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Cow genome map

           
Conread name:
           
Pig3-SRG8015N22
        

               
Conread position:
               
9-531
               

               
Cow position:
               
chr5:28456862-28456331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 125
               

               
Conread position:
               
9-531
               

               
Cow position:
               
chr5:28460164-28459632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 125
               

               
Conread position:
               
9-539
               

               
Cow position:
               
chr5:26595539-26595022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 90
               

               
Conread position:
               
9-686
               

               
Cow position:
               
chr5:5855439-5856093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 90
               

               
Conread position:
               
11-400
               

               
Cow position:
               
chr5:24837387-24837001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 238
               

               
Conread position:
               
11-694
               

               
Cow position:
               
chr5:59873872-59873177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 45
               

               
Conread position:
               
12-639
               

               
Cow position:
               
chr5:14630254-14629621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 77
               

               
Conread position:
               
40-411
               

               
Cow position:
               
chr5:24643133-24642770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
55-462
               

               
Cow position:
               
chr5:1276880-1276458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
93-615
               

               
Cow position:
               
chr5:54350725-54350204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 230
               

               
Conread position:
               
114-684
               

               
Cow position:
               
chr5:4280113-4280673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 118
               

               
Conread position:
               
138-585
               

               
Cow position:
               
chr5:42744487-42744907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 71
               

               
Conread position:
               
138-697
               

               
Cow position:
               
chr5:1246959-1247507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 33
               

               
Conread position:
               
144-618
               

               
Cow position:
               
chr5:43992017-43992484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 70
               

               
Conread position:
               
146-691
               

               
Cow position:
               
chr5:20779688-20779161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
155-687
               

               
Cow position:
               
chr5:64176421-64175897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 280
               

               
Conread position:
               
159-671
               

               
Cow position:
               
chr5:58144901-58144387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
167-620
               

               
Cow position:
               
chr5:57626520-57626953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 82
               

               
Conread position:
               
167-680
               

               
Cow position:
               
chr5:25035510-25035028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 28
               

               
Conread position:
               
174-433
               

               
Cow position:
               
chr5:33467309-33467064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
224, 5
               

               
Conread position:
               
177-441
               

               
Cow position:
               
chr5:3824828-3825073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
177-626
               

               
Cow position:
               
chr5:41604331-41604791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
31, 140
               

               
Conread position:
               
178-620
               

               
Cow position:
               
chr5:458196-458650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 147
               

               
Conread position:
               
180-484
               

               
Cow position:
               
chr5:37714180-37713868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 218
               

               
Conread position:
               
182-595
               

               
Cow position:
               
chr5:37814355-37814763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 27
               

               
Conread position:
               
184-524
               

               
Cow position:
               
chr5:2500449-2500112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
184-621
               

               
Cow position:
               
chr5:28229887-28230329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 136
               

               
Conread position:
               
185-445
               

               
Cow position:
               
chr5:39049196-39049438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
161, 24
               

               
Conread position:
               
185-617
               

               
Cow position:
               
chr5:34300656-34301075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 115
               

               
Conread position:
               
185-681
               

               
Cow position:
               
chr5:32339244-32338734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 65
               

               
Conread position:
               
187-693
               

               
Cow position:
               
chr5:11668447-11667944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
187-697
               

               
Cow position:
               
chr5:15363624-15364112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 22
               

               
Conread position:
               
191-400
               

               
Cow position:
               
chr5:62261612-62261811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
191-411
               

               
Cow position:
               
chr5:66296975-66297194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
191-468
               

               
Cow position:
               
chr5:9234342-9234065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
72, 34
               

               
Conread position:
               
195-618
               

               
Cow position:
               
chr5:26477254-26476858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
31, 86
               

               
Conread position:
               
198-617
               

               
Cow position:
               
chr5:27306062-27306463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 186
               

               
Conread position:
               
200-610
               

               
Cow position:
               
chr5:28324089-28324487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 255
               

               
Conread position:
               
201-448
               

               
Cow position:
               
chr5:56753474-56753722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
141, 50
               

               
Conread position:
               
201-684
               

               
Cow position:
               
chr5:57935368-57934890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 243
               

               
Conread position:
               
203-506
               

               
Cow position:
               
chr5:34115411-34115702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 108
               

               
Conread position:
               
205-686
               

               
Cow position:
               
chr5:19278941-19278472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
206-684
               

               
Cow position:
               
chr5:21828614-21829094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 128
               

               
Conread position:
               
207-525
               

               
Cow position:
               
chr5:45940854-45940541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 84
               

               
Conread position:
               
207-614
               

               
Cow position:
               
chr5:44994284-44993893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 40
               

               
Conread position:
               
207-695
               

               
Cow position:
               
chr5:47601570-47602048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 43
               

               
Conread position:
               
208-462
               

               
Cow position:
               
chr5:73252848-73253097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
209-693
               

               
Cow position:
               
chr5:62107740-62107244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
56, 46
               

               
Conread position:
               
211-626
               

               
Cow position:
               
chr5:40388109-40387714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
219, 98
               

               
Conread position:
               
212-457
               

               
Cow position:
               
chr5:6986916-6987166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
128, 160
               

