• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Pig3-SRG8015N22
        

               
Conread position:
               
9-626
               

               
Cow position:
               
chr28:20963980-20963382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 84
               

               
Conread position:
               
149-446
               

               
Cow position:
               
chr28:28076731-28076439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
39, 80
               

               
Conread position:
               
157-614
               

               
Cow position:
               
chr28:8408426-8408871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
163-610
               

               
Cow position:
               
chr28:10172723-10172286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 46
               

               
Conread position:
               
176-685
               

               
Cow position:
               
chr28:26719062-26719539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 94
               

               
Conread position:
               
180-446
               

               
Cow position:
               
chr28:21873481-21873741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
218, 5
               

               
Conread position:
               
182-588
               

               
Cow position:
               
chr28:2862573-2862977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 39
               

               
Conread position:
               
185-618
               

               
Cow position:
               
chr28:4841684-4841251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 43
               

               
Conread position:
               
186-445
               

               
Cow position:
               
chr28:28414382-28414643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 61
               

               
Conread position:
               
187-617
               

               
Cow position:
               
chr28:12619276-12619713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 28
               

               
Conread position:
               
189-680
               

               
Cow position:
               
chr28:23459853-23460348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 253
               

               
Conread position:
               
194-438
               

               
Cow position:
               
chr28:12048977-12048741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
150, 20
               

               
Conread position:
               
194-683
               

               
Cow position:
               
chr28:9740191-9740665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 102
               

               
Conread position:
               
195-620
               

               
Cow position:
               
chr28:19080124-19079704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 19
               

               
Conread position:
               
195-684
               

               
Cow position:
               
chr28:20409124-20409599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 91
               

               
Conread position:
               
196-614
               

               
Cow position:
               
chr28:19026283-19025870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 109
               

               
Conread position:
               
201-683
               

               
Cow position:
               
chr28:16370346-16369882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 19
               

               
Conread position:
               
205-680
               

               
Cow position:
               
chr28:5236870-5236391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 53
               

               
Conread position:
               
206-696
               

               
Cow position:
               
chr28:3493052-3492567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 41
               

               
Conread position:
               
207-487
               

               
Cow position:
               
chr28:23480529-23480250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
52, 47
               

               
Conread position:
               
208-469
               

               
Cow position:
               
chr28:23775779-23776038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 179
               

               
Conread position:
               
208-696
               

               
Cow position:
               
chr28:21868186-21868677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 38
               

               
Conread position:
               
210-442
               

               
Cow position:
               
chr28:16244023-16243792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 96
               

               
Conread position:
               
210-489
               

               
Cow position:
               
chr28:7547612-7547317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
22, 255
               

               
Conread position:
               
211-589
               

               
Cow position:
               
chr28:23621285-23621644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 36
               

               
Conread position:
               
211-604
               

               
Cow position:
               
chr28:24343105-24343491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
211-615
               

               
Cow position:
               
chr28:6971602-6971210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 36
               

               
Conread position:
               
212-461
               

               
Cow position:
               
chr28:32300622-32300375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
130, 100
               

               
Conread position:
               
212-615
               

               
Cow position:
               
chr28:16085063-16085460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 16
               

               
Conread position:
               
212-695
               

               
Cow position:
               
chr28:2819496-2819984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 196
               

               
Conread position:
               
214-412
               

               
Cow position:
               
chr28:21129383-21129189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
214-413
               

               
Cow position:
               
chr28:22304594-22304786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
214-423
               

               
Cow position:
               
chr28:13371428-13371225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
160, 47
               

               
Conread position:
               
214-432
               

               
Cow position:
               
chr28:5335520-5335298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
214-432
               

               
Cow position:
               
chr28:9276884-9277105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
214-432
               

               
Cow position:
               
chr28:23686033-23686255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
214-432
               

               
Cow position:
               
chr28:28471995-28472217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
214-434
               

               
Cow position:
               
chr28:17738339-17738115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
214-441
               

               
Cow position:
               
chr28:13356845-13356610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
214-445
               

               
Cow position:
               
chr28:11451727-11451494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 109
               

               
Conread position:
               
214-465
               

               
Cow position:
               
chr28:12457896-12458148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
136, 214
               

               
Conread position:
               
214-466
               

               
Cow position:
               
chr28:16215151-16214916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
214-472
               

               
Cow position:
               
chr28:6775893-6775637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
214-479
               

               
Cow position:
               
chr28:27428492-27428747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
214-483
               

               
Cow position:
               
chr28:5805265-5805514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
116, 39
               

               
Conread position:
               
214-484
               

               
Cow position:
               
chr28:9390625-9390358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 157
               

               
Conread position:
               
214-487
               

               
Cow position:
               
chr28:4880524-4880256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
121, 131
               

               
Conread position:
               
214-487
               

               
Cow position:
               
chr28:23839949-23840212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
215, 33
               

               
Conread position:
               
214-506
               

               
Cow position:
               
chr28:26269069-26269359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
31, 132
               

               
Conread position:
               
214-519
               

               
Cow position:
               
chr28:20966667-20966361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
214-541
               

               
Cow position:
               
chr28:7751561-7751239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 179
               

               
Conread position:
               
214-542
               

               
Cow position:
               
chr28:4587836-4588160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
214-550
               

               
Cow position:
               
chr28:8382073-8382409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
214-553
               

               
Cow position:
               
chr28:10744949-10745288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 127
               

               
Conread position:
               
214-556
               

               
Cow position:
               
chr28:10534189-10533858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 33
               

               
Conread position:
               
214-563
               

               
Cow position:
               
chr28:21672537-21672877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
214-572
               

               
Cow position:
               
chr28:4536210-4536552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 107
               

               
Conread position:
               
214-582
               

               
Cow position:
               
chr28:13693489-13693852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
38, 79
               

               
Conread position:
               
214-588
               

               
Cow position:
               
chr28:21380621-21380988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 26
               

               
Conread position:
               
214-591
               

               
Cow position:
               
chr28:18591010-18591382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
214-591
               

               
Cow position:
               
chr28:26614635-26614985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 38
               

               
Conread position:
               
214-592
               

               
Cow position:
               
chr28:7228643-7228277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
214-596
               

               
Cow position:
               
chr28:21598513-21598133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 33
               

               
Conread position:
               
214-597
               

               
Cow position:
               
chr28:7865068-7865447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
214-599
               

               
Cow position:
               
chr28:14933702-14934078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
214-610
               

               
Cow position:
               
chr28:4188266-4188684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 107
               

               
Conread position:
               
214-625
               

               
Cow position:
               
chr28:12946684-12947095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
109, 33
               

