Non-Coding RNA Search

Cow genome map


           Conread name:
           Pig3-SRG8015N22
        

               Conread position:
               10-548
               

               Cow position:
               chr17:33999466-33998941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               367
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               70, 137
               

               Conread position:
               39-667
               

               Cow position:
               chr17:5423481-5422851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               644
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 218
               

               Conread position:
               47-680
               

               Cow position:
               chr17:1563176-1562551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               653
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 193
               

               Conread position:
               52-684
               

               Cow position:
               chr17:908350-908984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               655
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 20
               

               Conread position:
               85-421
               

               Cow position:
               chr17:32554373-32554043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 126
               

               Conread position:
               98-446
               

               Cow position:
               chr17:13672419-13672064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               31, 141
               

               Conread position:
               128-636
               

               Cow position:
               chr17:9746214-9746706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               366, 66
               

               Conread position:
               135-588
               

               Cow position:
               chr17:11172923-11172471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 11
               

               Conread position:
               141-667
               

               Cow position:
               chr17:9698000-9697456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 137
               

               Conread position:
               154-685
               

               Cow position:
               chr17:7811020-7810502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 55
               

               Conread position:
               155-520
               

               Cow position:
               chr17:6623978-6624334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 54
               

               Conread position:
               159-692
               

               Cow position:
               chr17:6423482-6424006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 16
               

               Conread position:
               163-676
               

               Cow position:
               chr17:40741369-40741890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 183
               

               Conread position:
               176-435
               

               Cow position:
               chr17:36817679-36817937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               220, 140
               

               Conread position:
               176-685
               

               Cow position:
               chr17:24787286-24786780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 196
               

               Conread position:
               178-684
               

               Cow position:
               chr17:11832392-11831874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 32
               

               Conread position:
               185-514
               

               Cow position:
               chr17:9777997-9778315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 130
               

               Conread position:
               185-684
               

               Cow position:
               chr17:15333963-15333440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               260, 25
               

               Conread position:
               185-696
               

               Cow position:
               chr17:36790893-36791380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 63
               

               Conread position:
               186-696
               

               Cow position:
               chr17:24587365-24587880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 256
               

               Conread position:
               190-610
               

               Cow position:
               chr17:12220187-12219772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 179
               

               Conread position:
               195-684
               

               Cow position:
               chr17:20157377-20157852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 26
               

               Conread position:
               197-611
               

               Cow position:
               chr17:17405900-17406303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               244, 12
               

               Conread position:
               198-460
               

               Cow position:
               chr17:8279947-8279688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               195, 22
               

               Conread position:
               199-419
               

               Cow position:
               chr17:1359037-1358822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               205-608
               

               Cow position:
               chr17:5900153-5900534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 10
               

               Conread position:
               206-421
               

               Cow position:
               chr17:29040699-29040484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               39, 130
               

               Conread position:
               207-669
               

               Cow position:
               chr17:18860951-18860515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 25
               

               Conread position:
               210-685
               

               Cow position:
               chr17:12325975-12325525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 99
               

               Conread position:
               211-425
               

               Cow position:
               chr17:16399025-16398807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               211-611
               

               Cow position:
               chr17:26764786-26765191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 36
               

               Conread position:
               211-623
               

               Cow position:
               chr17:27047935-27048335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 72
               

               Conread position:
               212-600
               

               Cow position:
               chr17:41029725-41030094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 111
               

               Conread position:
               213-476
               

               Cow position:
               chr17:25141240-25141485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               131, 20
               

               Conread position:
               214-389
               

               Cow position:
               chr17:8644812-8644989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               152
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 74
               

               Conread position:
               214-404
               

               Cow position:
               chr17:43527756-43527942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               128, 33
               

               Conread position:
               214-410
               

               Cow position:
               chr17:3387069-3387258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               150, 73
               

               Conread position:
               214-418
               

               Cow position:
               chr17:23337239-23337038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               163
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               32, 109
               

               Conread position:
               214-419
               

               Cow position:
               chr17:24876913-24877122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               214-428
               

               Cow position:
               chr17:16117654-16117430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               214-428
               

               Cow position:
               chr17:25168088-25168306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 31
               

               Conread position:
               214-431
               

               Cow position:
               chr17:27667419-27667198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 217
               

               Conread position:
               214-441
               

               Cow position:
               chr17:30204430-30204658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               45, 122
               

               Conread position:
               214-442
               

               Cow position:
               chr17:1568401-1568170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               136, 45
               

               Conread position:
               214-442
               

               Cow position:
               chr17:4606745-4606959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               214-442
               

               Cow position:
               chr17:41393937-41393711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               152, 22
               

               Conread position:
               214-446
               

               Cow position:
               chr17:3306643-3306873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 33
               

               Conread position:
               214-467
               

               Cow position:
               chr17:21874541-21874278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               195
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               130, 88
               

               Conread position:
               214-482
               

               Cow position:
               chr17:1080779-1081032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               175, 33
               

               Conread position:
               214-483
               

               Cow position:
               chr17:41400194-41399932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               187
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               152, 22
               

               Conread position:
               214-483
               

               Cow position:
               chr17:42347446-42347184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               214-487
               

               Cow position:
               chr17:27305936-27306204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               150, 21
               

               Conread position:
               214-489
               

               Cow position:
               chr17:1295796-1295525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 100
               

               Conread position:
               214-515
               

               Cow position:
               chr17:10473610-10473905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               136, 56
               

               Conread position:
               214-515
               

               Cow position:
               chr17:26182997-26183301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 108
               

               Conread position:
               214-548
               

               Cow position:
               chr17:20083737-20083417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               248
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               53, 48
               

               Conread position:
               214-548
               

               Cow position:
               chr17:25145535-25145223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               27, 132
               

               Conread position:
               214-555
               

               Cow position:
               chr17:25542037-25541705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 47
               

               Conread position:
               214-562
               

               Cow position:
               chr17:32651391-32651734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 115
               

               Conread position:
               214-591
               

               Cow position:
               chr17:5000799-5000440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               351, 33
               

               Conread position:
               214-594
               

               Cow position:
               chr17:30539474-30539119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 105
               

               Conread position:
               214-604
               

               Cow position:
               chr17:553189-552806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               279
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               78, 26
               

               Conread position:
               214-606
               

               Cow position:
               chr17:21335923-21335530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 225
               

               Conread position:
               214-606
               

               Cow position:
               chr17:39735961-39736337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               248, 33
               

               Conread position:
               214-608
               

               Cow position:
               chr17:36331191-36330794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 68
               

               Conread position:
               214-611
               

               Cow position:
               chr17:1061287-1060877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 78
               

               Conread position:
               214-611
               

               Cow position:
               chr17:38832817-38833211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 228
               

               Conread position:
               214-615
               

               Cow position:
               chr17:17060910-17060511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 78
               

               Conread position:
               214-617
               

               Cow position:
               chr17:35126489-35126879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               245, 89
               

               Conread position:
               214-618
               

               Cow position:
               chr17:15300095-15299705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               281
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               147, 108
               

               Conread position:
               214-619
               

               Cow position:
               chr17:8079092-8079490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 62
               

               Conread position:
               214-619
               

               Cow position:
               chr17:23245986-23246376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 55
               

               Conread position:
               214-641
               

               Cow position:
               chr17:1493381-1492951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 66
               

               Conread position:
               214-641
               

               Cow position:
               chr17:18109311-18108891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 98
               

               Conread position:
               214-648
               

               Cow position:
               chr17:6566248-6566687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 14
               

               Conread position:
               214-648
               

               Cow position:
               chr17:30529761-30529347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 77
               

               Conread position:
               214-667
               

               Cow position:
               chr17:23101436-23100995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 165
               

               Conread position:
               214-667
               

               Cow position:
               chr17:29080341-29080764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               259, 33
               

               Conread position:
               214-669
               

               Cow position:
               chr17:28285251-28284807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 33
               

               Conread position:
               214-671
               

               Cow position:
               chr17:14033872-14033410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 194
               

               Conread position:
               214-676
               

               Cow position:
               chr17:20993265-20992802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 96
               

               Conread position:
               214-676
               

               Cow position:
               chr17:29715411-29714978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 103
               

               Conread position:
               214-677
               

               Cow position:
               chr17:21115173-21114718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 90
               

               Conread position:
               214-677
               

               Cow position:
               chr17:27795423-27795892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 71
               

               Conread position:
               214-680
               

               Cow position:
               chr17:20022742-20022274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 95
               