               
Conread position:
               
212-489
               

               
Cow position:
               
chr5:6130114-6130385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
132, 29
               

               
Conread position:
               
212-693
               

               
Cow position:
               
chr5:38832875-38833352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 44
               

               
Conread position:
               
213-685
               

               
Cow position:
               
chr5:64139322-64139795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 34
               

               
Conread position:
               
214-412
               

               
Cow position:
               
chr5:50729255-50729457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
130, 112
               

               
Conread position:
               
214-420
               

               
Cow position:
               
chr5:69099286-69099497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
214-421
               

               
Cow position:
               
chr5:63917650-63917444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
214-424
               

               
Cow position:
               
chr5:35174544-35174330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
214-428
               

               
Cow position:
               
chr5:59298199-59297987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
129, 115
               

               
Conread position:
               
214-432
               

               
Cow position:
               
chr5:20971318-20971098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
134, 74
               

               
Conread position:
               
214-432
               

               
Cow position:
               
chr5:29255429-29255207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
214-432
               

               
Cow position:
               
chr5:64062112-64062334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
214-442
               

               
Cow position:
               
chr5:30816475-30816706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 141
               

               
Conread position:
               
214-445
               

               
Cow position:
               
chr5:6575823-6575601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
150, 26
               

               
Conread position:
               
214-452
               

               
Cow position:
               
chr5:4507201-4506955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 216
               

               
Conread position:
               
214-461
               

               
Cow position:
               
chr5:42667628-42667384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
214-469
               

               
Cow position:
               
chr5:9073975-9073720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
214-479
               

               
Cow position:
               
chr5:21944141-21944419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
98, 239
               

               
Conread position:
               
214-484
               

               
Cow position:
               
chr5:23856403-23856133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
6, 107
               

               
Conread position:
               
214-489
               

               
Cow position:
               
chr5:34288710-34288437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 82
               

               
Conread position:
               
214-489
               

               
Cow position:
               
chr5:43474607-43474876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 108
               

               
Conread position:
               
214-489
               

               
Cow position:
               
chr5:51357744-51357470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 228
               

               
Conread position:
               
214-493
               

               
Cow position:
               
chr5:49558919-49559216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
48, 116
               

               
Conread position:
               
214-494
               

               
Cow position:
               
chr5:34915902-34916167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
214-494
               

               
Cow position:
               
chr5:70290245-70290523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
151, 108
               

               
Conread position:
               
214-502
               

               
Cow position:
               
chr5:47888955-47888666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 220
               

               
Conread position:
               
214-506
               

               
Cow position:
               
chr5:4797551-4797274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 109
               

               
Conread position:
               
214-506
               

               
Cow position:
               
chr5:62826995-62826703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
214-508
               

               
Cow position:
               
chr5:59443491-59443201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 43
               

               
Conread position:
               
214-512
               

               
Cow position:
               
chr5:60126135-60126430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 23
               

               
Conread position:
               
214-524
               

               
Cow position:
               
chr5:20554989-20554687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
126, 33
               

               
Conread position:
               
214-532
               

               
Cow position:
               
chr5:13691816-13691492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 217
               

               
Conread position:
               
214-541
               

               
Cow position:
               
chr5:47313233-47313556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
130, 89
               

               
Conread position:
               
214-549
               

               
Cow position:
               
chr5:33414645-33414320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 33
               

               
Conread position:
               
214-550
               

               
Cow position:
               
chr5:34049869-34050210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 216
               

               
Conread position:
               
214-550
               

               
Cow position:
               
chr5:49522488-49522822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
131, 224
               

               
Conread position:
               
214-550
               

               
Cow position:
               
chr5:61600172-61600499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 216
               

               
Conread position:
               
214-550
               

               
Cow position:
               
chr5:65601220-65601549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 121
               

               
Conread position:
               
214-555
               

               
Cow position:
               
chr5:16508856-16509203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 33
               

               
Conread position:
               
214-576
               

               
Cow position:
               
chr5:20407903-20407560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
214-579
               

               
Cow position:
               
chr5:58793855-58793486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 240
               

               
Conread position:
               
214-591
               

               
Cow position:
               
chr5:56467464-56467822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
214-591
               

               
Cow position:
               
chr5:63992404-63992039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 117
               

               
Conread position:
               
214-594
               

               
Cow position:
               
chr5:65933168-65932807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 69
               

               
Conread position:
               
214-602
               

               
Cow position:
               
chr5:59326068-59325697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 33
               

               
Conread position:
               
214-603
               

               
Cow position:
               
chr5:6045046-6045441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 325
               

               
Conread position:
               
214-606
               

               
Cow position:
               
chr5:26377907-26377520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 98
               

               
Conread position:
               
214-608
               

               
Cow position:
               
chr5:67243684-67244068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 188
               

               
Conread position:
               
214-610
               

               
Cow position:
               
chr5:25231254-25230865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 186
               

               
Conread position:
               
214-610
               

               
Cow position:
               
chr5:31640187-31640575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 158
               

               
Conread position:
               
