Cow position: | chr25:14118103-14117815 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 71, 57 |
| Conread position: | 241-417 |
| Cow position: | chr25:16555773-16555589 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 241-425 |
| Cow position: | chr25:5920951-5920758 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 171 |
| Conread position: | 241-439 |
| Cow position: | chr25:12755480-12755686 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 241-447 |
| Cow position: | chr25:20133307-20133518 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 35 |
| Conread position: | 241-515 |
| Cow position: | chr25:20785577-20785852 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 241-577 |
| Cow position: | chr25:9957031-9957365 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 241-603 |
| Cow position: | chr25:5846802-5847154 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 72, 41 |
| Conread position: | 241-636 |
| Cow position: | chr25:25827478-25827070 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 56 |
| Conread position: | 241-637 |
| Cow position: | chr25:18564494-18564100 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 44 |
| Conread position: | 241-637 |
| Cow position: | chr25:27868811-27868418 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 277 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 241-638 |
| Cow position: | chr25:5515021-5514617 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 241-638 |
| Cow position: | chr25:6464022-6464421 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 48 |
| Conread position: | 241-638 |
| Cow position: | chr25:15319927-15319537 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 241-638 |
| Cow position: | chr25:20402702-20403112 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 48 |
| Conread position: | 241-638 |
| Cow position: | chr25:41363143-41363532 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 104, 23 |
| Conread position: | 241-639 |
| Cow position: | chr25:16921790-16922187 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 39 |
| Conread position: | 241-648 |
| Cow position: | chr25:26087526-26087113 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 41 |
| Conread position: | 242-494 |
| Cow position: | chr25:12293741-12294001 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 70, 47 |
| Conread position: | 243-422 |
| Cow position: | chr25:17342463-17342276 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 46 |
| Conread position: | 243-503 |
| Cow position: | chr25:19129862-19129594 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 56 |
| Conread position: | 243-558 |
| Cow position: | chr25:12817380-12817061 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 243-599 |
| Cow position: | chr25:10138099-10137751 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 249-603 |
| Cow position: | chr25:9056184-9055846 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 250-581 |
| Cow position: | chr25:36036780-36037125 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 48 |
| Conread position: | 251-507 |
| Cow position: | chr25:12117001-12117249 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 252-485 |
| Cow position: | chr25:15377323-15377092 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 61, 110 |
| Conread position: | 252-533 |
| Cow position: | chr25:21894888-21895174 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 252-546 |
| Cow position: | chr25:6474091-6474400 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 114 |
| Conread position: | 252-628 |
| Cow position: | chr25:36762101-36761733 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 252-638 |
| Cow position: | chr25:7216828-7216429 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 47 |
| Conread position: | 252-642 |
| Cow position: | chr25:14833668-14834066 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 286 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 91, 32 |
| Conread position: | 253-505 |
| Cow position: | chr25:19679342-19679081 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 10, 45 |
| Conread position: | 253-621 |
| Cow position: | chr25:14791752-14791380 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 113 |
| Conread position: | 253-638 |
| Cow position: | chr25:12824022-12824422 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 254-461 |
| Cow position: | chr25:26089818-26090029 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 118 |
| Conread position: | 254-515 |
| Cow position: | chr25:35333153-35332902 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 256-502 |
| Cow position: | chr25:16001533-16001779 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 57, 26 |
| Conread position: | 257-510 |
| Cow position: | chr25:24452184-24452434 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 96, 32 |
| Conread position: | 258-513 |
| Cow position: | chr25:22297024-22297286 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 266-611 |
| Cow position: | chr25:26757424-26757064 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 166 |
| Conread position: | 267-606 |
| Cow position: | chr25:40321313-40321655 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 271-564 |
| Cow position: | chr25:41364005-41364297 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 273-636 |
| Cow position: | chr25:41387542-41387899 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 6, 90 |
| Conread position: | 274-515 |
| Cow position: | chr25:24405761-24406011 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 275-621 |
| Cow position: | chr25:2111044-2110709 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 278-555 |
| Cow position: | chr25:10365779-10366060 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 227 |
| Conread position: | 285-481 |
| Cow position: | chr25:61625-61421 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 201 |
| Conread position: | 285-621 |
| Cow position: | chr25:1735350-1735686 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 211 |
| Conread position: | 286-570 |
| Cow position: | chr25:6424622-6424905 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 198 |
| Conread position: | 289-475 |
| Cow position: | chr25:6255974-6256169 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 160 |
| Conread position: | 289-516 |
| Cow position: | chr25:9754129-9754347 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 290-621 |
| Cow position: | chr25:6891566-6891903 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 296-634 |
| Cow position: | chr25:395308-394967 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 17, 153 |
| Conread position: | 296-642 |
| Cow position: | chr25:24136484-24136840 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 300-505 |
| Cow position: | chr25:12778583-12778795 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 310-513 |
| Cow position: | chr25:21266947-21266737 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 310-519 |
| Cow position: | chr25:6003053-6003268 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 318-517 |
| Cow position: | chr25:10746828-10746630 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 319-501 |
| Cow position: | chr25:15254404-15254588 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 319-569 |
| Cow position: | chr25:17975438-17975690 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 319-621 |
| Cow position: | chr25:18448769-18448462 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 320-496 |
| Cow position: | chr25:18293674-18293505 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 33, 38 |
| Conread position: | 320-610 |
| Cow position: | chr25:26238799-26238503 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 33, 191 |
| Conread position: | 327-568 |
| Cow position: | chr25:22909922-22910169 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 147 |
| Conread position: | 337-601 |
| Cow position: | chr25:35618045-35617781 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 141 |
| Conread position: | 342-507 |
| Cow position: | chr25:40407568-40407732 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 342-637 |
| Cow position: | chr25:17598587-17598884 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 11, 78 |
| Conread position: | 524-642 |
| Cow position: | chr25:24779320-24779205 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.