               
Conread position:
               
214-629
               

               
Cow position:
               
chr28:19222405-19222002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 37
               

               
Conread position:
               
214-641
               

               
Cow position:
               
chr28:7512852-7512422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 214
               

               
Conread position:
               
214-641
               

               
Cow position:
               
chr28:16211357-16210942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 191
               

               
Conread position:
               
214-647
               

               
Cow position:
               
chr28:7549322-7548889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
214-648
               

               
Cow position:
               
chr28:3408477-3408055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 36
               

               
Conread position:
               
214-664
               

               
Cow position:
               
chr28:12430349-12430795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
214-667
               

               
Cow position:
               
chr28:26743362-26743822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 33
               

               
Conread position:
               
214-668
               

               
Cow position:
               
chr28:3914450-3914897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
214-668
               

               
Cow position:
               
chr28:21363498-21363932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 62
               

               
Conread position:
               
214-675
               

               
Cow position:
               
chr28:7268196-7267750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 67
               

               
Conread position:
               
214-677
               

               
Cow position:
               
chr28:15601004-15601475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 33
               

               
Conread position:
               
214-680
               

               
Cow position:
               
chr28:18790751-18791238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 47
               

               
Conread position:
               
214-681
               

               
Cow position:
               
chr28:10589289-10588828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 72
               

               
Conread position:
               
214-681
               

               
Cow position:
               
chr28:30293850-30293381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 130
               

               
Conread position:
               
214-684
               

               
Cow position:
               
chr28:661861-662308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 43
               

               
Conread position:
               
214-684
               

               
Cow position:
               
chr28:8787290-8787747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 43
               

               
Conread position:
               
214-685
               

               
Cow position:
               
chr28:3144150-3143676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
214-685
               

               
Cow position:
               
chr28:14997804-14998270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
214-685
               

               
Cow position:
               
chr28:25727121-25727577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
214-689
               

               
Cow position:
               
chr28:3740592-3741082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 116
               

               
Conread position:
               
214-690
               

               
Cow position:
               
chr28:5684444-5684914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 215
               

               
Conread position:
               
214-692
               

               
Cow position:
               
chr28:4282752-4282272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 173
               

               
Conread position:
               
214-694
               

               
Cow position:
               
chr28:10669314-10669803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 66
               

               
Conread position:
               
214-695
               

               
Cow position:
               
chr28:2961082-2960597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 33
               

               
Conread position:
               
214-695
               

               
Cow position:
               
chr28:9426602-9426129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 84
               

               
Conread position:
               
214-695
               

               
Cow position:
               
chr28:11426805-11426329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
214-695
               

               
Cow position:
               
chr28:11527516-11527045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 88
               

               
Conread position:
               
214-695
               

               
Cow position:
               
chr28:14150974-14151448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
128, 110
               

               
Conread position:
               
214-695
               

               
Cow position:
               
chr28:24966128-24966605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 32
               

               
Conread position:
               
214-696
               

               
Cow position:
               
chr28:5817587-5818055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 55
               

               
Conread position:
               
214-696
               

               
Cow position:
               
chr28:23616142-23616625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 230
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr28:7698241-7697757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr28:21104107-21103598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 52
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr28:22332290-22332750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 12
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr28:30303453-30302996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr28:34443024-34442540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
129, 247
               

               
Conread position:
               
215-405
               

               
Cow position:
               
chr28:11827237-11827423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
149, 26
               

               
Conread position:
               
215-432
               

               
Cow position:
               
chr28:33256330-33256551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
215-438
               

               
Cow position:
               
chr28:29455916-29455694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 109
               

               
Conread position:
               
215-445
               

               
Cow position:
               
chr28:24996848-24996619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 58
               

               
Conread position:
               
215-458
               

               
Cow position:
               
chr28:30978023-30978255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
215, 32
               

               
Conread position:
               
215-465
               

               
Cow position:
               
chr28:7606968-7607222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
215-468
               

               
Cow position:
               
chr28:31972006-31971763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
177, 39
               

               
Conread position:
               
215-470
               

               
Cow position:
               
chr28:6051477-6051727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
215-472
               

               
Cow position:
               
chr28:34208450-34208706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
128, 52
               

               
Conread position:
               
215-489
               

               
Cow position:
               
chr28:19222857-19222592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
215-489
               

               
Cow position:
               
chr28:26784726-26784453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 115
               

               
Conread position:
               
215-495
               

               
Cow position:
               
chr28:23231325-23231044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
161, 28
               

               
Conread position:
               
215-506
               

               
Cow position:
               
chr28:15063598-15063313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
215-516
               

               
Cow position:
               
chr28:17287965-17288254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
279, 92
               

               
Conread position:
               
215-519
               

               
Cow position:
               
chr28:16253114-16252815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 32
               

               
Conread position:
               
215-562
               

               
Cow position:
               
chr28:13267521-13267872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 244
               

               
Conread position:
               
215-584
               

               
Cow position:
               
chr28:11786967-11786612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 32
               

               
Conread position:
               
215-602
               

               
Cow position:
               
chr28:26922623-26922245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 32
               

               
Conread position:
               
215-606
               

               
Cow position:
               
chr28:18354580-18354200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
215-617
               

               
Cow position:
               
chr28:20313016-20313417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 66
               

               
Conread position:
               
215-617
               

               
Cow position:
               
chr28:29434684-29434288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 108
               

               
Conread position:
               
215-641
               

               
Cow position:
               
chr28:26533283-26533705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 215
               

               
Conread position:
               
215-671
               

               
Cow position:
               
chr28:1099901-1099482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
443, 109
               

               
Conread position:
               
215-673
               

               
Cow position:
               
chr28:25399631-25400064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 32
               

               
Conread position:
               
215-679
               

               
Cow position:
               
chr28:23007987-23007539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 99
               

               
Conread position:
               
215-681
               

               
Cow position:
               
chr28:16204589-16204125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
215-683
               

               
Cow position:
               
chr28:16919423-16918967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 181
               

               
Conread position:
               
215-684
               

               
Cow position:
               
chr28:15272522-15272060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
12, 109
               

               
Conread position:
               
215-687
               

               
Cow position:
               
chr28:22500741-22500294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
215-693
               

               
Cow position:
               
chr28:12964316-12964799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
215-695
               

               
Cow position:
               
chr28:14657439-14657935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 123
               

               
Conread position:
               
215-696
               

               
Cow position:
               
chr28:34229970-34230448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 211
               

               
Conread position:
               
216-402
               

               
Cow position:
               
chr28:7328644-7328825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 96
               

               
Conread position:
               