214-614
               

               
Cow position:
               
chr5:37646792-37646388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 148
               

               
Conread position:
               
214-616
               

               
Cow position:
               
chr5:43457756-43457373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
214-617
               

               
Cow position:
               
chr5:3204595-3204987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
130, 72
               

               
Conread position:
               
214-617
               

               
Cow position:
               
chr5:50533624-50533229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 103
               

               
Conread position:
               
214-618
               

               
Cow position:
               
chr5:4166430-4166800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 95
               

               
Conread position:
               
214-618
               

               
Cow position:
               
chr5:9090265-9089868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
214-620
               

               
Cow position:
               
chr5:41546130-41545731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
214-620
               

               
Cow position:
               
chr5:43929974-43929574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
214-636
               

               
Cow position:
               
chr5:34528321-34528721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 130
               

               
Conread position:
               
214-639
               

               
Cow position:
               
chr5:35826350-35826776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 224
               

               
Conread position:
               
214-641
               

               
Cow position:
               
chr5:3281591-3282018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 180
               

               
Conread position:
               
214-641
               

               
Cow position:
               
chr5:31469823-31469410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 52
               

               
Conread position:
               
214-667
               

               
Cow position:
               
chr5:12352022-12351599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 76
               

               
Conread position:
               
214-676
               

               
Cow position:
               
chr5:29827813-29828270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 98
               

               
Conread position:
               
214-678
               

               
Cow position:
               
chr5:14314282-14314740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 33
               

               
Conread position:
               
214-679
               

               
Cow position:
               
chr5:55756682-55756188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 341
               

               
Conread position:
               
214-680
               

               
Cow position:
               
chr5:3491961-3492411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 102
               

               
Conread position:
               
214-680
               

               
Cow position:
               
chr5:21524924-21525386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 231
               

               
Conread position:
               
214-680
               

               
Cow position:
               
chr5:30302658-30303107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
429, 43
               

               
Conread position:
               
214-680
               

               
Cow position:
               
chr5:38853119-38853577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 212
               

               
Conread position:
               
214-680
               

               
Cow position:
               
chr5:53855464-53855945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 48
               

               
Conread position:
               
214-681
               

               
Cow position:
               
chr5:28302980-28302529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 108
               

               
Conread position:
               
214-681
               

               
Cow position:
               
chr5:49685521-49685040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 138
               

               
Conread position:
               
214-681
               

               
Cow position:
               
chr5:69337592-69338041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
214-683
               

               
Cow position:
               
chr5:12873504-12873981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 68
               

               
Conread position:
               
214-684
               

               
Cow position:
               
chr5:9894367-9893895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
214-684
               

               
Cow position:
               
chr5:28330572-28330109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
155, 106
               

               
Conread position:
               
214-684
               

               
Cow position:
               
chr5:42845840-42845367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 43
               

               
Conread position:
               
214-684
               

               
Cow position:
               
chr5:43858668-43858188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 79
               

               
Conread position:
               
214-684
               

               
Cow position:
               
chr5:43923389-43922940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 33
               

               
Conread position:
               
214-684
               

               
Cow position:
               
chr5:50722810-50723279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 69
               

               
Conread position:
               
214-684
               

               
Cow position:
               
chr5:65941493-65941020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 22
               

               
Conread position:
               
214-685
               

               
Cow position:
               
chr5:30487008-30487458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
214-685
               

               
Cow position:
               
chr5:62172179-62172629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 12
               

               
Conread position:
               
214-693
               

               
Cow position:
               
chr5:54875920-54875453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
267, 33
               

               
Conread position:
               
214-694
               

               
Cow position:
               
chr5:26097057-26097530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
214-694
               

               
Cow position:
               
chr5:60210379-60209910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
130, 19
               

               
Conread position:
               
214-694
               

               
Cow position:
               
chr5:72035325-72034861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
130, 98
               

               
Conread position:
               
214-695
               

               
Cow position:
               
chr5:32975791-32975321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 33
               

               
Conread position:
               
214-695
               

               
Cow position:
               
chr5:66366291-66366738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 33
               

               
Conread position:
               
214-696
               

               
Cow position:
               
chr5:58519639-58519174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 71
               

               
Conread position:
               
214-696
               

               
Cow position:
               
chr5:59082432-59081952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
214-696
               

               
Cow position:
               
chr5:61576299-61576790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 108
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr5:5111317-5110815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 235
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr5:14550826-14550339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 237
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr5:24348871-24349359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 106
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr5:37942033-37941565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 109
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr5:42063963-42064450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr5:55967123-55966630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 228
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr5:72903464-72902997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 31
               

               
Conread position:
               
215-428
               

               
Cow position:
               
chr5:63388555-63388766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 167
               

               
Conread position:
               
215-436
               

               
Cow position:
               
chr5:48178915-48178697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
127, 57
               

               
Conread position:
               
215-440
               

               
Cow position:
               
chr5:30639089-30638877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
155, 26
               

               
Conread position:
               
215-443
               

               
Cow position:
               
chr5:44583357-44583140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
215-446
               

               
Cow position:
               
chr5:1398320-1398087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
131, 13
               

               
Conread position:
               