               Conread position:
               214-680
               

               Cow position:
               chr17:20848306-20848768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 33
               

               Conread position:
               214-680
               

               Cow position:
               chr17:22032908-22032448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 33
               

               Conread position:
               214-680
               

               Cow position:
               chr17:24973725-24974183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 231
               

               Conread position:
               214-682
               

               Cow position:
               chr17:11664813-11664335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 33
               

               Conread position:
               214-683
               

               Cow position:
               chr17:24883789-24883327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 54
               

               Conread position:
               214-683
               

               Cow position:
               chr17:33288879-33288415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 87
               

               Conread position:
               214-684
               

               Cow position:
               chr17:17059215-17059663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               245, 33
               

               Conread position:
               214-684
               

               Cow position:
               chr17:21973356-21972884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 33
               

               Conread position:
               214-684
               

               Cow position:
               chr17:29292594-29292145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 131
               

               Conread position:
               214-684
               

               Cow position:
               chr17:32989268-32989718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 39
               

               Conread position:
               214-684
               

               Cow position:
               chr17:32993838-32993382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 39
               

               Conread position:
               214-684
               

               Cow position:
               chr17:36275132-36275581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 94
               

               Conread position:
               214-684
               

               Cow position:
               chr17:38614731-38615207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 121
               

               Conread position:
               214-685
               

               Cow position:
               chr17:15664444-15664921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 101
               

               Conread position:
               214-686
               

               Cow position:
               chr17:12929768-12929282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 238
               

               Conread position:
               214-686
               

               Cow position:
               chr17:21004056-21003585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 244
               

               Conread position:
               214-687
               

               Cow position:
               chr17:20033141-20032660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 213
               

               Conread position:
               214-688
               

               Cow position:
               chr17:14026140-14025658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 63
               

               Conread position:
               214-693
               

               Cow position:
               chr17:3388636-3389086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               245, 33
               

               Conread position:
               214-693
               

               Cow position:
               chr17:11397445-11397919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 26
               

               Conread position:
               214-693
               

               Cow position:
               chr17:34948415-34948891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 119
               

               Conread position:
               214-694
               

               Cow position:
               chr17:5898749-5898270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 33
               

               Conread position:
               214-694
               

               Cow position:
               chr17:32138625-32138159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 81
               

               Conread position:
               214-695
               

               Cow position:
               chr17:18720673-18720196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 95
               

               Conread position:
               214-696
               

               Cow position:
               chr17:5224178-5224633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 85
               

               Conread position:
               214-696
               

               Cow position:
               chr17:15103113-15102632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 184
               

               Conread position:
               214-696
               

               Cow position:
               chr17:25815383-25815847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 96
               

               Conread position:
               214-696
               

               Cow position:
               chr17:32027687-32027190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 212
               

               Conread position:
               214-696
               

               Cow position:
               chr17:34079323-34078861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 106
               

               Conread position:
               214-697
               

               Cow position:
               chr17:5280867-5280393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 71
               

               Conread position:
               214-697
               

               Cow position:
               chr17:6936889-6936420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 103
               

               Conread position:
               214-697
               

               Cow position:
               chr17:11618355-11618848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 141
               

               Conread position:
               214-697
               

               Cow position:
               chr17:16446654-16446169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 71
               

               Conread position:
               214-697
               

               Cow position:
               chr17:17179815-17180304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 23
               

               Conread position:
               214-697
               

               Cow position:
               chr17:18201549-18202018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 87
               

               Conread position:
               214-697
               

               Cow position:
               chr17:20800591-20801072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 99
               

               Conread position:
               214-697
               

               Cow position:
               chr17:23063486-23063982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 111
               

               Conread position:
               214-697
               

               Cow position:
               chr17:25189055-25189547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 33
               

               Conread position:
               214-697
               

               Cow position:
               chr17:26818677-26818215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 33
               

               Conread position:
               215-399
               

               Cow position:
               chr17:36533435-36533616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               11, 107
               

               Conread position:
               215-438
               

               Cow position:
               chr17:15363781-15363563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               180, 25
               

               Conread position:
               215-445
               

               Cow position:
               chr17:3843263-3843485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               181
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               218, 36
               

               Conread position:
               215-445
               

               Cow position:
               chr17:11056599-11056365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 97
               

               Conread position:
               215-468
               

               Cow position:
               chr17:5228919-5229167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               131, 97
               

               Conread position:
               215-474
               

               Cow position:
               chr17:12216301-12216038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 243
               

               Conread position:
               215-476
               

               Cow position:
               chr17:5041900-5041647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               30, 51
               

               Conread position:
               215-513
               

               Cow position:
               chr17:24549948-24550248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 32
               

               Conread position:
               215-521
               

               Cow position:
               chr17:20839782-20839487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 32
               

               Conread position:
               215-550
               

               Cow position:
               chr17:37163751-37163424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 215
               

               Conread position:
               215-560
               

               Cow position:
               chr17:28539812-28540145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 77
               

               Conread position:
               215-569
               

               Cow position:
               chr17:26084811-26085150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               176, 32
               

               Conread position:
               215-591
               

               Cow position:
               chr17:40421445-40421819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 32
               

               Conread position:
               215-601
               

               Cow position:
               chr17:21495153-21495529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 32
               

               Conread position:
               215-609
               

               Cow position:
               chr17:21755665-21755268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 115
               

               Conread position:
               215-617
               

               Cow position:
               chr17:9117419-9117816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 243
               

               Conread position:
               215-620
               

               Cow position:
               chr17:1410465-1410060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 32
               

               Conread position:
               215-626
               

               Cow position:
               chr17:27819078-27819478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               287
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               129, 18
               

               Conread position:
               215-684
               

               Cow position:
               chr17:15684281-15684747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 112
               

               Conread position:
               215-684
               

               Cow position:
               chr17:16371028-16371501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 32
               

               Conread position:
               215-684
               

               Cow position:
               chr17:17410074-17410544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 62
               

               Conread position:
               215-684
               

               Cow position:
               chr17:22775165-22775614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 32
               

               Conread position:
               215-684
               

               Cow position:
               chr17:31481266-31480785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 25
               

               Conread position:
               215-694
               

               Cow position:
               chr17:40771606-40772083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 233
               

               Conread position:
               215-695
               

               Cow position:
               chr17:12289639-12289156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 109
               

               Conread position:
               215-695
               

               Cow position:
               chr17:24077180-24077643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 42
               

               Conread position:
               215-696
               

               Cow position:
               chr17:7697832-7698306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 42
               

               Conread position:
               216-446
               

               Cow position:
               chr17:21017571-21017803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 162
               

               Conread position:
               216-451
               

               Cow position:
               chr17:4721264-4721504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               126, 93
               

               Conread position:
               216-520
               

               Cow position:
               chr17:41290240-41289944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 31
               

               Conread position:
               216-606
               

               Cow position:
               chr17:30718642-30718255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 114
               

               Conread position:
               216-613
               

               Cow position:
               chr17:25796563-25796167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 227
               

               Conread position:
               216-615
               

               Cow position:
               chr17:8544087-8544475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 38
               

               Conread position:
               216-617
               

               Cow position:
               chr17:40289226-40288827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 34
               

               Conread position:
               216-620
               

               Cow position:
               chr17:8926443-8926041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               274
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               126, 236
               

               Conread position:
               216-666
               

               Cow position:
               chr17:39771173-39771628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 155
               

               Conread position:
               216-680
               

               Cow position:
               chr17:20093347-20092889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 53
               

               Conread position:
               216-692
               

               Cow position:
               chr17:11102017-11101567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 118
               

               Conread position:
               216-694
               

               Cow position:
               chr17:30665051-30665525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 17
               

               Conread position:
               216-697
               

               Cow position:
               chr17:14003606-14004083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 64
               

               Conread position:
               216-697
               

               Cow position:
               chr17:29472252-29472716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 118
               

               Conread position:
               217-462
               

               Cow position:
               chr17:3042257-3042496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               185, 115
               

               Conread position:
               217-524
               

               Cow position:
               chr17:2034323-2034611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               278, 91
               

               Conread position:
               217-604
               

               Cow position:
               chr17:11296413-11296813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 326
               

               Conread position:
               217-642
               

               Cow position:
               chr17:18495731-18495323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               217-680
               

               Cow position:
               chr17:17222122-17222583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 32
               

               Conread position:
               217-684
               

               Cow position:
               chr17:9853764-9854226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 175
               