216-483
               

               
Cow position:
               
chr28:10879517-10879773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
150, 88
               

               
Conread position:
               
216-484
               

               
Cow position:
               
chr28:17029973-17029712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
216-489
               

               
Cow position:
               
chr28:22170978-22170699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
216-524
               

               
Cow position:
               
chr28:6861695-6862000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
216-530
               

               
Cow position:
               
chr28:18717383-18717078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
216-539
               

               
Cow position:
               
chr28:3256543-3256858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 27
               

               
Conread position:
               
216-546
               

               
Cow position:
               
chr28:12758765-12758433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
128, 29
               

               
Conread position:
               
216-651
               

               
Cow position:
               
chr28:31110263-31109830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 41
               

               
Conread position:
               
216-674
               

               
Cow position:
               
chr28:22323007-22323457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
127, 110
               

               
Conread position:
               
216-684
               

               
Cow position:
               
chr28:11585466-11585001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 107
               

               
Conread position:
               
216-694
               

               
Cow position:
               
chr28:22371934-22371457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
216-695
               

               
Cow position:
               
chr28:616145-616587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
258, 31
               

               
Conread position:
               
216-695
               

               
Cow position:
               
chr28:4308156-4307673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 40
               

               
Conread position:
               
217-506
               

               
Cow position:
               
chr28:6486337-6486623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
125, 9
               

               
Conread position:
               
217-611
               

               
Cow position:
               
chr28:21354965-21355363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 92
               

               
Conread position:
               
217-680
               

               
Cow position:
               
chr28:21844699-21845155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 29
               

               
Conread position:
               
217-681
               

               
Cow position:
               
chr28:10616208-10615745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 30
               

               
Conread position:
               
217-686
               

               
Cow position:
               
chr28:23793558-23793111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 30
               

               
Conread position:
               
217-696
               

               
Cow position:
               
chr28:7144531-7145020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 105
               

               
Conread position:
               
217-697
               

               
Cow position:
               
chr28:20124528-20125003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 118
               

               
Conread position:
               
218-626
               

               
Cow position:
               
chr28:25563820-25564229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
126, 211
               

               
Conread position:
               
218-684
               

               
Cow position:
               
chr28:28766166-28765695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 152
               

               
Conread position:
               
218-696
               

               
Cow position:
               
chr28:17638123-17637637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
130, 104
               

               
Conread position:
               
219-680
               

               
Cow position:
               
chr28:30327336-30326897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
223-697
               

               
Cow position:
               
chr28:4884514-4884032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
225-411
               

               
Cow position:
               
chr28:20760173-20759984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
225-433
               

               
Cow position:
               
chr28:16354869-16354648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
86, 22
               

               
Conread position:
               
225-445
               

               
Cow position:
               
chr28:34636429-34636638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
67, 72
               

               
Conread position:
               
225-457
               

               
Cow position:
               
chr28:14493293-14493521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 23
               

               
Conread position:
               
225-463
               

               
Cow position:
               
chr28:34150780-34150540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
115, 84
               

               
Conread position:
               
225-479
               

               
Cow position:
               
chr28:2905331-2905575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
225-483
               

               
Cow position:
               
chr28:7590432-7590177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
10, 88
               

               
Conread position:
               
225-484
               

               
Cow position:
               
chr28:15007912-15008166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
20, 85
               

               
Conread position:
               
225-487
               

               
Cow position:
               
chr28:5773393-5773644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
225-494
               

               
Cow position:
               
chr28:24646291-24646554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 169
               

               
Conread position:
               
225-503
               

               
Cow position:
               
chr28:1957369-1957648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
225-517
               

               
Cow position:
               
chr28:25424551-25424264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
225-544
               

               
Cow position:
               
chr28:22484999-22485318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
140, 40
               

               
Conread position:
               
225-553
               

               
Cow position:
               
chr28:2814748-2814435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
205, 58
               

               
Conread position:
               
225-553
               

               
Cow position:
               
chr28:9177003-9176678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
121, 159
               

               
Conread position:
               
225-559
               

               
Cow position:
               
chr28:15263974-15263638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 229
               

               
Conread position:
               
225-561
               

               
Cow position:
               
chr28:31987356-31987696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
139, 12
               

               
Conread position:
               
225-582
               

               
Cow position:
               
chr28:23675895-23676241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 22
               

               
Conread position:
               
225-590
               

               
Cow position:
               
chr28:4057737-4058094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
204, 65
               

               
Conread position:
               
225-606
               

               
Cow position:
               
chr28:13607636-13608013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 79
               

               
Conread position:
               
225-610
               

               
Cow position:
               
chr28:23410573-23410192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 110
               

               
Conread position:
               
225-616
               

               
Cow position:
               
chr28:22321173-22321557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
225-617
               

               
Cow position:
               
chr28:29199478-29199868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 22
               

               
Conread position:
               
225-620
               

               
Cow position:
               
chr28:2898746-2899130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 97
               

               
Conread position:
               
225-641
               

               
Cow position:
               
chr28:26103466-26103857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 87
               

               
Conread position:
               
225-645
               

               
Cow position:
               
chr28:33051771-33052203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 320
               

               
Conread position:
               
225-656
               

               
Cow position:
               
chr28:16386755-16386347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 87
               

               
Conread position:
               
225-681
               

               
Cow position:
               
chr28:3024161-3023711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 97
               

               
Conread position:
               
225-681
               

               
Cow position:
               
chr28:27218071-27218530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 225
               

               
Conread position:
               
225-684
               

               
Cow position:
               
chr28:25056722-25057164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
225-685
               

               
Cow position:
               
chr28:5203953-5204394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 20
               

               
Conread position:
               
225-685
               

               
Cow position:
               
chr28:22345770-22346231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 49
               

               
Conread position:
               
225-687
               

               
Cow position:
               
chr28:4016286-4016734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
225-687
               

               
Cow position:
               
chr28:24368200-24367732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 23
               

               
Conread position:
               
225-691
               

               
Cow position:
               
chr28:5931104-5931560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 95
               

               
Conread position:
               
225-694
               

               
Cow position:
               
chr28:34133615-34134066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
420, 22
               

               
Conread position:
               
225-695
               

               
Cow position:
               
chr28:34878222-34877753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 231
               

               
Conread position:
               
226-520
               

               
Cow position:
               
chr28:5904488-5904774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 21
               

               
Conread position:
               
226-585
               

               
Cow position:
               
chr28:10529731-10529384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
146, 100
               

               
Conread position:
               