215-461
               

               
Cow position:
               
chr5:54427838-54427602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
215-462
               

               
Cow position:
               
chr5:61488350-61488102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
127, 31
               

               
Conread position:
               
215-474
               

               
Cow position:
               
chr5:56433562-56433823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
215-479
               

               
Cow position:
               
chr5:72150011-72150271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
215-489
               

               
Cow position:
               
chr5:50975646-50975933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
215-489
               

               
Cow position:
               
chr5:65924938-65924658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
125, 77
               

               
Conread position:
               
215-494
               

               
Cow position:
               
chr5:4630889-4631157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
124, 35
               

               
Conread position:
               
215-506
               

               
Cow position:
               
chr5:3281107-3280823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
159, 32
               

               
Conread position:
               
215-513
               

               
Cow position:
               
chr5:27403483-27403173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 216
               

               
Conread position:
               
215-515
               

               
Cow position:
               
chr5:32956329-32956036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
215-541
               

               
Cow position:
               
chr5:34638646-34638967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 109
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chr5:39094314-39094642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 88
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chr5:66815818-66815480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
21, 87
               

               
Conread position:
               
215-573
               

               
Cow position:
               
chr5:43738187-43737848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 23
               

               
Conread position:
               
215-585
               

               
Cow position:
               
chr5:63964412-63964038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 213
               

               
Conread position:
               
215-588
               

               
Cow position:
               
chr5:15598473-15598108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 209
               

               
Conread position:
               
215-588
               

               
Cow position:
               
chr5:28927832-28927464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 278
               

               
Conread position:
               
215-594
               

               
Cow position:
               
chr5:4218638-4218993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 97
               

               
Conread position:
               
215-597
               

               
Cow position:
               
chr5:360182-359800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
6, 33
               

               
Conread position:
               
215-602
               

               
Cow position:
               
chr5:51999980-52000362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 31
               

               
Conread position:
               
215-605
               

               
Cow position:
               
chr5:46323053-46322656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
215-616
               

               
Cow position:
               
chr5:17027859-17028250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 28
               

               
Conread position:
               
215-622
               

               
Cow position:
               
chr5:44752549-44752143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 32
               

               
Conread position:
               
215-622
               

               
Cow position:
               
chr5:60715594-60715202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 109
               

               
Conread position:
               
215-651
               

               
Cow position:
               
chr5:58855865-58856294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 32
               

               
Conread position:
               
215-669
               

               
Cow position:
               
chr5:64524119-64523649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 58
               

               
Conread position:
               
215-674
               

               
Cow position:
               
chr5:67932700-67932246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
382, 32
               

               
Conread position:
               
215-684
               

               
Cow position:
               
chr5:21617216-21617685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 105
               

               
Conread position:
               
215-684
               

               
Cow position:
               
chr5:28224216-28224672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
215-684
               

               
Cow position:
               
chr5:35684695-35685163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 186
               

               
Conread position:
               
215-684
               

               
Cow position:
               
chr5:66257403-66257866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 61
               

               
Conread position:
               
215-689
               

               
Cow position:
               
chr5:17087269-17086782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 217
               

               
Conread position:
               
215-692
               

               
Cow position:
               
chr5:35763051-35763482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
428, 87
               

               
Conread position:
               
215-693
               

               
Cow position:
               
chr5:15478873-15479365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 108
               

               
Conread position:
               
215-693
               

               
Cow position:
               
chr5:30844873-30845342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 18
               

               
Conread position:
               
215-695
               

               
Cow position:
               
chr5:45226063-45225581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 71
               

               
Conread position:
               
215-695
               

               
Cow position:
               
chr5:45845934-45845449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 32
               

               
Conread position:
               
215-697
               

               
Cow position:
               
chr5:39936864-39937358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 32
               

               
Conread position:
               
216-442
               

               
Cow position:
               
chr5:60519928-60520149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
216-461
               

               
Cow position:
               
chr5:31730948-31731196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 129
               

               
Conread position:
               
216-483
               

               
Cow position:
               
chr5:9859956-9859686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 31
               

               
Conread position:
               
216-487
               

               
Cow position:
               
chr5:16184851-16185117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 98
               

               
Conread position:
               
216-494
               

               
Cow position:
               
chr5:6086800-6086524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 233
               

               
Conread position:
               
216-530
               

               
Cow position:
               
chr5:32140943-32140635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 19
               

               
Conread position:
               
216-617
               

               
Cow position:
               
chr5:63987685-63987286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 31
               

               
Conread position:
               
216-633
               

               
Cow position:
               
chr5:26094407-26093991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 27
               

               
Conread position:
               
216-678
               

               
Cow position:
               
chr5:40109263-40109708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 77
               

               
Conread position:
               
216-683
               

               
Cow position:
               
chr5:26467382-26467856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 45
               

               
Conread position:
               
216-684
               

               
Cow position:
               
chr5:12323039-12322581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
216-686
               

               
Cow position:
               
chr5:55942636-55942146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 112
               

               
Conread position:
               
216-688
               

               
Cow position:
               
chr5:52165420-52164940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
216-695
               