               Conread position:
               217-695
               

               Cow position:
               chr17:20780290-20780778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               248, 28
               

               Conread position:
               217-697
               

               Cow position:
               chr17:20234005-20234453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 81
               

               Conread position:
               217-697
               

               Cow position:
               chr17:32419340-32418861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 206
               

               Conread position:
               218-618
               

               Cow position:
               chr17:24553783-24554172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 184
               

               Conread position:
               218-678
               

               Cow position:
               chr17:26230719-26231203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 28
               

               Conread position:
               218-697
               

               Cow position:
               chr17:42419512-42419960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 29
               

               Conread position:
               219-620
               

               Cow position:
               chr17:18592219-18592620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 182
               

               Conread position:
               220-445
               

               Cow position:
               chr17:18245856-18246083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               120, 94
               

               Conread position:
               220-459
               

               Cow position:
               chr17:33926340-33926110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               120, 26
               

               Conread position:
               220-696
               

               Cow position:
               chr17:32472010-32471534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 27
               

               Conread position:
               225-421
               

               Cow position:
               chr17:3182798-3182603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               165
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 22
               

               Conread position:
               225-424
               

               Cow position:
               chr17:3498878-3498679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               73, 99
               

               Conread position:
               225-428
               

               Cow position:
               chr17:10220267-10220463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               119, 22
               

               Conread position:
               225-432
               

               Cow position:
               chr17:20835379-20835589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               170
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               225-433
               

               Cow position:
               chr17:38994171-38994384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               41, 31
               

               Conread position:
               225-438
               

               Cow position:
               chr17:5380752-5380969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               172
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               23, 58
               

               Conread position:
               225-445
               

               Cow position:
               chr17:5896124-5895905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               119, 22
               

               Conread position:
               225-466
               

               Cow position:
               chr17:2079547-2079788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               110, 8
               

               Conread position:
               225-473
               

               Cow position:
               chr17:1653902-1653659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               39, 21
               

               Conread position:
               225-489
               

               Cow position:
               chr17:21031574-21031833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               144, 20
               

               Conread position:
               225-582
               

               Cow position:
               chr17:27697906-27697564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               252, 22
               

               Conread position:
               225-584
               

               Cow position:
               chr17:14848737-14848405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 95
               

               Conread position:
               225-585
               

               Cow position:
               chr17:3503366-3503723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 93
               

               Conread position:
               225-591
               

               Cow position:
               chr17:27142542-27142893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 191
               

               Conread position:
               225-592
               

               Cow position:
               chr17:20870307-20869946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 18
               

               Conread position:
               225-597
               

               Cow position:
               chr17:39012504-39012871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               259
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               114, 222
               

               Conread position:
               225-599
               

               Cow position:
               chr17:8690654-8690296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 63
               

               Conread position:
               225-609
               

               Cow position:
               chr17:2662195-2662589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 240
               

               Conread position:
               225-613
               

               Cow position:
               chr17:20126407-20126767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 24
               

               Conread position:
               225-616
               

               Cow position:
               chr17:32366072-32366466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 14
               

               Conread position:
               225-618
               

               Cow position:
               chr17:24752508-24752153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               97, 22
               

               Conread position:
               225-626
               

               Cow position:
               chr17:24580513-24580113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 22
               

               Conread position:
               225-647
               

               Cow position:
               chr17:45881687-45882105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               270
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               118, 22
               

               Conread position:
               225-668
               

               Cow position:
               chr17:25097249-25097672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 22
               

               Conread position:
               225-673
               

               Cow position:
               chr17:7436952-7437404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               299
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               26, 64
               

               Conread position:
               225-676
               

               Cow position:
               chr17:5767700-5768130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 118
               

               Conread position:
               225-680
               

               Cow position:
               chr17:13244240-13243814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 51
               

               Conread position:
               225-680
               

               Cow position:
               chr17:21293259-21292798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 99
               

               Conread position:
               225-680
               

               Cow position:
               chr17:24004181-24004613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 8
               

               Conread position:
               225-680
               

               Cow position:
               chr17:33933951-33933508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 87
               

               Conread position:
               225-684
               

               Cow position:
               chr17:11216097-11215649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 87
               

               Conread position:
               225-684
               

               Cow position:
               chr17:30713139-30713590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 55
               

               Conread position:
               225-694
               

               Cow position:
               chr17:22563973-22564431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 15
               

               Conread position:
               225-694
               

               Cow position:
               chr17:40331555-40332033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 22
               

               Conread position:
               225-695
               

               Cow position:
               chr17:25875198-25875654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               333
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               139, 87
               

               Conread position:
               225-696
               

               Cow position:
               chr17:14050406-14049949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 8
               

               Conread position:
               225-697
               

               Cow position:
               chr17:10528955-10528473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 235
               

               Conread position:
               225-697
               

               Cow position:
               chr17:21959893-21959425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 21
               

               Conread position:
               225-697
               

               Cow position:
               chr17:33271893-33271414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               335
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               118, 65
               

               Conread position:
               225-697
               

               Cow position:
               chr17:33792968-33793408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 87
               

               Conread position:
               226-411
               

               Cow position:
               chr17:10649636-10649817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               116, 91
               

               Conread position:
               226-440
               

               Cow position:
               chr17:18884560-18884335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               69, 21
               

               Conread position:
               226-505
               

               Cow position:
               chr17:9079399-9079141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               144, 81
               

               Conread position:
               226-572
               

               Cow position:
               chr17:3781831-3782172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 105
               

               Conread position:
               226-602
               

               Cow position:
               chr17:13143903-13143548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 98
               

               Conread position:
               226-617
               

               Cow position:
               chr17:4225704-4225327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 114
               

               Conread position:
               226-639
               

               Cow position:
               chr17:18472966-18473356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 28
               

               Conread position:
               226-692
               

               Cow position:
               chr17:32457793-32457321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               306
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               81, 110
               

               Conread position:
               226-693
               

               Cow position:
               chr17:29083994-29084420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 28
               

               Conread position:
               227-413
               

               Cow position:
               chr17:21710293-21710479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               153
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               112, 87
               

               Conread position:
               227-489
               

               Cow position:
               chr17:40892939-40893197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               8, 21
               

               Conread position:
               227-507
               

               Cow position:
               chr17:1526565-1526286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               117, 27
               

               Conread position:
               227-553
               

               Cow position:
               chr17:25181361-25181038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               117, 225
               

               Conread position:
               227-593
               

               Cow position:
               chr17:5688560-5688223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               140, 75
               

               Conread position:
               227-594
               

               Cow position:
               chr17:7760675-7760322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 96
               

               Conread position:
               227-597
               

               Cow position:
               chr17:11156705-11156340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 192
               

               Conread position:
               227-676
               

               Cow position:
               chr17:25900987-25901444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 24
               

               Conread position:
               227-680
               

               Cow position:
               chr17:13922261-13922722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 222
               

               Conread position:
               227-680
               

               Cow position:
               chr17:21739096-21738625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 228
               

               Conread position:
               227-685
               

               Cow position:
               chr17:11281319-11280846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 52
               

               Conread position:
               227-697
               

               Cow position:
               chr17:7132667-7132167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 254
               

               Conread position:
               228-512
               

               Cow position:
               chr17:3471210-3471489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               210
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               107, 80
               

               Conread position:
               228-573
               

               Cow position:
               chr17:31231325-31230993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 71
               

               Conread position:
               229-428
               

               Cow position:
               chr17:966949-966751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               164
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               115, 87
               

               Conread position:
               229-446
               

               Cow position:
               chr17:19455513-19455305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               201, 56
               

               Conread position:
               229-452
               

               Cow position:
               chr17:22781482-22781706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               177
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               115, 16
               

               Conread position:
               229-487
               

               Cow position:
               chr17:242425-242682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               17, 96
               

               Conread position:
               229-511
               

               Cow position:
               chr17:33291019-33290741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 5
               

               Conread position:
               229-516
               

               Cow position:
               chr17:27765071-27765349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 83
               

               Conread position:
               230-489
               

               Cow position:
               chr17:2839681-2839955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               197
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               89, 231
               

               Conread position:
               230-573
               

               Cow position:
               chr17:38646859-38647191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 17
               

               Conread position:
               230-603
               

               Cow position:
               chr17:25032681-25032322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 109
               

               Conread position:
               230-641
               

               Cow position:
               chr17:2810412-2810829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 90
               