226-597
               

               
Cow position:
               
chr28:13865597-13865957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 74
               

               
Conread position:
               
226-610
               

               
Cow position:
               
chr28:8022359-8021971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 67
               

               
Conread position:
               
226-689
               

               
Cow position:
               
chr28:13474058-13474512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 21
               

               
Conread position:
               
226-695
               

               
Cow position:
               
chr28:33884161-33884622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 60
               

               
Conread position:
               
227-446
               

               
Cow position:
               
chr28:16238412-16238203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
24, 127
               

               
Conread position:
               
227-504
               

               
Cow position:
               
chr28:8682098-8681813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 77
               

               
Conread position:
               
227-591
               

               
Cow position:
               
chr28:5826701-5827062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
104, 86
               

               
Conread position:
               
227-607
               

               
Cow position:
               
chr28:11752392-11752011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 177
               

               
Conread position:
               
227-617
               

               
Cow position:
               
chr28:28163847-28164221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
227-619
               

               
Cow position:
               
chr28:34561111-34561482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 81
               

               
Conread position:
               
227-633
               

               
Cow position:
               
chr28:25596385-25596774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 82
               

               
Conread position:
               
227-663
               

               
Cow position:
               
chr28:4938591-4938982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 90
               

               
Conread position:
               
227-676
               

               
Cow position:
               
chr28:6059720-6059271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 171
               

               
Conread position:
               
227-679
               

               
Cow position:
               
chr28:3745954-3746400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 195
               

               
Conread position:
               
228-592
               

               
Cow position:
               
chr28:15044101-15043749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 55
               

               
Conread position:
               
228-647
               

               
Cow position:
               
chr28:11687279-11686852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 275
               

               
Conread position:
               
229-597
               

               
Cow position:
               
chr28:14508612-14508251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
229-618
               

               
Cow position:
               
chr28:14649102-14649482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
229-647
               

               
Cow position:
               
chr28:16346771-16346370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 22
               

               
Conread position:
               
229-684
               

               
Cow position:
               
chr28:4070724-4071166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
230-442
               

               
Cow position:
               
chr28:13902203-13902002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
104, 113
               

               
Conread position:
               
231-683
               

               
Cow position:
               
chr28:11423047-11422612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 40
               

               
Conread position:
               
233-589
               

               
Cow position:
               
chr28:5128968-5128618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 14
               

               
Conread position:
               
233-595
               

               
Cow position:
               
chr28:13176920-13176573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 142
               

               
Conread position:
               
233-600
               

               
Cow position:
               
chr28:12892658-12892316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
233-611
               

               
Cow position:
               
chr28:25249114-25249486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 76
               

               
Conread position:
               
234-543
               

               
Cow position:
               
chr28:4914342-4914027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 196
               

               
Conread position:
               
234-615
               

               
Cow position:
               
chr28:26220021-26220392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 72
               

               
Conread position:
               
235-695
               

               
Cow position:
               
chr28:9636696-9636241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 213
               

               
Conread position:
               
236-684
               

               
Cow position:
               
chr28:11829182-11828751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
237-504
               

               
Cow position:
               
chr28:5553167-5552912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
237-599
               

               
Cow position:
               
chr28:11818197-11817844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 15
               

               
Conread position:
               
237-681
               

               
Cow position:
               
chr28:9285615-9285172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 293
               

               
Conread position:
               
238-504
               

               
Cow position:
               
chr28:34082258-34081985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
241-446
               

               
Cow position:
               
chr28:13447475-13447668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
129, 71
               

               
Conread position:
               
243-487
               

               
Cow position:
               
chr28:4022151-4022396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
99, 203
               

               
Conread position:
               
243-517
               

               
Cow position:
               
chr28:10762442-10762705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
251, 78
               

               
Conread position:
               
243-683
               

               
Cow position:
               
chr28:5144754-5144307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 70
               

               
Conread position:
               
243-683
               

               
Cow position:
               
chr28:11884754-11884324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 61
               

               
Conread position:
               
244-487
               

               
Cow position:
               
chr28:19394400-19394627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
120, 80
               

               
Conread position:
               
244-685
               

               
Cow position:
               
chr28:12951202-12951625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 76
               

               
Conread position:
               
244-692
               

               
Cow position:
               
chr28:34430657-34430207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 201
               

               
Conread position:
               
244-697
               

               
Cow position:
               
chr28:9099704-9100151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
245-421
               

               
Cow position:
               
chr28:17362809-17362643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
6, 37
               

               
Conread position:
               
245-460
               

               
Cow position:
               
chr28:5658324-5658539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
247-438
               

               
Cow position:
               
chr28:17625364-17625169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
93, 182
               

               
Conread position:
               
247-441
               

               
Cow position:
               
chr28:3077765-3077955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
247-442
               

               
Cow position:
               
chr28:8656963-8656774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
101, 18
               

               
Conread position:
               
247-494
               

               
Cow position:
               
chr28:10212925-10212702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
247-603
               

               
Cow position:
               
chr28:33163695-33163339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 250
               

               
Conread position:
               
247-686
               

               
Cow position:
               
chr28:750999-751438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
247-687
               

               
Cow position:
               
chr28:26340109-26340545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 148
               

               
Conread position:
               
247-693
               

               
Cow position:
               
chr28:10053566-10053114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 55
               

               
Conread position:
               
247-696
               

               
Cow position:
               
chr28:10606847-10606419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
248-483
               

               
Cow position:
               
chr28:12987174-12987411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
248-610
               

               
Cow position:
               
chr28:26684886-26685242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 123
               

               
Conread position:
               
248-697
               

               
Cow position:
               
chr28:8347508-8347952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 64
               

               
Conread position:
               
249-695
               

               
Cow position:
               
chr28:1837767-1838215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 8
               

               
Conread position:
               
251-410
               

               
Cow position:
               
chr28:2888206-2888366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
93, 60
               

               
Conread position:
               
251-674
               

               
Cow position:
               
chr28:5273649-5273229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
114, 35
               

               
Conread position:
               
253-641
               

               
Cow position:
               
chr28:18625001-18625396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 209
               

               
Conread position:
               
254-434
               

               
Cow position:
               
chr28:5188622-5188445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
116, 68
               

               
Conread position:
               
255-626
               

               
Cow position:
               
chr28:15082144-15081775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
257-514
               

               
Cow position:
               
chr28:28222119-28222375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
257-540
               

               
Cow position:
               
chr28:2738029-2737745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 201
               

               
Conread position:
               
259-421
               

               
Cow position:
               
chr28:10035184-10035345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
259-606
               

               
Cow position:
               
chr28:24017788-24018110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
71, 48
               