               
Cow position:
               
chr5:44796956-44796495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 35
               

               
Conread position:
               
216-696
               

               
Cow position:
               
chr5:35208023-35208507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 156
               

               
Conread position:
               
217-443
               

               
Cow position:
               
chr5:43329930-43329705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
90, 127
               

               
Conread position:
               
217-453
               

               
Cow position:
               
chr5:23753463-23753224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
13, 31
               

               
Conread position:
               
217-454
               

               
Cow position:
               
chr5:58229466-58229703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
217-554
               

               
Cow position:
               
chr5:741186-740844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
36, 124
               

               
Conread position:
               
217-617
               

               
Cow position:
               
chr5:4710379-4709993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
217-626
               

               
Cow position:
               
chr5:28946296-28945892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 106
               

               
Conread position:
               
217-636
               

               
Cow position:
               
chr5:12709648-12710056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
217-678
               

               
Cow position:
               
chr5:53835478-53835945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 16
               

               
Conread position:
               
217-680
               

               
Cow position:
               
chr5:71494576-71495039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
217-684
               

               
Cow position:
               
chr5:20127817-20128285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 64
               

               
Conread position:
               
217-691
               

               
Cow position:
               
chr5:39447769-39447288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 104
               

               
Conread position:
               
217-694
               

               
Cow position:
               
chr5:30276458-30276924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
218-516
               

               
Cow position:
               
chr5:54405131-54404831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 29
               

               
Conread position:
               
218-668
               

               
Cow position:
               
chr5:57327552-57328011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 235
               

               
Conread position:
               
218-687
               

               
Cow position:
               
chr5:47871288-47870821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 216
               

               
Conread position:
               
218-696
               

               
Cow position:
               
chr5:6839315-6838837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 193
               

               
Conread position:
               
219-489
               

               
Cow position:
               
chr5:8994801-8994534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
125, 103
               

               
Conread position:
               
221-684
               

               
Cow position:
               
chr5:16025693-16025253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
223-543
               

               
Cow position:
               
chr5:35209702-35209390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
119, 7
               

               
Conread position:
               
223-626
               

               
Cow position:
               
chr5:1950291-1949890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
107, 24
               

               
Conread position:
               
223-626
               

               
Cow position:
               
chr5:40928204-40927827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
121, 43
               

               
Conread position:
               
224-557
               

               
Cow position:
               
chr5:56820490-56820165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 58
               

               
Conread position:
               
224-607
               

               
Cow position:
               
chr5:54086310-54086687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 23
               

               
Conread position:
               
225-408
               

               
Cow position:
               
chr5:56443047-56443239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
225-428
               

               
Cow position:
               
chr5:46104165-46103968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
225-430
               

               
Cow position:
               
chr5:54064550-54064756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
110, 99
               

               
Conread position:
               
225-432
               

               
Cow position:
               
chr5:27353465-27353257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
41, 37
               

               
Conread position:
               
225-432
               

               
Cow position:
               
chr5:41067794-41068003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
225-446
               

               
Cow position:
               
chr5:39710610-39710833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
225-459
               

               
Cow position:
               
chr5:27690288-27690055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
119, 105
               

               
Conread position:
               
225-459
               

               
Cow position:
               
chr5:35145123-35145351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
225-462
               

               
Cow position:
               
chr5:66831943-66831706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
118, 52
               

               
Conread position:
               
225-462
               

               
Cow position:
               
chr5:68480995-68481243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
225-465
               

               
Cow position:
               
chr5:26561923-26562168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
30, 154
               

               
Conread position:
               
225-503
               

               
Cow position:
               
chr5:27015462-27015726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
225-538
               

               
Cow position:
               
chr5:28926414-28926100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
225-553
               

               
Cow position:
               
chr5:61839959-61840283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 34
               

               
Conread position:
               
225-562
               

               
Cow position:
               
chr5:46122578-46122249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
117, 22
               

               
Conread position:
               
225-577
               

               
Cow position:
               
chr5:32697042-32696704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 78
               

               
Conread position:
               
225-580
               

               
Cow position:
               
chr5:65588483-65588821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
225-590
               

               
Cow position:
               
chr5:27172190-27171861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
225-595
               

               
Cow position:
               
chr5:75437126-75436751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 231
               

               
Conread position:
               
225-599
               

               
Cow position:
               
chr5:34463814-34463439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
225-602
               

               
Cow position:
               
chr5:3639743-3639353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
60, 272
               

               
Conread position:
               
225-606
               

               
Cow position:
               
chr5:56523945-56524322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 22
               

               
Conread position:
               
225-608
               

               
Cow position:
               
chr5:6683577-6683218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 71
               

               
Conread position:
               
225-611
               

               
Cow position:
               
chr5:67212149-67212513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 94
               

               
Conread position:
               
225-614
               

               
Cow position:
               
chr5:21040203-21039829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 111
               

               
Conread position:
               
225-617
               

               
Cow position:
               
chr5:4032218-4031827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 71
               

               
Conread position:
               
225-618
               

               
Cow position:
               
chr5:50821559-50821945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 70
               

               
Conread position:
               
225-624
               

               
Cow position:
               
chr5:27615285-27615678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
225-626
               