               Conread position:
               230-677
               

               Cow position:
               chr17:10446707-10447150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 164
               

               Conread position:
               230-684
               

               Cow position:
               chr17:25128558-25128110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 49
               

               Conread position:
               230-695
               

               Cow position:
               chr17:32279116-32278648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 212
               

               Conread position:
               231-602
               

               Cow position:
               chr17:21243994-21243631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 16
               

               Conread position:
               232-680
               

               Cow position:
               chr17:1035811-1035354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 222
               

               Conread position:
               232-683
               

               Cow position:
               chr17:27429371-27429799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 151
               

               Conread position:
               233-671
               

               Cow position:
               chr17:33052657-33053085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 87
               

               Conread position:
               234-553
               

               Cow position:
               chr17:21628277-21628588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 96
               

               Conread position:
               236-694
               

               Cow position:
               chr17:29356423-29355988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               319
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               15, 103
               

               Conread position:
               238-479
               

               Cow position:
               chr17:5246695-5246930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               106, 9
               

               Conread position:
               238-528
               

               Cow position:
               chr17:12059291-12059007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 9
               

               Conread position:
               239-694
               

               Cow position:
               chr17:11278233-11277776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 48
               

               Conread position:
               240-641
               

               Cow position:
               chr17:24148979-24149382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 16
               

               Conread position:
               242-671
               

               Cow position:
               chr17:43717510-43717109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               401, 97
               

               Conread position:
               243-487
               

               Cow position:
               chr17:35311225-35311471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               87, 204
               

               Conread position:
               243-614
               

               Cow position:
               chr17:9911567-9911928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 83
               

               Conread position:
               243-680
               

               Cow position:
               chr17:21599878-21599440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               300
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               99, 42
               

               Conread position:
               243-696
               

               Cow position:
               chr17:24824056-24824502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               254, 79
               

               Conread position:
               244-460
               

               Cow position:
               chr17:18824595-18824812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               15, 11
               

               Conread position:
               244-475
               

               Cow position:
               chr17:4436426-4436199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 68
               

               Conread position:
               244-482
               

               Cow position:
               chr17:26881532-26881292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               100, 206
               

               Conread position:
               244-489
               

               Cow position:
               chr17:32950077-32950321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 205
               

               Conread position:
               244-537
               

               Cow position:
               chr17:7648025-7648306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               126, 78
               

               Conread position:
               244-596
               

               Cow position:
               chr17:41892263-41891909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 127
               

               Conread position:
               244-601
               

               Cow position:
               chr17:43141911-43141551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               258
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               99, 69
               

               Conread position:
               244-680
               

               Cow position:
               chr17:20072270-20071863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 68
               

               Conread position:
               244-680
               

               Cow position:
               chr17:33275941-33275519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 100
               

               Conread position:
               244-684
               

               Cow position:
               chr17:4213561-4213981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 120
               

               Conread position:
               244-684
               

               Cow position:
               chr17:12447593-12447158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 25
               

               Conread position:
               245-648
               

               Cow position:
               chr17:12108609-12109011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 13
               

               Conread position:
               247-415
               

               Cow position:
               chr17:3518444-3518277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               119, 60
               

               Conread position:
               247-434
               

               Cow position:
               chr17:37857926-37857729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               39, 92
               

               Conread position:
               247-445
               

               Cow position:
               chr17:21697540-21697742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               160
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               247-599
               

               Cow position:
               chr17:37480185-37479846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               247
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               123, 97
               

               Conread position:
               247-601
               

               Cow position:
               chr17:22806733-22806385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 158
               

               Conread position:
               247-695
               

               Cow position:
               chr17:4601740-4601307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 169
               

               Conread position:
               248-668
               

               Cow position:
               chr17:24773492-24773904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 79
               

               Conread position:
               248-697
               

               Cow position:
               chr17:25999925-26000379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 200
               

               Conread position:
               249-667
               

               Cow position:
               chr17:12536658-12536247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               245, 82
               

               Conread position:
               249-694
               

               Cow position:
               chr17:24490331-24490797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 181
               

               Conread position:
               250-506
               

               Cow position:
               chr17:34208009-34207751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               250-623
               

               Cow position:
               chr17:10271302-10271670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               94, 201
               

               Conread position:
               251-454
               

               Cow position:
               chr17:4824306-4824511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               90, 50
               

               Conread position:
               251-681
               

               Cow position:
               chr17:25611905-25612328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               249, 73
               

               Conread position:
               253-668
               

               Cow position:
               chr17:1063003-1063396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 71
               

               Conread position:
               253-695
               

               Cow position:
               chr17:36454950-36454521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               313
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               95, 20
               

               Conread position:
               255-618
               

               Cow position:
               chr17:15340922-15340577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 58
               

               Conread position:
               256-696
               

               Cow position:
               chr17:12946549-12946103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 14
               

               Conread position:
               257-513
               

               Cow position:
               chr17:10510842-10510586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 15
               

               Conread position:
               257-607
               

               Cow position:
               chr17:3577356-3577701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 159
               

               Conread position:
               257-648
               

               Cow position:
               chr17:36203672-36203280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               274
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               107, 65
               

               Conread position:
               258-610
               

               Cow position:
               chr17:265475-265837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 170
               

               Conread position:
               259-617
               

               Cow position:
               chr17:29157238-29157590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 77
               

               Conread position:
               259-696
               

               Cow position:
               chr17:20932148-20932583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 63
               

               Conread position:
               260-418
               

               Cow position:
               chr17:3442847-3442690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               84, 64
               

               Conread position:
               260-692
               

               Cow position:
               chr17:8837128-8836699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 46
               

               Conread position:
               263-604
               

               Cow position:
               chr17:20990370-20990029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 59
               

               Conread position:
               265-467
               

               Cow position:
               chr17:28847842-28847638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               79, 109
               

               Conread position:
               265-624
               

               Cow position:
               chr17:12590989-12591354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 186
               

               Conread position:
               265-681
               

               Cow position:
               chr17:3467595-3467992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 70
               

               Conread position:
               265-693
               

               Cow position:
               chr17:10459110-10458681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 53
               

               Conread position:
               265-697
               

               Cow position:
               chr17:7594986-7595402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               298
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               79, 26
               

               Conread position:
               266-618
               

               Cow position:
               chr17:32273857-32273512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 42
               

               Conread position:
               267-684
               

               Cow position:
               chr17:1634654-1634250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 18
               

               Conread position:
               268-550
               

               Cow position:
               chr17:5398606-5398334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               101, 5
               

               Conread position:
               268-617
               

               Cow position:
               chr17:24821695-24822035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 54
               

               Conread position:
               271-550
               

               Cow position:
               chr17:21918042-21917766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               207
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               98, 68
               

               Conread position:
               271-696
               

               Cow position:
               chr17:30359310-30359703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               302
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               106, 25
               

               Conread position:
               272-604
               

               Cow position:
               chr17:38363141-38362837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               238
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               273-488
               

               Cow position:
               chr17:44561250-44561029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               36, 58
               

               Conread position:
               273-678
               

               Cow position:
               chr17:21415005-21414592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 175
               

               Conread position:
               273-678
               

               Cow position:
               chr17:21437488-21437075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               289
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               72, 175
               

               Conread position:
               273-680
               

               Cow position:
               chr17:17683064-17682674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 48
               

               Conread position:
               274-605
               

               Cow position:
               chr17:979318-979007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 49
               

               Conread position:
               275-684
               

               Cow position:
               chr17:4106150-4105748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 49
               

               Conread position:
               275-684
               

               Cow position:
               chr17:4121886-4121483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 49
               

               Conread position:
               277-512
               

               Cow position:
               chr17:21298062-21298302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               67, 32
               

               Conread position:
               277-680
               

               Cow position:
               chr17:7142702-7143097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 47
               

               Conread position:
               277-697
               

               Cow position:
               chr17:27058715-27058292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 55
               

               Conread position:
               278-500
               

               Cow position:
               chr17:1353235-1353455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               75, 149
               

               Conread position:
               278-687
               

               Cow position:
               chr17:25916731-25917133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 174
               

               Conread position:
               280-458
               

               Cow position:
               chr17:38613087-38613266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               87, 55
               

               Conread position:
               280-530
               

               Cow position:
               chr17:27549987-27549740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               61, 43
               

               Conread position:
               280-676
               

               Cow position:
               chr17:28467977-28468360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 52
               

               Conread position:
               281-421
               

               Cow position:
               chr17:20928752-20928896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               281-476
               