               
Conread position:
               
259-639
               

               
Cow position:
               
chr28:25806367-25806721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
259-692
               

               
Cow position:
               
chr28:5074720-5074305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 53
               

               
Conread position:
               
260-443
               

               
Cow position:
               
chr28:10478557-10478375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
114, 84
               

               
Conread position:
               
260-444
               

               
Cow position:
               
chr28:9108227-9108414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
48, 183
               

               
Conread position:
               
260-463
               

               
Cow position:
               
chr28:2124216-2124414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
108, 72
               

               
Conread position:
               
261-461
               

               
Cow position:
               
chr28:6277754-6277565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
170, 85
               

               
Conread position:
               
264-680
               

               
Cow position:
               
chr28:5437302-5436882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 187
               

               
Conread position:
               
265-432
               

               
Cow position:
               
chr28:31248637-31248802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
265-571
               

               
Cow position:
               
chr28:25282995-25283286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
265-687
               

               
Cow position:
               
chr28:29416926-29416514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 126
               

               
Conread position:
               
265-694
               

               
Cow position:
               
chr28:14710135-14710557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
267-524
               

               
Cow position:
               
chr28:3714594-3714847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
173, 69
               

               
Conread position:
               
268-446
               

               
Cow position:
               
chr28:8935727-8935905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
76, 157
               

               
Conread position:
               
269-487
               

               
Cow position:
               
chr28:22739595-22739800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
100, 30
               

               
Conread position:
               
271-680
               

               
Cow position:
               
chr28:4090248-4089857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
372, 51
               

               
Conread position:
               
271-696
               

               
Cow position:
               
chr28:28631519-28631964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
274-470
               

               
Cow position:
               
chr28:25459325-25459521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
40, 169
               

               
Conread position:
               
274-596
               

               
Cow position:
               
chr28:14512325-14512650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
173, 43
               

               
Conread position:
               
275-579
               

               
Cow position:
               
chr28:18186345-18186656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 183
               

               
Conread position:
               
275-590
               

               
Cow position:
               
chr28:32734893-32735201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
127, 37
               

               
Conread position:
               
275-695
               

               
Cow position:
               
chr28:27313948-27313511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
69, 157
               

               
Conread position:
               
276-680
               

               
Cow position:
               
chr28:10844920-10845306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
59, 69
               

               
Conread position:
               
276-696
               

               
Cow position:
               
chr28:4158753-4159183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 137
               

               
Conread position:
               
277-591
               

               
Cow position:
               
chr28:3169389-3169077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 33
               

               
Conread position:
               
277-684
               

               
Cow position:
               
chr28:4809596-4809979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 111
               

               
Conread position:
               
280-680
               

               
Cow position:
               
chr28:4881440-4881045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
282-684
               

               
Cow position:
               
chr28:4835038-4834634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 134
               

               
Conread position:
               
283-683
               

               
Cow position:
               
chr28:10999860-10999459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
59, 41
               

               
Conread position:
               
283-696
               

               
Cow position:
               
chr28:26982938-26982516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 173
               

               
Conread position:
               
284-483
               

               
Cow position:
               
chr28:15589459-15589651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 55
               

               
Conread position:
               
285-683
               

               
Cow position:
               
chr28:23724645-23724262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 134
               

               
Conread position:
               
287-487
               

               
Cow position:
               
chr28:118243-118042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
57, 163
               

               
Conread position:
               
289-484
               

               
Cow position:
               
chr28:19023947-19024150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
289-530
               

               
Cow position:
               
chr28:3000780-3000556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
50, 114
               

               
Conread position:
               
289-560
               

               
Cow position:
               
chr28:17235914-17235655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
289-612
               

               
Cow position:
               
chr28:18760228-18759922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
53, 23
               

               
Conread position:
               
289-684
               

               
Cow position:
               
chr28:30937852-30937475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 129
               

               
Conread position:
               
289-694
               

               
Cow position:
               
chr28:6091174-6091575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 119
               

               
Conread position:
               
289-697
               

               
Cow position:
               
chr28:11866855-11866445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 106
               

               
Conread position:
               
290-680
               

               
Cow position:
               
chr28:13290319-13289953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
291-618
               

               
Cow position:
               
chr28:2752684-2752355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 95
               

               
Conread position:
               
291-641
               

               
Cow position:
               
chr28:9684504-9684178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 97
               

               
Conread position:
               
291-684
               

               
Cow position:
               
chr28:2523739-2524151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
51, 8
               

               
Conread position:
               
294-514
               

               
Cow position:
               
chr28:28903847-28903627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
295-615
               

               
Cow position:
               
chr28:2132102-2131788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 75
               

               
Conread position:
               
296-508
               

               
Cow position:
               
chr28:7608161-7607946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
46, 29
               

               
Conread position:
               
297-494
               

               
Cow position:
               
chr28:657625-657436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
297-692
               

               
Cow position:
               
chr28:25728028-25728398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
67, 32
               

               
Conread position:
               
298-696
               

               
Cow position:
               
chr28:13245373-13245787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
299-483
               

               
Cow position:
               
chr28:14983073-14983257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 140
               

               
Conread position:
               
299-626
               

               
Cow position:
               
chr28:6643457-6643134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 76
               

               
Conread position:
               
299-697
               

               
Cow position:
               
chr28:26264628-26265052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
300-684
               

               
Cow position:
               
chr28:4643939-4643562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
301-661
               

               
Cow position:
               
chr28:1537997-1538348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
304-626
               

               
Cow position:
               
chr28:23668954-23668634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
307-664
               

               
Cow position:
               
chr28:15538859-15538515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
308-693
               

               
Cow position:
               
chr28:11762531-11762915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
309-692
               

               
Cow position:
               
chr28:1632823-1632435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
35, 7
               

               
Conread position:
               
311-597
               

               
Cow position:
               
chr28:33285281-33284992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 66
               

               
Conread position:
               
312-697
               

               
Cow position:
               
chr28:5199666-5200049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
183, 18
               

               
Conread position:
               
312-697
               

               
Cow position:
               
chr28:29989279-29988887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 99
               

               
Conread position:
               
314-592
               

               
Cow position:
               
chr28:32365681-32365956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
320-585
               

               
Cow position:
               
chr28:2872760-2873025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 6
               

               
Conread position:
               
322-512
               

               
Cow position:
               
chr28:33032109-33032296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
172, 49
               

               
Conread position:
               
322-695
               

               
Cow position:
               
chr28:8358748-8359120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
323-697
               

               
Cow position:
               
chr28:4763722-4764099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
75, 149
               