               
Cow position:
               
chr5:27419950-27419561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
225-626
               

               
Cow position:
               
chr5:40357099-40356690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 66
               

               
Conread position:
               
225-634
               

               
Cow position:
               
chr5:20783399-20783795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 22
               

               
Conread position:
               
225-637
               

               
Cow position:
               
chr5:42777535-42777926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
140, 114
               

               
Conread position:
               
225-638
               

               
Cow position:
               
chr5:64137022-64137436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 87
               

               
Conread position:
               
225-666
               

               
Cow position:
               
chr5:29353358-29352920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
225-669
               

               
Cow position:
               
chr5:17063323-17062864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 82
               

               
Conread position:
               
225-669
               

               
Cow position:
               
chr5:68604630-68605078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
117, 22
               

               
Conread position:
               
225-675
               

               
Cow position:
               
chr5:65776615-65776156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 232
               

               
Conread position:
               
225-676
               

               
Cow position:
               
chr5:41164859-41165304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 120
               

               
Conread position:
               
225-679
               

               
Cow position:
               
chr5:11229903-11229446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 218
               

               
Conread position:
               
225-679
               

               
Cow position:
               
chr5:36854983-36855430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 87
               

               
Conread position:
               
225-681
               

               
Cow position:
               
chr5:30253516-30253967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
225-684
               

               
Cow position:
               
chr5:3771617-3772072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 99
               

               
Conread position:
               
225-684
               

               
Cow position:
               
chr5:56070624-56071088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 30
               

               
Conread position:
               
225-684
               

               
Cow position:
               
chr5:66338855-66339303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 32
               

               
Conread position:
               
225-687
               

               
Cow position:
               
chr5:14904296-14903832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 22
               

               
Conread position:
               
225-687
               

               
Cow position:
               
chr5:74643890-74643451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 22
               

               
Conread position:
               
225-695
               

               
Cow position:
               
chr5:24996453-24995979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 45
               

               
Conread position:
               
225-695
               

               
Cow position:
               
chr5:26990164-26990613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 119
               

               
Conread position:
               
225-695
               

               
Cow position:
               
chr5:27154793-27155242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 74
               

               
Conread position:
               
225-696
               

               
Cow position:
               
chr5:22243014-22242532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 40
               

               
Conread position:
               
225-696
               

               
Cow position:
               
chr5:55176660-55177122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
225-697
               

               
Cow position:
               
chr5:36868516-36868981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 97
               

               
Conread position:
               
225-697
               

               
Cow position:
               
chr5:57074564-57074095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 193
               

               
Conread position:
               
226-442
               

               
Cow position:
               
chr5:57126787-57127000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
226-445
               

               
Cow position:
               
chr5:42747930-42748147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
226-483
               

               
Cow position:
               
chr5:58460633-58460372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
71, 230
               

               
Conread position:
               
226-500
               

               
Cow position:
               
chr5:19470411-19470148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
226-513
               

               
Cow position:
               
chr5:3627396-3627096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 237
               

               
Conread position:
               
226-571
               

               
Cow position:
               
chr5:38805572-38805232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
226-588
               

               
Cow position:
               
chr5:19813440-19813090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 31
               

               
Conread position:
               
226-611
               

               
Cow position:
               
chr5:44054266-44053901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 129
               

               
Conread position:
               
226-617
               

               
Cow position:
               
chr5:74858345-74858734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 110
               

               
Conread position:
               
226-618
               

               
Cow position:
               
chr5:46510096-46509704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 155
               

               
Conread position:
               
226-668
               

               
Cow position:
               
chr5:68718655-68719081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
226-680
               

               
Cow position:
               
chr5:48144019-48143564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
114, 204
               

               
Conread position:
               
226-697
               

               
Cow position:
               
chr5:16938236-16937794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 75
               

               
Conread position:
               
226-697
               

               
Cow position:
               
chr5:23140801-23140343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 96
               

               
Conread position:
               
227-438
               

               
Cow position:
               
chr5:46294892-46294681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
112, 27
               

               
Conread position:
               
227-445
               

               
Cow position:
               
chr5:32963856-32963641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 20
               

               
Conread position:
               
227-446
               

               
Cow position:
               
chr5:57113753-57113962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
213, 115
               

               
Conread position:
               
227-506
               

               
Cow position:
               
chr5:1766572-1766300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
227-538
               

               
Cow position:
               
chr5:64823540-64823228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 173
               

               
Conread position:
               
227-582
               

               
Cow position:
               
chr5:34183990-34184347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
18, 245
               

               
Conread position:
               
227-599
               

               
Cow position:
               
chr5:65887241-65886870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
117, 20
               

               
Conread position:
               
227-601
               

               
Cow position:
               
chr5:15426301-15426681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 30
               

               
Conread position:
               
227-605
               

               
Cow position:
               
chr5:74015713-74016087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 20
               

               
Conread position:
               
227-607
               

               
Cow position:
               
chr5:8821239-8820864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 161
               

               
Conread position:
               
227-626
               

               
Cow position:
               
chr5:29903749-29903356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 54
               

               
Conread position:
               
