Cow genome map

Conread name: Pig3-SRG8014D21

Conread position: 199-515
Cow position: chr28:6862009-6861689 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 17, 35

Conread position: 210-488
Cow position: chr28:23776092-23775809 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 175
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 101, 57

Conread position: 212-614
Cow position: chr28:25806618-25806235 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 293
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 22, 75

Conread position: 223-471
Cow position: chr28:10053296-10053558 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 229-525
Cow position: chr28:25596659-25596358 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 215
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 5, 15

Conread position: 233-483
Cow position: chr28:5144498-5144754 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 9, 50

Conread position: 233-515
Cow position: chr28:13176661-13176942 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 80, 7

Conread position: 233-591
Cow position: chr28:18591294-18590934 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 10

Conread position: 240-502
Cow position: chr28:2905590-2905330 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 71, 49

Conread position: 240-549
Cow position: chr28:23007715-23008023 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 230
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 71, 125

Conread position: 240-621
Cow position: chr28:4588115-4587728 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 43

Conread position: 240-642
Cow position: chr28:21363762-21363369 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 43

Conread position: 241-462
Cow position: chr28:3714815-3714591 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 71, 48

Conread position: 241-509
Cow position: chr28:6307906-6307635 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 71, 43

Conread position: 241-548
Cow position: chr28:9390349-9390659 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 43

Conread position: 241-610
Cow position: chr28:16109953-16109595 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 41

Conread position: 241-637
Cow position: chr28:15374809-15375206 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 41

Conread position: 241-638
Cow position: chr28:4022402-4021998 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 56

Conread position: 241-638
Cow position: chr28:10681807-10682206 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 41

Conread position: 241-638
Cow position: chr28:16085339-16084942 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 42

Conread position: 241-638
Cow position: chr28:21380893-21380494 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 10

Conread position: 241-638
Cow position: chr28:22279186-22279569 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 75

Conread position: 243-621
Cow position: chr28:4536470-4536113 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 42

Conread position: 243-635
Cow position: chr28:12946961-12946563 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 42

Conread position: 247-486
Cow position: chr28:11884505-11884757 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 10, 129

Conread position: 249-504
Cow position: chr28:5236598-5236852 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 179
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 35

Conread position: 249-621
Cow position: chr28:10533925-10534302 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 35

Conread position: 249-638
Cow position: chr28:10879775-10879389 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 28

Conread position: 250-576
Cow position: chr28:7751294-7751622 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 32

Conread position: 252-507
Cow position: chr28:10172413-10172669 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 59, 32

Conread position: 252-517
Cow position: chr28:30608183-30608446 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 176
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 94, 65

Conread position: 252-576
Cow position: chr28:4880261-4880586 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 33

Conread position: 252-578
Cow position: chr28:16687030-16686710 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 228
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 38, 20

Conread position: 252-621
Cow position: chr28:33163457-33163825 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 114

Conread position: 252-637
Cow position: chr28:20313280-20312889 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 32

Conread position: 252-638
Cow position: chr28:9285367-9285748 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 114

Conread position: 253-512
Cow position: chr28:29455652-29455917 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 174
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 66, 32

Conread position: 253-639
Cow position: chr28:25700869-25701245 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 30

Conread position: 254-515
Cow position: chr28:2862869-2862596 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 57, 50

Conread position: 254-592
Cow position: chr28:2960830-2961158 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 238
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 59, 28

Conread position: 254-638
Cow position: chr28:16346530-16346901 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 262
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 59, 42

Conread position: 256-470
Cow position: chr28:2737807-2738030 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 25

Conread position: 258-543
Cow position: chr28:7228381-7228673 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 10, 43

Conread position: 261-643
Cow position: chr28:30303199-30303577 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 9

Conread position: 268-638
Cow position: chr28:10615969-10616335 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 51

Conread position: 271-621
Cow position: chr28:5817824-5817484 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 12

Conread position: 275-534
Cow position: chr28:26784481-26784748 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 250

Conread position: 276-621
Cow position: chr28:10642035-10642384 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 246

Conread position: 276-621
Cow position: chr28:14234946-14234617 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 241
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 38, 51