               
Conread position:
               
324-676
               

               
Cow position:
               
chr28:24082116-24082470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
325-553
               

               
Cow position:
               
chr28:15577414-15577188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
19, 104
               

               
Conread position:
               
327-683
               

               
Cow position:
               
chr28:30746879-30746531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 101
               

               
Conread position:
               
333-617
               

               
Cow position:
               
chr28:4355403-4355684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
338-618
               

               
Cow position:
               
chr28:27161470-27161188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 114
               

               
Conread position:
               
339-600
               

               
Cow position:
               
chr28:17602010-17601754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
341-681
               

               
Cow position:
               
chr28:19262723-19262379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
23, 119
               

               
Conread position:
               
341-684
               

               
Cow position:
               
chr28:3449165-3449519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
341-694
               

               
Cow position:
               
chr28:10863916-10863582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 47
               

               
Conread position:
               
342-641
               

               
Cow position:
               
chr28:9812150-9812431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 26
               

               
Conread position:
               
342-676
               

               
Cow position:
               
chr28:5193187-5193523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
343-680
               

               
Cow position:
               
chr28:7009107-7008777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 39
               

               
Conread position:
               
343-684
               

               
Cow position:
               
chr28:8140350-8140692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 96
               

               
Conread position:
               
343-684
               

               
Cow position:
               
chr28:10057724-10057377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
343-685
               

               
Cow position:
               
chr28:11079175-11079509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 5
               

               
Conread position:
               
344-693
               

               
Cow position:
               
chr28:10495408-10495080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
151, 24
               

               
Conread position:
               
346-691
               

               
Cow position:
               
chr28:11346614-11346275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
349-684
               

               
Cow position:
               
chr28:22813139-22813456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
149, 50
               

               
Conread position:
               
349-693
               

               
Cow position:
               
chr28:12672587-12672245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
140, 43
               

               
Conread position:
               
351-620
               

               
Cow position:
               
chr28:32174507-32174770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
144, 19
               

               
Conread position:
               
356-697
               

               
Cow position:
               
chr28:3484459-3484806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
105, 12
               

               
Conread position:
               
358-697
               

               
Cow position:
               
chr28:23296206-23296538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
360-674
               

               
Cow position:
               
chr28:25128768-25129082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 65
               

               
Conread position:
               
362-665
               

               
Cow position:
               
chr28:18370121-18369824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
86, 94
               

               
Conread position:
               
362-684
               

               
Cow position:
               
chr28:5577412-5577740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 77
               

               
Conread position:
               
362-694
               

               
Cow position:
               
chr28:12933844-12933519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
74, 85
               

               
Conread position:
               
363-601
               

               
Cow position:
               
chr28:5166654-5166889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 54
               

               
Conread position:
               
363-685
               

               
Cow position:
               
chr28:7372231-7371901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
131, 8
               

               
Conread position:
               
363-696
               

               
Cow position:
               
chr28:23447936-23447613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
132, 76
               

               
Conread position:
               
363-697
               

               
Cow position:
               
chr28:3011385-3011044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 94
               

               
Conread position:
               
365-684
               

               
Cow position:
               
chr28:19564338-19564027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 33
               

               
Conread position:
               
365-697
               

               
Cow position:
               
chr28:34248133-34247821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
129, 55
               

               
Conread position:
               
366-683
               

               
Cow position:
               
chr28:10977732-10978045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 88
               

               
Conread position:
               
367-697
               

               
Cow position:
               
chr28:31223674-31223335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
64, 38
               

               
Conread position:
               
368-553
               

               
Cow position:
               
chr28:12363268-12363083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 87
               

               
Conread position:
               
368-684
               

               
Cow position:
               
chr28:6358517-6358200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 24
               

               
Conread position:
               
368-685
               

               
Cow position:
               
chr28:7388872-7388566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
369-601
               

               
Cow position:
               
chr28:16246169-16245943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 45
               

               
Conread position:
               
375-695
               

               
Cow position:
               
chr28:11307608-11307297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
120, 64
               

               
Conread position:
               
376-695
               

               
Cow position:
               
chr28:5139097-5138780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
377-613
               

               
Cow position:
               
chr28:4179455-4179686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
379-618
               

               
Cow position:
               
chr28:13233205-13232972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
157, 62
               

               
Conread position:
               
379-641
               

               
Cow position:
               
chr28:17071237-17071499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 44
               

               
Conread position:
               
382-692
               

               
Cow position:
               
chr28:23578807-23579117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 65
               

               
Conread position:
               
385-637
               

               
Cow position:
               
chr28:11559724-11559476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
63, 25
               

               
Conread position:
               
385-694
               

               
Cow position:
               
chr28:7927084-7927381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
258, 60
               

               
Conread position:
               
385-697
               

               
Cow position:
               
chr28:7350567-7350870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 56
               

               
Conread position:
               
390-695
               

               
Cow position:
               
chr28:7619238-7618942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
391-506
               

               
Cow position:
               
chr28:8372593-8372708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
107, 28
               

               
Conread position:
               
391-669
               

               
Cow position:
               
chr28:4045768-4046037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
106, 36
               

               
Conread position:
               
392-610
               

               
Cow position:
               
chr28:30865336-30865548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 16
               

               
Conread position:
               
393-684
               

               
Cow position:
               
chr28:4181921-4182209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
104, 48
               

               
Conread position:
               
394-616
               

               
Cow position:
               
chr28:12070154-12070368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
396-611
               

               
Cow position:
               
chr28:25677426-25677209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 28
               

               
Conread position:
               
396-684
               

               
Cow position:
               
chr28:24706824-24707106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
102, 47
               

               
Conread position:
               
397-614
               

               
Cow position:
               
chr28:3161032-3160816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
98, 50
               

               
Conread position:
               
397-687
               

               
Cow position:
               
chr28:11348351-11348637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
101, 28
               

               
Conread position:
               
402-688
               

               
Cow position:
               
chr28:3411066-3410779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
9, 43
               

               
Conread position:
               
407-680
               

               
Cow position:
               
chr28:20759770-20759489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 40
               

               
Conread position:
               
409-684
               

               
Cow position:
               
chr28:4013020-4013291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
410-680
               

               
Cow position:
               
chr28:777602-777880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
17, 129
               

               
Conread position:
               
410-694
               

               
Cow position:
               
chr28:24646525-24646798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
411-608
               

               
Cow position:
               
chr28:4765611-4765804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
414-626
               

               
Cow position:
               
chr28:3275429-3275637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
80, 119
               

               
Conread position:
               
416-659
               

               
Cow position:
               
chr28:20397430-20397191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
416-696
               