               Cow position:
               chr17:40792065-40792259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               61, 53
               

               Conread position:
               281-562
               

               Cow position:
               chr17:14762277-14762003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               62, 31
               

               Conread position:
               282-695
               

               Cow position:
               chr17:18146025-18146443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 159
               

               Conread position:
               283-506
               

               Cow position:
               chr17:10491367-10491590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               62, 106
               

               Conread position:
               283-549
               

               Cow position:
               chr17:31701281-31701537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               61, 49
               

               Conread position:
               285-693
               

               Cow position:
               chr17:4786650-4786227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               298
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               55, 28
               

               Conread position:
               285-694
               

               Cow position:
               chr17:24559145-24559545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               285
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               85, 40
               

               Conread position:
               287-479
               

               Cow position:
               chr17:484451-484634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               287-522
               

               Cow position:
               chr17:267736-267505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               55, 30
               

               Conread position:
               287-563
               

               Cow position:
               chr17:4967958-4968232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 115
               

               Conread position:
               287-676
               

               Cow position:
               chr17:31037532-31037141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 37
               

               Conread position:
               288-484
               

               Cow position:
               chr17:5382137-5381953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               82, 36
               

               Conread position:
               289-697
               

               Cow position:
               chr17:42259050-42259455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               283
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               107, 46
               

               Conread position:
               291-697
               

               Cow position:
               chr17:25117742-25118141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 13
               

               Conread position:
               292-633
               

               Cow position:
               chr17:6328961-6329299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 161
               

               Conread position:
               293-660
               

               Cow position:
               chr17:20874249-20874622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 24
               

               Conread position:
               298-697
               

               Cow position:
               chr17:24928338-24928737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               66, 24
               

               Conread position:
               304-696
               

               Cow position:
               chr17:30728382-30728762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 70
               

               Conread position:
               305-626
               

               Cow position:
               chr17:7614516-7614195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               39, 81
               

               Conread position:
               305-695
               

               Cow position:
               chr17:32280531-32280924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 137
               

               Conread position:
               305-697
               

               Cow position:
               chr17:26233964-26233568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               39, 89
               

               Conread position:
               308-601
               

               Cow position:
               chr17:24880613-24880898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               215, 62
               

               Conread position:
               308-602
               

               Cow position:
               chr17:36500670-36500958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               40, 134
               

               Conread position:
               308-684
               

               Cow position:
               chr17:40673251-40673619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 107
               

               Conread position:
               309-628
               

               Cow position:
               chr17:33411155-33410825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               35, 9
               

               Conread position:
               310-597
               

               Cow position:
               chr17:32018012-32017738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               15, 188
               

               Conread position:
               312-641
               

               Cow position:
               chr17:1113754-1114093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               32, 136
               

               Conread position:
               312-684
               

               Cow position:
               chr17:40393876-40394263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               23, 123
               

               Conread position:
               312-697
               

               Cow position:
               chr17:6318988-6318611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 74
               

               Conread position:
               313-487
               

               Cow position:
               chr17:11921412-11921230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               31, 116
               

               Conread position:
               313-561
               

               Cow position:
               chr17:14060906-14060656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               31, 178
               

               Conread position:
               313-694
               

               Cow position:
               chr17:9056826-9056445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               64, 11
               

               Conread position:
               314-668
               

               Cow position:
               chr17:10432102-10431736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 133
               

               Conread position:
               319-605
               

               Cow position:
               chr17:33658190-33657907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 17
               

               Conread position:
               319-613
               

               Cow position:
               chr17:6848681-6848966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               222
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               29, 105
               

               Conread position:
               319-620
               

               Cow position:
               chr17:7136858-7137162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               23, 108
               

               Conread position:
               319-696
               

               Cow position:
               chr17:7803295-7802918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               267
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               57, 53
               

               Conread position:
               320-695
               

               Cow position:
               chr17:22127806-22128179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               14, 25
               

               Conread position:
               322-665
               

               Cow position:
               chr17:45296313-45296631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               321, 23
               

               Conread position:
               322-694
               

               Cow position:
               chr17:20884402-20884782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 125
               

               Conread position:
               323-445
               

               Cow position:
               chr17:43633992-43634112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               323-483
               

               Cow position:
               chr17:17267009-17266851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               47, 21
               

               Conread position:
               324-647
               

               Cow position:
               chr17:3371520-3371824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               9, 16
               

               Conread position:
               324-697
               

               Cow position:
               chr17:32348955-32349319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 47
               

               Conread position:
               325-676
               

               Cow position:
               chr17:31856545-31856908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 133
               

               Conread position:
               326-591
               

               Cow position:
               chr17:1040629-1040892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 125
               

               Conread position:
               326-602
               

               Cow position:
               chr17:39857276-39857544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               209
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               18, 98
               

               Conread position:
               326-679
               

               Cow position:
               chr17:8598216-8597870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               16, 36
               

               Conread position:
               327-543
               

               Cow position:
               chr17:7654568-7654352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               115, 41
               

               Conread position:
               327-641
               

               Cow position:
               chr17:37699472-37699145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               17, 128
               

               Conread position:
               327-697
               

               Cow position:
               chr17:25616145-25616502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 77
               

               Conread position:
               328-579
               

               Cow position:
               chr17:23563904-23563659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               194
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               12, 25
               

               Conread position:
               328-600
               

               Cow position:
               chr17:25501995-25502267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 117
               

               Conread position:
               329-463
               

               Cow position:
               chr17:12768894-12768758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               10, 122
               

               Conread position:
               329-577
               

               Cow position:
               chr17:23798168-23798414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               9, 22
               

               Conread position:
               331-611
               

               Cow position:
               chr17:38989993-38990274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               13, 31
               

               Conread position:
               332-687
               

               Cow position:
               chr17:25514231-25513871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 109
               

               Conread position:
               332-695
               

               Cow position:
               chr17:7590567-7590206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               244
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               69, 53
               

               Conread position:
               340-622
               

               Cow position:
               chr17:34751505-34751226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               125, 108
               

               Conread position:
               340-676
               

               Cow position:
               chr17:11912597-11912269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 51
               

               Conread position:
               341-520
               

               Cow position:
               chr17:32009536-32009362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               156, 10
               

               Conread position:
               341-597
               

               Cow position:
               chr17:10561531-10561788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               89, 84
               

               Conread position:
               341-636
               

               Cow position:
               chr17:35339014-35338724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 97
               

               Conread position:
               341-654
               

               Cow position:
               chr17:40851884-40852176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 73
               

               Conread position:
               341-664
               

               Cow position:
               chr17:11215328-11215009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 49
               

               Conread position:
               341-681
               

               Cow position:
               chr17:21325234-21325585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 86
               

               Conread position:
               341-684
               

               Cow position:
               chr17:35573664-35573991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 63
               

               Conread position:
               341-693
               

               Cow position:
               chr17:3353782-3354124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               252
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               30, 108
               

               Conread position:
               341-697
               

               Cow position:
               chr17:40250327-40250666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               118, 31
               

               Conread position:
               342-680
               

               Cow position:
               chr17:20335564-20335886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               25, 11
               

               Conread position:
               344-696
               

               Cow position:
               chr17:36864535-36864882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               114, 81
               

               Conread position:
               344-697
               

               Cow position:
               chr17:21743842-21744193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               128, 95
               

               Conread position:
               345-618
               

               Cow position:
               chr17:27203139-27202873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               202
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               25, 103
               

               Conread position:
               345-624
               

               Cow position:
               chr17:23517037-23516762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 96
               

               Conread position:
               347-621
               

               Cow position:
               chr17:12880504-12880772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               114, 48
               

               Conread position:
               348-686
               

               Cow position:
               chr17:21489716-21489388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 95
               

               Conread position:
               349-618
               

               Cow position:
               chr17:21922713-21922458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               194
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               17, 43
               

               Conread position:
               349-668
               

               Cow position:
               chr17:5350217-5349895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               33, 26
               

               Conread position:
               352-697
               

               Cow position:
               chr17:25342828-25342484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 89
               

               Conread position:
               354-493
               

               Cow position:
               chr17:20857933-20857794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               102, 90
               

               Conread position:
               354-599
               

               Cow position:
               chr17:21758224-21757985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 91
               

               Conread position:
               355-618
               

               Cow position:
               chr17:5850431-5850173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               92, 101
               

               Conread position:
               357-614
               

               Cow position:
               chr17:23883339-23883097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               138, 63
               