Conread position: 277-505
Cow position: chr28:27218306-27218067 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 33, 96

Conread position: 277-511
Cow position: chr28:16243777-16244018 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 36, 134

Conread position: 278-638
Cow position: chr28:3143907-3144272 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 7

Conread position: 285-515
Cow position: chr28:4841425-4841660 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 27, 49

Conread position: 289-643
Cow position: chr28:11451494-11451866 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 343

Conread position: 291-543
Cow position: chr28:31110036-31110294 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 22, 191

Conread position: 294-483
Cow position: chr28:8656776-8656966 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 125

Conread position: 294-636
Cow position: chr28:18354359-18354689 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 253
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 19, 40

Conread position: 294-638
Cow position: chr28:7684718-7685061 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 51

Conread position: 295-638
Cow position: chr28:19222187-19222530 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 56

Conread position: 295-638
Cow position: chr28:22308607-22308275 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 249
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 43, 22

Conread position: 296-621
Cow position: chr28:13693714-13693381 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 232
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 17, 131

Conread position: 296-638
Cow position: chr28:14151196-14150853 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 132

Conread position: 296-642
Cow position: chr28:23530832-23530473 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 159

Conread position: 297-621
Cow position: chr28:15272300-15272627 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 213

Conread position: 298-638
Cow position: chr28:18717162-18717510 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 215

Conread position: 300-513
Cow position: chr28:21873729-21873511 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 82

Conread position: 310-636
Cow position: chr28:13371227-13371559 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 88

Conread position: 310-638
Cow position: chr28:12048757-12049098 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 168

Conread position: 312-635
Cow position: chr28:11355976-11356310 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 229
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 9, 38

Conread position: 316-598
Cow position: chr28:16441323-16441044 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 90

Conread position: 318-491
Cow position: chr28:9636519-9636696 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 35, 48

Conread position: 318-494
Cow position: chr28:25498568-25498746 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 10

Conread position: 318-620
Cow position: chr28:3246269-3245976 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 35, 41

Conread position: 319-531
Cow position: chr28:20963595-20963807 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 163

Conread position: 319-544
Cow position: chr28:16450772-16450981 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 34, 16

Conread position: 319-620
Cow position: chr28:13726098-13725787 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 209
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 95, 162

Conread position: 319-635
Cow position: chr28:32300423-32300749 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 227
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 28, 305

Conread position: 320-637
Cow position: chr28:20759984-20760307 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 43

Conread position: 322-508
Cow position: chr28:32813060-32813255 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 27, 134

Conread position: 324-646
Cow position: chr28:3161138-3161478 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 247
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 21, 33

Conread position: 327-621
Cow position: chr28:8372397-8372103 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 10

Conread position: 331-556
Cow position: chr28:16879352-16879567 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 176
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 31, 77

Conread position: 332-471
Cow position: chr28:8628856-8628996 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 342-487
Cow position: chr28:33036557-33036701 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 25

Conread position: 342-581
Cow position: chr28:17637957-17638191 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 10, 17

Conread position: 342-637
Cow position: chr28:16388541-16388267 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 11, 24

Conread position: 342-638
Cow position: chr28:3480182-3479880 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 279

Conread position: 342-638
Cow position: chr28:14657612-14657312 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 200

Conread position: 342-639
Cow position: chr28:24605900-24606198 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 11, 107

Conread position: 347-638
Cow position: chr28:17316768-17316480 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 135

Conread position: 350-634
Cow position: chr28:30967366-30967085 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 192
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 234, 7

Conread position: 353-636
Cow position: chr28:18180236-18180510 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 193
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 8, 146

Conread position: 357-531
Cow position: chr28:19133682-19133503 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 359-514
Cow position: chr28:7389220-7389064 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 42, 95

Conread position: 361-568
Cow position: chr28:12938891-12938688 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 143, 0

Conread position: 372-638
Cow position: chr28:22500605-22500864 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 66

Conread position: 375-539
Cow position: chr28:8103511-8103674 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 136
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 26, 96

Conread position: 377-638
Cow position: chr28:10977741-10977479 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 128

Conread position: 514-638
Cow position: chr28:19393614-19393488 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 71, 0

Show alignments to all cow chromosomes.