               
Cow position:
               
chr28:3445542-3445260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
81, 32
               

               
Conread position:
               
428-601
               

               
Cow position:
               
chr28:2762146-2762317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
70, 22
               

               
Conread position:
               
428-683
               

               
Cow position:
               
chr28:3726261-3726001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
431-680
               

               
Cow position:
               
chr28:4873393-4873120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
436-679
               

               
Cow position:
               
chr28:2279630-2279399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
439-677
               

               
Cow position:
               
chr28:6975203-6975435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
439-683
               

               
Cow position:
               
chr28:17680584-17680832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
439-686
               

               
Cow position:
               
chr28:17739786-17740035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
439-695
               

               
Cow position:
               
chr28:17949153-17948899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
58, 96
               

               
Conread position:
               
444-695
               

               
Cow position:
               
chr28:11816701-11816465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
53, 92
               

               
Conread position:
               
445-697
               

               
Cow position:
               
chr28:659325-659069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 32
               

               
Conread position:
               
450-618
               

               
Cow position:
               
chr28:7498178-7498008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
9, 87
               

               
Conread position:
               
450-618
               

               
Cow position:
               
chr28:22148043-22147879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
450-684
               

               
Cow position:
               
chr28:6283521-6283281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
450-696
               

               
Cow position:
               
chr28:7437491-7437256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
453-694
               

               
Cow position:
               
chr28:9705627-9705874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
454-627
               

               
Cow position:
               
chr28:8149657-8149484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
454-692
               

               
Cow position:
               
chr28:7132113-7131875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
455-618
               

               
Cow position:
               
chr28:2772689-2772849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
455-696
               

               
Cow position:
               
chr28:4823580-4823821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
455-697
               

               
Cow position:
               
chr28:4937266-4937018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
456-555
               

               
Cow position:
               
chr28:17393753-17393853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
456-633
               

               
Cow position:
               
chr28:10775736-10775560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 83
               

               
Conread position:
               
456-680
               

               
Cow position:
               
chr28:5630075-5630303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 80
               

               
Conread position:
               
456-694
               

               
Cow position:
               
chr28:5205248-5205468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
44, 71
               

               
Conread position:
               
456-696
               

               
Cow position:
               
chr28:11059478-11059712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
185, 78
               

               
Conread position:
               
456-696
               

               
Cow position:
               
chr28:18770062-18770304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
456-697
               

               
Cow position:
               
chr28:13356390-13356145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
457-620
               

               
Cow position:
               
chr28:32179674-32179833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 54
               

               
Conread position:
               
457-685
               

               
Cow position:
               
chr28:11743841-11743619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
38, 47
               

               
Conread position:
               
458-600
               

               
Cow position:
               
chr28:3147460-3147599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 66
               

               
Conread position:
               
458-685
               

               
Cow position:
               
chr28:11987153-11987372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
458-685
               

               
Cow position:
               
chr28:12055391-12055610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
458-685
               

               
Cow position:
               
chr28:19216800-19217021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 65
               

               
Conread position:
               
458-693
               

               
Cow position:
               
chr28:21008686-21008454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
459-696
               

               
Cow position:
               
chr28:5254854-5255090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
460-681
               

               
Cow position:
               
chr28:11016389-11016609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
460-697
               

               
Cow position:
               
chr28:4101501-4101734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
39, 77
               

               
Conread position:
               
461-695
               

               
Cow position:
               
chr28:5231920-5232156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
34, 74
               

               
Conread position:
               
461-697
               

               
Cow position:
               
chr28:10964404-10964629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
465-695
               

               
Cow position:
               
chr28:29850829-29850606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
32, 70
               

               
Conread position:
               
466-697
               

               
Cow position:
               
chr28:13048296-13048063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
121, 68
               

               
Conread position:
               
467-680
               

               
Cow position:
               
chr28:15362567-15362782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
28, 69
               

               
Conread position:
               
467-684
               

               
Cow position:
               
chr28:8259616-8259840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
28, 68
               

               
Conread position:
               
468-684
               

               
Cow position:
               
chr28:28501222-28501450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
471-693
               

               
Cow position:
               
chr28:8936142-8936366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
472-588
               

               
Cow position:
               
chr28:25675512-25675396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 64
               

               
Conread position:
               
473-618
               

               
Cow position:
               
chr28:3397203-3397065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
473-625
               

               
Cow position:
               
chr28:17601560-17601408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
473-668
               

               
Cow position:
               
chr28:16879567-16879760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
473-680
               

               
Cow position:
               
chr28:4364828-4364619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
24, 50
               

               
Conread position:
               
473-681
               

               
Cow position:
               
chr28:5805665-5805867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
473-681
               

               
Cow position:
               
chr28:8396329-8396530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
473-687
               

               
Cow position:
               
chr28:32358102-32358316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
171, 61
               

               
Conread position:
               
473-693
               

               
Cow position:
               
chr28:5235875-5236091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
473-696
               

               
Cow position:
               
chr28:26826217-26826444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
170, 25
               

               
Conread position:
               
475-676
               

               
Cow position:
               
chr28:19039023-19038818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
23, 60
               

               
Conread position:
               
475-680
               

               
Cow position:
               
chr28:30902122-30902325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
476-609
               

               
Cow position:
               
chr28:4248654-4248523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
129, 58
               

               
Conread position:
               
476-639
               

               
Cow position:
               
chr28:27429028-27429183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
476-681
               

               
Cow position:
               
chr28:6321814-6322024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
476-697
               

               
Cow position:
               
chr28:6563901-6563672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
478-610
               

               
Cow position:
               
chr28:4051196-4051329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
5, 59
               

               
Conread position:
               
478-676
               

               
Cow position:
               
chr28:4877432-4877232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
479-696
               

               
Cow position:
               
chr28:5552714-5552490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
122, 55
               

               
Conread position:
               
481-680
               

               
Cow position:
               
chr28:24996611-24996414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 54
               

               
Conread position:
               
481-681
               

               
Cow position:
               
chr28:4876445-4876643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
481-681
               

               
Cow position:
               
chr28:7557732-7557522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
16, 54
               

               
Conread position:
               
484-640
               

               
Cow position:
               
chr28:10212422-10212270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
484-680
               

               
Cow position:
               
chr28:10891303-10891122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 48
               

               
Conread position:
               
485-685
               

               
Cow position:
               
chr28:9109222-9109419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 50
               

               
Conread position:
               
486-697
               

               
Cow position:
               
chr28:3137550-3137775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
9, 49
               

               
Conread position:
               