               Conread position:
               358-583
               

               Cow position:
               chr17:11368932-11368710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               139, 31
               

               Conread position:
               358-606
               

               Cow position:
               chr17:38263568-38263326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               101, 10
               

               Conread position:
               361-686
               

               Cow position:
               chr17:9824590-9824914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 94
               

               Conread position:
               362-664
               

               Cow position:
               chr17:40406366-40406667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               69, 64
               

               Conread position:
               362-677
               

               Cow position:
               chr17:1466507-1466179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               232
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               133, 86
               

               Conread position:
               362-696
               

               Cow position:
               chr17:1469299-1469623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               133, 30
               

               Conread position:
               363-610
               

               Cow position:
               chr17:39715082-39715323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               132, 15
               

               Conread position:
               363-611
               

               Cow position:
               chr17:2275398-2275638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               70, 82
               

               Conread position:
               363-684
               

               Cow position:
               chr17:29025991-29026319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               68, 95
               

               Conread position:
               363-697
               

               Cow position:
               chr17:22057099-22056757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               132, 55
               

               Conread position:
               364-597
               

               Cow position:
               chr17:20810567-20810336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               21, 35
               

               Conread position:
               366-676
               

               Cow position:
               chr17:12511049-12510749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               17, 78
               

               Conread position:
               367-560
               

               Cow position:
               chr17:21478995-21478805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               89, 99
               

               Conread position:
               368-695
               

               Cow position:
               chr17:11995103-11994765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               231
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               65, 57
               

               Conread position:
               369-684
               

               Cow position:
               chr17:3153642-3153324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 58
               

               Conread position:
               369-696
               

               Cow position:
               chr17:21806520-21806194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               131, 29
               

               Conread position:
               371-684
               

               Cow position:
               chr17:40638881-40639191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 75
               

               Conread position:
               375-684
               

               Cow position:
               chr17:1025885-1025590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 69
               

               Conread position:
               375-696
               

               Cow position:
               chr17:36814295-36814619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               120, 50
               

               Conread position:
               375-697
               

               Cow position:
               chr17:7571037-7571361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               375-697
               

               Cow position:
               chr17:24750852-24751169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 73
               

               Conread position:
               375-697
               

               Cow position:
               chr17:34791131-34790809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 66
               

               Conread position:
               380-522
               

               Cow position:
               chr17:20269671-20269816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               117, 70
               

               Conread position:
               381-674
               

               Cow position:
               chr17:5372588-5372298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 82
               

               Conread position:
               383-606
               

               Cow position:
               chr17:16158434-16158652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               111, 71
               

               Conread position:
               383-684
               

               Cow position:
               chr17:9770454-9770751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               69, 61
               

               Conread position:
               387-697
               

               Cow position:
               chr17:37816243-37815929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               228
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               108, 38
               

               Conread position:
               388-683
               

               Cow position:
               chr17:18934205-18934499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 61
               

               Conread position:
               388-696
               

               Cow position:
               chr17:21039512-21039812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 22
               

               Conread position:
               392-641
               

               Cow position:
               chr17:22017135-22016890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 139
               

               Conread position:
               392-680
               

               Cow position:
               chr17:25126304-25126584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               39, 33
               

               Conread position:
               392-684
               

               Cow position:
               chr17:9940634-9940937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               16, 67
               

               Conread position:
               392-684
               

               Cow position:
               chr17:22051640-22051346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 90
               

               Conread position:
               392-692
               

               Cow position:
               chr17:5011801-5012094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               251, 56
               

               Conread position:
               393-695
               

               Cow position:
               chr17:39606383-39606678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 30
               

               Conread position:
               395-686
               

               Cow position:
               chr17:33155200-33154912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               215
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               248, 54
               

               Conread position:
               396-684
               

               Cow position:
               chr17:35051563-35051864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               230
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               101, 48
               

               Conread position:
               397-685
               

               Cow position:
               chr17:25800925-25800637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 52
               

               Conread position:
               398-668
               

               Cow position:
               chr17:26789378-26789643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               51, 88
               

               Conread position:
               398-676
               

               Cow position:
               chr17:26448501-26448779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               29, 51
               

               Conread position:
               401-695
               

               Cow position:
               chr17:28982140-28982433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               210
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               42, 60
               

               Conread position:
               402-694
               

               Cow position:
               chr17:18818530-18818814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               93, 46
               

               Conread position:
               402-697
               

               Cow position:
               chr17:17044371-17044078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 42
               

               Conread position:
               406-604
               

               Cow position:
               chr17:28814533-28814333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               53, 132
               

               Conread position:
               407-684
               

               Cow position:
               chr17:40355220-40355505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               26, 11
               

               Conread position:
               407-694
               

               Cow position:
               chr17:32333125-32332837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 40
               

               Conread position:
               407-697
               

               Cow position:
               chr17:35149561-35149270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               175, 41
               

               Conread position:
               408-684
               

               Cow position:
               chr17:40412554-40412823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               89, 33
               

               Conread position:
               412-697
               

               Cow position:
               chr17:8815162-8815444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               205
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               70, 32
               

               Conread position:
               414-683
               

               Cow position:
               chr17:29995464-29995193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               204
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               84, 42
               

               Conread position:
               414-685
               

               Cow position:
               chr17:25511216-25511488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               214
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               56, 27
               

               Conread position:
               415-579
               

               Cow position:
               chr17:7577565-7577733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               32, 124
               

               Conread position:
               415-681
               

               Cow position:
               chr17:41429616-41429350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               82, 12
               

               Conread position:
               415-684
               

               Cow position:
               chr17:25473304-25473037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 5
               

               Conread position:
               416-611
               

               Cow position:
               chr17:12959081-12959274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               156
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               81, 28
               

               Conread position:
               416-683
               

               Cow position:
               chr17:8948990-8948723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               205
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               107, 38
               

               Conread position:
               416-683
               

               Cow position:
               chr17:26575255-26574978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               50, 32
               

               Conread position:
               416-697
               

               Cow position:
               chr17:18767017-18766734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 31
               

               Conread position:
               418-615
               

               Cow position:
               chr17:18848183-18847990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               29, 42
               

               Conread position:
               418-684
               

               Cow position:
               chr17:33164839-33164576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               226, 30
               

               Conread position:
               420-639
               

               Cow position:
               chr17:22048811-22048592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               54, 28
               

               Conread position:
               423-601
               

               Cow position:
               chr17:11478748-11478928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               43, 113
               

               Conread position:
               423-669
               

               Cow position:
               chr17:24163020-24163263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 86
               

               Conread position:
               423-694
               

               Cow position:
               chr17:9932319-9932059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               74, 36
               

               Conread position:
               427-684
               

               Cow position:
               chr17:40276724-40276980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 22
               

               Conread position:
               428-603
               

               Cow position:
               chr17:30212873-30213046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               24, 96
               

               Conread position:
               428-683
               

               Cow position:
               chr17:37341053-37340788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               39, 28
               

               Conread position:
               430-606
               

               Cow position:
               chr17:34836160-34836334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               67, 14
               

               Conread position:
               430-641
               

               Cow position:
               chr17:8823299-8823518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               65, 107
               

               Conread position:
               432-696
               

               Cow position:
               chr17:25584231-25584503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               17, 25
               

               Conread position:
               435-680
               

               Cow position:
               chr17:43315294-43315050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               208, 63
               

               Conread position:
               436-695
               

               Cow position:
               chr17:21472185-21471932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               61, 14
               

               Conread position:
               438-697
               

               Cow position:
               chr17:9509999-9509734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               36, 14
               

               Conread position:
               444-694
               

               Cow position:
               chr17:21466263-21466003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               22, 92
               

               Conread position:
               449-618
               

               Cow position:
               chr17:3097651-3097479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               16, 34
               

               Conread position:
               449-678
               

               Cow position:
               chr17:43957667-43957899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               46, 10
               

               Conread position:
               449-684
               

               Cow position:
               chr17:22223705-22223958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               48, 168
               

               Conread position:
               450-618
               

               Cow position:
               chr17:21788652-21788485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               45, 85
               

               Conread position:
               450-666
               

               Cow position:
               chr17:24862465-24862681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               45, 85
               

               Conread position:
               453-618
               

               Cow position:
               chr17:11224110-11224274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               20, 70
               

               Conread position:
               454-619
               

               Cow position:
               chr17:12342470-12342306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               41, 82
               
UCSC Genome Browser
               Conread position:
               454-674
               

               Cow position:
               chr17:27303953-27303746 (view  custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               41, 6
               