227-666
               

               
Cow position:
               
chr5:37645846-37646287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 198
               

               
Conread position:
               
227-693
               

               
Cow position:
               
chr5:72895465-72895925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 85
               

               
Conread position:
               
227-697
               

               
Cow position:
               
chr5:16894003-16893537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 165
               

               
Conread position:
               
227-697
               

               
Cow position:
               
chr5:17999723-17999252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 110
               

               
Conread position:
               
228-425
               

               
Cow position:
               
chr5:12672253-12672060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
115, 83
               

               
Conread position:
               
228-467
               

               
Cow position:
               
chr5:18090501-18090739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
139, 94
               

               
Conread position:
               
228-611
               

               
Cow position:
               
chr5:54311107-54311489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 48
               

               
Conread position:
               
228-626
               

               
Cow position:
               
chr5:27103014-27102626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 90
               

               
Conread position:
               
228-629
               

               
Cow position:
               
chr5:7723446-7723834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 19
               

               
Conread position:
               
228-669
               

               
Cow position:
               
chr5:55233005-55232608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
120, 15
               

               
Conread position:
               
228-684
               

               
Cow position:
               
chr5:55068490-55068931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
229-681
               

               
Cow position:
               
chr5:25495563-25495124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 69
               

               
Conread position:
               
229-684
               

               
Cow position:
               
chr5:5257522-5257057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 136
               

               
Conread position:
               
229-684
               

               
Cow position:
               
chr5:44848242-44847795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 78
               

               
Conread position:
               
230-412
               

               
Cow position:
               
chr5:14415549-14415736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
107, 17
               

               
Conread position:
               
230-459
               

               
Cow position:
               
chr5:37425519-37425744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
108, 17
               

               
Conread position:
               
230-522
               

               
Cow position:
               
chr5:21964064-21964354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
114, 7
               

               
Conread position:
               
230-604
               

               
Cow position:
               
chr5:72564538-72564910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 17
               

               
Conread position:
               
230-626
               

               
Cow position:
               
chr5:27411614-27411233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
231-467
               

               
Cow position:
               
chr5:5848410-5848173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
109, 78
               

               
Conread position:
               
231-680
               

               
Cow position:
               
chr5:32394377-32394828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 7
               

               
Conread position:
               
232-681
               

               
Cow position:
               
chr5:56028752-56028318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 15
               

               
Conread position:
               
233-415
               

               
Cow position:
               
chr5:37366676-37366861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
233-466
               

               
Cow position:
               
chr5:54111697-54111935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
107, 195
               

               
Conread position:
               
233-615
               

               
Cow position:
               
chr5:15722275-15721919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 24
               

               
Conread position:
               
233-647
               

               
Cow position:
               
chr5:65752635-65753048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 89
               

               
Conread position:
               
234-456
               

               
Cow position:
               
chr5:31434045-31434261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
234-524
               

               
Cow position:
               
chr5:72287131-72286848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
129, 13
               

               
Conread position:
               
234-685
               

               
Cow position:
               
chr5:2309785-2309327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 193
               

               
Conread position:
               
234-695
               

               
Cow position:
               
chr5:11427463-11426995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 209
               

               
Conread position:
               
236-445
               

               
Cow position:
               
chr5:45036804-45037011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
236-687
               

               
Cow position:
               
chr5:7044929-7044473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 31
               

               
Conread position:
               
237-445
               

               
Cow position:
               
chr5:57271483-57271275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
14, 85
               

               
Conread position:
               
237-610
               

               
Cow position:
               
chr5:41713099-41713450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 33
               

               
Conread position:
               
241-610
               

               
Cow position:
               
chr5:64758975-64758615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 10
               

               
Conread position:
               
243-416
               

               
Cow position:
               
chr5:47547928-47547756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
101, 26
               

               
Conread position:
               
243-438
               

               
Cow position:
               
chr5:71158474-71158278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
106, 7
               

               
Conread position:
               
243-489
               

               
Cow position:
               
chr5:49820931-49821171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
243-591
               

               
Cow position:
               
chr5:45803849-45804193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 63
               

               
Conread position:
               
243-680
               

               
Cow position:
               
chr5:35969331-35969766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 102
               

               
Conread position:
               
243-693
               

               
Cow position:
               
chr5:8024403-8023976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
243-693
               

               
Cow position:
               
chr5:35235920-35235448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 93
               

               
Conread position:
               
244-412
               

               
Cow position:
               
chr5:15462504-15462672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
122, 28
               

               
Conread position:
               
244-423
               

               
Cow position:
               
chr5:43395348-43395172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
126, 45
               

               
Conread position:
               
244-452
               

               
Cow position:
               
chr5:72891959-72891760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
144, 59
               

               
Conread position:
               
244-540
               

               
Cow position:
               
chr5:63185464-63185172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
100, 152
               

               
Conread position:
               
244-562
               

               
Cow position:
               
chr5:40039981-40039662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 200
               

               
Conread position:
               
244-594
               

               
Cow position:
               
chr5:62142460-62142812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 78
               

               
Conread position:
               