493-611
               

               
Cow position:
               
chr28:18533891-18533775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
496-676
               

               
Cow position:
               
chr28:20968562-20968376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
98, 38
               

               
Conread position:
               
496-679
               

               
Cow position:
               
chr28:2821271-2821464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
496-680
               

               
Cow position:
               
chr28:2777548-2777734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
147, 38
               

               
Conread position:
               
496-680
               

               
Cow position:
               
chr28:4022691-4022875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
147, 38
               

               
Conread position:
               
496-680
               

               
Cow position:
               
chr28:12991160-12991339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
162, 38
               

               
Conread position:
               
496-684
               

               
Cow position:
               
chr28:117745-117548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
496-685
               

               
Cow position:
               
chr28:11398779-11398585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
145, 38
               

               
Conread position:
               
496-693
               

               
Cow position:
               
chr28:11827706-11827907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
147, 27
               

               
Conread position:
               
496-695
               

               
Cow position:
               
chr28:7644758-7644960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 38
               

               
Conread position:
               
496-695
               

               
Cow position:
               
chr28:10480793-10480588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 187
               

               
Conread position:
               
496-696
               

               
Cow position:
               
chr28:32014802-32015008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
147, 38
               

               
Conread position:
               
498-685
               

               
Cow position:
               
chr28:2151420-2151231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
145, 37
               

               
Conread position:
               
498-695
               

               
Cow position:
               
chr28:10203139-10203331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
145, 36
               

               
Conread position:
               
498-697
               

               
Cow position:
               
chr28:4163561-4163358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
142, 13
               

               
Conread position:
               
499-641
               

               
Cow position:
               
chr28:18608347-18608206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
499-680
               

               
Cow position:
               
chr28:5609896-5609714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
499-684
               

               
Cow position:
               
chr28:118630-118824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
499-684
               

               
Cow position:
               
chr28:10958823-10959007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
499-696
               

               
Cow position:
               
chr28:11411513-11411320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
144, 37
               

               
Conread position:
               
499-696
               

               
Cow position:
               
chr28:17620339-17620137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
144, 28
               

               
Conread position:
               
499-697
               

               
Cow position:
               
chr28:13448144-13448339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
144, 35
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr28:10890713-10890541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
158, 34
               

               
Conread position:
               
500-695
               

               
Cow position:
               
chr28:3678384-3678578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
92, 34
               

               
Conread position:
               
501-692
               

               
Cow position:
               
chr28:22085519-22085330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
157, 33
               

               
Conread position:
               
503-639
               

               
Cow position:
               
chr28:5711984-5711854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
509-679
               

               
Cow position:
               
chr28:26868120-26867951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
509-684
               

               
Cow position:
               
chr28:17943761-17943932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
509-685
               

               
Cow position:
               
chr28:4379661-4379491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
509-687
               

               
Cow position:
               
chr28:11562215-11562030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
509-697
               

               
Cow position:
               
chr28:2077531-2077724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
512-641
               

               
Cow position:
               
chr28:8167320-8167194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
512-667
               

               
Cow position:
               
chr28:3729985-3729829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
130, 22
               

               
Conread position:
               
513-608
               

               
Cow position:
               
chr28:13269762-13269856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
513-683
               

               
Cow position:
               
chr28:8681395-8681230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
143, 22
               

               
Conread position:
               
513-696
               

               
Cow position:
               
chr28:9677704-9677883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
128, 21
               

               
Conread position:
               
513-697
               

               
Cow position:
               
chr28:8827195-8827387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
513-697
               

               
Cow position:
               
chr28:11305598-11305416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
514-618
               

               
Cow position:
               
chr28:8258860-8258963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
515-677
               

               
Cow position:
               
chr28:16569842-16570005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
124, 19
               

               
Conread position:
               
515-681
               

               
Cow position:
               
chr28:4077309-4077132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
87, 19
               

               
Conread position:
               
515-684
               

               
Cow position:
               
chr28:26960872-26960705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 19
               

               
Conread position:
               
515-692
               

               
Cow position:
               
chr28:10762931-10763104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
143, 19
               

               
Conread position:
               
516-696
               

               
Cow position:
               
chr28:4027425-4027251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
142, 18
               

               
Conread position:
               
516-696
               

               
Cow position:
               
chr28:25518727-25518536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
517-680
               

               
Cow position:
               
chr28:17738114-17737946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
518-697
               

               
Cow position:
               
chr28:6301121-6301306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
124, 16
               

               
Conread position:
               
518-697
               

               
Cow position:
               
chr28:16200703-16200521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
121, 16
               

               
Conread position:
               
519-639
               

               
Cow position:
               
chr28:24726396-24726283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
519-680
               

               
Cow position:
               
chr28:3759031-3759201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
94, 15
               

               
Conread position:
               
519-688
               

               
Cow position:
               
chr28:8656125-8655954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 15
               

               
Conread position:
               
519-696
               

               
Cow position:
               
chr28:29500441-29500627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
81, 15
               

               
Conread position:
               
522-684
               

               
Cow position:
               
chr28:3311181-3311011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
522-697
               

               
Cow position:
               
chr28:4866529-4866356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
136, 12
               

               
Conread position:
               
532-694
               

               
Cow position:
               
chr28:3257041-3257210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 72
               

               
Conread position:
               
532-696
               

               
Cow position:
               
chr28:24767457-24767626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 156
               

               
Conread position:
               
533-680
               

               
Cow position:
               
chr28:4588372-4588518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
110, 68
               

               
Conread position:
               
533-692
               

               
Cow position:
               
chr28:21263211-21263369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 70
               

               
Conread position:
               
533-692
               

               
Cow position:
               
chr28:22362307-22362459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
110, 84
               

               
Conread position:
               
533-697
               

               
Cow position:
               
chr28:24238423-24238263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
125, 61
               

               
Conread position:
               
533-697
               

               
Cow position:
               
chr28:24651552-24651395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
110, 84
               

               
Conread position:
               
535-666
               

               
Cow position:
               
chr28:4100703-4100574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
108, 58
               

               
Conread position:
               
535-693
               

               
Cow position:
               
chr28:21118733-21118898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
107, 162
               

               
Conread position:
               
536-684
               

               
Cow position:
               
chr28:22278575-22278417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
538-693
               

               
Cow position:
               
chr28:23728246-23728092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 41
               

               
Conread position:
               
540-695
               

               
Cow position:
               
chr28:134025-133862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
67, 151
               

               
Conread position:
               
557-692
               

               
Cow position:
               
chr28:16964889-16964749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
85, 131
               
Show alignments to all cow chromosomes.