UCSC Genome Browser
               
               
               
Conread position: 455-563

               
               
               
Cow position: chr17:32192842-32192733 (view  custom track)

               
               
               
Alignm length: 111

               
               
               
Alignm identity: 91

               
               
               
Alignm E-value: 1e-21

               
               
               
Alignm gaps (pig, cow): 11, 79
UCSC Genome Browser
               
               
               
Conread position: 455-678

               
               
               
Cow position: chr17:32143101-32143327 (view  custom track)

               
               
               
Alignm length: 230

               
               
               
Alignm identity: 157

               
               
               
Alignm E-value: 4e-24

               
               
               
Alignm gaps (pig, cow): 187, 12

               
               
               Conread position:455-695
               
               
               Cow position:chr17:26072749-26072500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):40, 80

               
               
               Conread position:456-618
               
               
               Cow position:chr17:11306222-11306383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 80

               
               
               Conread position:456-649
               
               
               Cow position:chr17:27440189-27440377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 61

               
               
               Conread position:456-680
               
               
               Cow position:chr17:5837947-5837732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:456-697
               
               
               Cow position:chr17:17034962-17035203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 80

               
               
               Conread position:457-684
               
               
               Cow position:chr17:1463316-1463082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:458-618
               
               
               Cow position:chr17:29076068-29075908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:458-686
               
               
               Cow position:chr17:31990948-31991178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 77

               
               
               Conread position:458-694
               
               
               Cow position:chr17:4817542-4817782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:458-694
               
               
               Cow position:chr17:42150406-42150641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:458-697
               
               
               Cow position:chr17:25467001-25467246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:459-641
               
               
               Cow position:chr17:37129215-37129408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:459-676
               
               
               Cow position:chr17:946373-946592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:461-694
               
               
               Cow position:chr17:7959198-7959432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:465-636
               
               
               Cow position:chr17:13236318-13236146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 68

               
               
               Conread position:467-605
               
               
               Cow position:chr17:8108330-8108196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:467-606
               
               
               Cow position:chr17:20392175-20392311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:467-618
               
               
               Cow position:chr17:5719895-5720048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:467-620
               
               
               Cow position:chr17:37430481-37430328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:468-692
               
               
               Cow position:chr17:12963581-12963363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:471-612
               
               
               Cow position:chr17:42697322-42697464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):26, 64

               
               
               Conread position:471-694
               
               
               Cow position:chr17:13414340-13414109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 64

               
               
               Conread position:473-618
               
               
               Cow position:chr17:5743261-5743116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 64

               
               
               Conread position:473-618
               
               
               Cow position:chr17:9713312-9713167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):24, 62

               
               
               Conread position:473-684
               
               
               Cow position:chr17:27292427-27292210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:473-697
               
               
               Cow position:chr17:20929271-20929501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:474-687
               
               
               Cow position:chr17:33653659-33653447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:475-609
               
               
               Cow position:chr17:42744488-42744625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 60

               
               
               Conread position:475-680
               
               
               Cow position:chr17:10508402-10508194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):20, 60

               
               
               Conread position:475-697
               
               
               Cow position:chr17:30501783-30501557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):22, 64

               
               
               Conread position:476-588
               
               
               Cow position:chr17:39485795-39485907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:477-670
               
               
               Cow position:chr17:10414532-10414723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:480-618
               
               
               Cow position:chr17:35542133-35541995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:480-697
               
               
               Cow position:chr17:25139300-25139532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:481-618
               
               
               Cow position:chr17:21268335-21268473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:481-695
               
               
               Cow position:chr17:21718959-21718742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:483-612
               
               
               Cow position:chr17:18109509-18109379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 53

               
               
               Conread position:484-696
               
               
               Cow position:chr17:24895114-24895332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:486-611
               
               
               Cow position:chr17:968927-969051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:487-641
               
               
               Cow position:chr17:3178416-3178262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:487-684
               
               
               Cow position:chr17:44234294-44234490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:491-617
               
               
               Cow position:chr17:21298492-21298617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:492-687
               
               
               Cow position:chr17:11056110-11055919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):147, 42

               
               
               Conread position:492-697
               
               
               Cow position:chr17:36468142-36467930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):13, 43

               
               
               Conread position:493-618
               
               
               Cow position:chr17:21335513-21335388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:493-640
               
               
               Cow position:chr17:24789872-24790022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:493-647
               
               
               Cow position:chr17:25348419-25348569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):150, 41

               
               
               Conread position:493-679
               
               
               Cow position:chr17:9078170-9077974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):108, 41

               
               
               Conread position:493-680
               
               
               Cow position:chr17:21676941-21677131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):150, 41

               
               
               Conread position:493-683
               
               
               Cow position:chr17:15728524-15728712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:493-684
               
               
               Cow position:chr17:12215207-12215009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:493-688
               
               
               Cow position:chr17:5027409-5027216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):150, 40

               
               
               Conread position:493-696
               
               
               Cow position:chr17:10016330-10016532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):150, 39

               
               
               Conread position:494-668
               
               
               Cow position:chr17:24767236-24767060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):155, 40

               
               
               Conread position:494-695
               
               
               Cow position:chr17:8663556-8663761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):115, 40

               
               
               Conread position:496-681
               
               
               Cow position:chr17:12887413-12887593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):147, 39

               
               
               Conread position:496-684
               
               
               Cow position:chr17:3387771-3387965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):146, 38

               
               
               Conread position:496-684
               
               
               Cow position:chr17:11921111-11920918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):146, 38

               
               
               Conread position:496-684
               
               
               Cow position:chr17:20306380-20306577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):106, 35

               
               
               Conread position:496-685
               
               
               Cow position:chr17:25491007-25490797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 38

               
               
               Conread position:496-687
               
               
               Cow position:chr17:19898944-19899146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):38, 198

               
               
               Conread position:496-693
               
               
               Cow position:chr17:19471717-19471522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):146, 40

               
               
               Conread position:496-694
               
               
               Cow position:chr17:26225081-26225282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):147, 39

               
               
               Conread position:496-695
               
               
               Cow position:chr17:15883725-15883927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:496-695
               
               
               Cow position:chr17:35043870-35043680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):137, 33

               
               
               Conread position:496-696
               
               
               Cow position:chr17:11985824-11985631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:496-697
               
               
               Cow position:chr17:5344671-5344876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):105, 38

               
               
               Conread position:496-697
               
               
               Cow position:chr17:6786990-6787197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):27, 32

               
               
               Conread position:496-697
               
               
               Cow position:chr17:22081462-22081268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):147, 36

               
               
               Conread position:497-608
               
               
               Cow position:chr17:25144161-25144046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):25, 42

               
               
               Conread position:497-684
               
               
               Cow position:chr17:20836146-20836334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):146, 30

               
               
               Conread position:498-676
               
               
               Cow position:chr17:7711493-7711672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):137, 36

               
               
               Conread position:498-696
               
               
               Cow position:chr17:3320204-3320395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):145, 36

               
               
               Conread position:498-697
               
               
               Cow position:chr17:2729856-2729660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):143, 11

               
               
               Conread position:499-613
               
               
               Cow position:chr17:22139637-22139750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:499-673
               
               
               Cow position:chr17:21777783-21777961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):141, 35

               
               
               Conread position:499-680
               
               
               Cow position:chr17:25122187-25122008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):159, 35

               
               
               Conread position:499-680
               
               
               Cow position:chr17:28795926-28795740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):143, 35

               
               
               Conread position:499-682
               
               
               Cow position:chr17:30513948-30513769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):144, 23

               
               
               Conread position:499-684
               
               
               Cow position:chr17:35457759-35457574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:500-680
               
               
               Cow position:chr17:1081262-1081448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:500-684
               
               
               Cow position:chr17:10825538-10825720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):139, 35

               
               
               Conread position:500-684
               
               
               Cow position:chr17:21181509-21181700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:500-684
               
               
               Cow position:chr17:43323487-43323298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):139, 34

               
               
               Conread position:500-686
               
               
               Cow position:chr17:21206445-21206264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:500-696
               
               
               Cow position:chr17:13976653-13976454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):115, 34

               
               
               Conread position:501-696
               
               
               Cow position:chr17:20913169-20913364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):143, 33

               
               
               Conread position:502-617
               
               
               Cow position:chr17:12006220-12006334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:502-674
               
               
               Cow position:chr17:18776127-18775955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:502-680
               
               
               Cow position:chr17:27647066-27646885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:502-681
               
               
               Cow position:chr17:10222150-10221966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:502-692
               
               
               Cow position:chr17:20881749-20881566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):141, 32

               
               
               Conread position:502-695
               
               
               Cow position:chr17:5693595-5693401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):141, 32

               
               
               Conread position:504-692
               
               
               Cow position:chr17:26183406-26183598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:505-697
               
               
               Cow position:chr17:31563625-31563426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:509-641
               
               
               Cow position:chr17:20270018-20270150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:509-689
               
               
               Cow position:chr17:21363448-21363635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):98, 25

               
               
               Conread position:509-697
               
               
               Cow position:chr17:21236589-21236783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):134, 25

               
               
               Conread position:509-697
               
               
               Cow position:chr17:31985876-31985692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):16, 104

               
               
               Conread position:510-680
               
               
               Cow position:chr17:12200861-12201032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:511-678
               
               
               Cow position:chr17:30737512-30737688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:512-641
               
               
               Cow position:chr17:24757597-24757718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:512-677
               
               
               Cow position:chr17:19544162-19543995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):26, 22

               
               
               Conread position:512-697
               
               
               Cow position:chr17:18641514-18641692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):131, 23

               
               
               Conread position:513-667
               
               
               Cow position:chr17:28528924-28529082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:513-687
               
               
               Cow position:chr17:25702672-25702850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:514-682
               
               
               Cow position:chr17:1282186-1282025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:514-684
               
               
               Cow position:chr17:6767189-6767013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):129, 21

               
               
               Conread position:514-695
               
               
               Cow position:chr17:27922645-27922469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:514-695
               
               
               Cow position:chr17:30977092-30977270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):124, 20

               
               
               Conread position:514-697
               
               
               Cow position:chr17:24898272-24898462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:515-618
               
               
               Cow position:chr17:10510399-10510297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:515-641
               
               
               Cow position:chr17:38483724-38483601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:515-680
               
               
               Cow position:chr17:15103667-15103502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):128, 20

               
               
               Conread position:515-693
               
               
               Cow position:chr17:24030159-24029987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:515-696
               
               
               Cow position:chr17:5048003-5048186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):126, 16

               
               
               Conread position:515-696
               
               
               Cow position:chr17:9260539-9260355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:519-697
               
               
               Cow position:chr17:17782132-17782309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):124, 15

               
               
               Conread position:520-648
               
               
               Cow position:chr17:18404492-18404370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:526-697
               
               
               Cow position:chr17:27606601-27606770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):115, 8

               
               
               Conread position:532-679
               
               
               Cow position:chr17:3541798-3541947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):109, 77

               
               
               Conread position:532-680
               
               
               Cow position:chr17:7864913-7865065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):110, 84

               
               
               Conread position:533-641
               
               
               Cow position:chr17:34806577-34806468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:533-692
               
               
               Cow position:chr17:25352287-25352458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:533-693
               
               
               Cow position:chr17:22241094-22241260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 50

               
               
               Conread position:535-679
               
               
               Cow position:chr17:32008459-32008314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 30

               
               
               Conread position:535-680
               
               
               Cow position:chr17:4680116-4679968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):104, 5

               
               
               Conread position:537-685
               
               
               Cow position:chr17:18673946-18673790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:538-684
               
               
               Cow position:chr17:8809410-8809264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 61

               
               
               Conread position:540-684
               
               
               Cow position:chr17:24612747-24612889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):104, 61

               
               
               Conread position:540-697
               
               
               Cow position:chr17:24116706-24116870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 150

               
               
               Conread position:542-692
               
               
               Cow position:chr17:20930403-20930554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 9

               
               
               Conread position:548-684
               
               
               Cow position:chr17:24334552-24334692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:548-695
               
               
               Cow position:chr17:35140760-35140599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 0
Show alignments to all cow chromosomes.
Conread position:	10-548
Cow position:	chr17:33999466-33998941 (view UCSC Genome Browser custom track)
Alignm length:	552
Alignm identity:	367
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	70, 137
Conread position:	39-667
Cow position:	chr17:5423481-5422851 (view UCSC Genome Browser custom track)
Alignm length:	644
Alignm identity:	465
Alignm E-value:	0
Alignm gaps (pig, cow):	64, 218
Conread position:	47-680
Cow position:	chr17:1563176-1562551 (view UCSC Genome Browser custom track)
Alignm length:	653
Alignm identity:	459
Alignm E-value:	0
Alignm gaps (pig, cow):	163, 193
Conread position:	52-684
Cow position:	chr17:908350-908984 (view UCSC Genome Browser custom track)
Alignm length:	655
Alignm identity:	486
Alignm E-value:	0
Alignm gaps (pig, cow):	74, 20
Conread position:	85-421
Cow position:	chr17:32554373-32554043 (view UCSC Genome Browser custom track)
Alignm length:	342
Alignm identity:	226
Alignm E-value:	0
Alignm gaps (pig, cow):	18, 126
Conread position:	98-446
Cow position:	chr17:13672419-13672064 (view UCSC Genome Browser custom track)
Alignm length:	360
Alignm identity:	232
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	31, 141
Conread position:	128-636
Cow position:	chr17:9746214-9746706 (view UCSC Genome Browser custom track)
Alignm length:	512
Alignm identity:	386
Alignm E-value:	0
Alignm gaps (pig, cow):	366, 66
Conread position:	135-588
Cow position:	chr17:11172923-11172471 (view UCSC Genome Browser custom track)
Alignm length:	463
Alignm identity:	330
Alignm E-value:	0
Alignm gaps (pig, cow):	59, 11
Conread position:	141-667
Cow position:	chr17:9698000-9697456 (view UCSC Genome Browser custom track)
Alignm length:	548
Alignm identity:	387
Alignm E-value:	0
Alignm gaps (pig, cow):	18, 137
Conread position:	154-685
Cow position:	chr17:7811020-7810502 (view UCSC Genome Browser custom track)
Alignm length:	548
Alignm identity:	416
Alignm E-value:	0
Alignm gaps (pig, cow):	158, 55
Conread position:	155-520
Cow position:	chr17:6623978-6624334 (view UCSC Genome Browser custom track)
Alignm length:	368
Alignm identity:	277
Alignm E-value:	0
Alignm gaps (pig, cow):	211, 54
Conread position:	159-692
Cow position:	chr17:6423482-6424006 (view UCSC Genome Browser custom track)
Alignm length:	539
Alignm identity:	391
Alignm E-value:	0
Alignm gaps (pig, cow):	184, 16
Conread position:	163-676
Cow position:	chr17:40741369-40741890 (view UCSC Genome Browser custom track)
Alignm length:	531
Alignm identity:	378
Alignm E-value:	0
Alignm gaps (pig, cow):	8, 183
Conread position:	176-435
Cow position:	chr17:36817679-36817937 (view UCSC Genome Browser custom track)
Alignm length:	261
Alignm identity:	179
Alignm E-value:	4e-34
Alignm gaps (pig, cow):	220, 140
Conread position:	176-685
Cow position:	chr17:24787286-24786780 (view UCSC Genome Browser custom track)
Alignm length:	525
Alignm identity:	392
Alignm E-value:	0
Alignm gaps (pig, cow):	34, 196
Conread position:	178-684
Cow position:	chr17:11832392-11831874 (view UCSC Genome Browser custom track)
Alignm length:	534
Alignm identity:	391
Alignm E-value:	0
Alignm gaps (pig, cow):	7, 32
Conread position:	185-514
Cow position:	chr17:9777997-9778315 (view UCSC Genome Browser custom track)
Alignm length:	334
Alignm identity:	247
Alignm E-value:	0
Alignm gaps (pig, cow):	185, 130
Conread position:	185-684
Cow position:	chr17:15333963-15333440 (view UCSC Genome Browser custom track)
Alignm length:	531
Alignm identity:	388
Alignm E-value:	0
Alignm gaps (pig, cow):	260, 25
Conread position:	185-696
Cow position:	chr17:36790893-36791380 (view UCSC Genome Browser custom track)
Alignm length:	518
Alignm identity:	379
Alignm E-value:	0
Alignm gaps (pig, cow):	7, 63
Conread position:	186-696
Cow position:	chr17:24587365-24587880 (view UCSC Genome Browser custom track)
Alignm length:	522
Alignm identity:	408
Alignm E-value:	0
Alignm gaps (pig, cow):	158, 256