244-617
               

               
Cow position:
               
chr5:7755763-7755411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
244-688
               

               
Cow position:
               
chr5:26262884-26262450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 44
               

               
Conread position:
               
245-597
               

               
Cow position:
               
chr5:6896336-6895988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
151, 110
               

               
Conread position:
               
246-680
               

               
Cow position:
               
chr5:44049494-44049926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
96, 66
               

               
Conread position:
               
247-446
               

               
Cow position:
               
chr5:62027154-62026956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 75
               

               
Conread position:
               
247-506
               

               
Cow position:
               
chr5:7140312-7140057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
128, 80
               

               
Conread position:
               
247-520
               

               
Cow position:
               
chr5:32378662-32378909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
248, 22
               

               
Conread position:
               
247-552
               

               
Cow position:
               
chr5:29212741-29213032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
182, 66
               

               
Conread position:
               
247-602
               

               
Cow position:
               
chr5:29771307-29771672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 136
               

               
Conread position:
               
247-608
               

               
Cow position:
               
chr5:39258330-39258656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
95, 24
               

               
Conread position:
               
247-612
               

               
Cow position:
               
chr5:37377668-37378008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 64
               

               
Conread position:
               
247-628
               

               
Cow position:
               
chr5:6504087-6503711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 81
               

               
Conread position:
               
247-683
               

               
Cow position:
               
chr5:5201709-5202134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
247-695
               

               
Cow position:
               
chr5:3242681-3242254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
247-697
               

               
Cow position:
               
chr5:51053855-51053404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 71
               

               
Conread position:
               
248-441
               

               
Cow position:
               
chr5:72845979-72845794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
128, 57
               

               
Conread position:
               
248-603
               

               
Cow position:
               
chr5:57736908-57737244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 64
               

               
Conread position:
               
248-697
               

               
Cow position:
               
chr5:1688319-1687872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
148, 90
               

               
Conread position:
               
250-469
               

               
Cow position:
               
chr5:35449049-35449261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 72
               

               
Conread position:
               
251-426
               

               
Cow position:
               
chr5:19078912-19079085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
117, 57
               

               
Conread position:
               
251-618
               

               
Cow position:
               
chr5:23169022-23168666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 63
               

               
Conread position:
               
251-671
               

               
Cow position:
               
chr5:47696654-47696243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
252-697
               

               
Cow position:
               
chr5:45409123-45409570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
254-609
               

               
Cow position:
               
chr5:56518410-56518072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
257-504
               

               
Cow position:
               
chr5:24485623-24485387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
238, 52
               

               
Conread position:
               
257-578
               

               
Cow position:
               
chr5:3668701-3669019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 19
               

               
Conread position:
               
257-605
               

               
Cow position:
               
chr5:69731320-69731647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 55
               

               
Conread position:
               
258-423
               

               
Cow position:
               
chr5:46499102-46499265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
107, 77
               

               
Conread position:
               
258-671
               

               
Cow position:
               
chr5:50599861-50600263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
259-446
               

               
Cow position:
               
chr5:34678688-34678884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 124
               

               
Conread position:
               
259-641
               

               
Cow position:
               
chr5:52040515-52040140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
89, 73
               

               
Conread position:
               
259-676
               

               
Cow position:
               
chr5:50943349-50942938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 188
               

               
Conread position:
               
259-684
               

               
Cow position:
               
chr5:34561813-34562239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 279
               

               
Conread position:
               
259-697
               

               
Cow position:
               
chr5:44447082-44446631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 212
               

               
Conread position:
               
260-446
               

               
Cow position:
               
chr5:53146080-53145894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
260-459
               

               
Cow position:
               
chr5:55821172-55821379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
260-550
               

               
Cow position:
               
chr5:8163018-8162726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
52, 83
               

               
Conread position:
               
265-426
               

               
Cow position:
               
chr5:50870352-50870517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
265-445
               

               
Cow position:
               
chr5:74019960-74019781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
265-585
               

               
Cow position:
               
chr5:48010036-48009732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 70
               

               
Conread position:
               
265-604
               

               
Cow position:
               
chr5:22643407-22643086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 54
               

               
Conread position:
               
265-641
               

               
Cow position:
               
chr5:69461145-69461516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
265-649
               

               
Cow position:
               
chr5:4220791-4221167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 180
               

               
Conread position:
               
265-687
               

               
Cow position:
               
chr5:74610881-74610467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
375, 103
               

               
Conread position:
               
265-695
               

               
Cow position:
               
chr5:4322221-4322653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
79, 106
               

               
Conread position:
               
265-697
               

               
Cow position:
               
chr5:17371890-17371451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
266-519
               

               
Cow position:
               
chr5:1678211-1678454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
103, 54
               

               
Conread position:
               
267-610
               

               
Cow position:
               
chr5:57575578-57575925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 175
               

               
Conread position:
               
268-412
               

               
Cow position:
               
chr5:75828922-75828779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
45, 77
               

               
Conread position:
               
268-487
               

               
Cow position:
               
chr5:17644842-17644625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
268-684
               

               
Cow position:
               
chr5:29061111-29060709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
92, 135
               

               
Conread position:
               
269-693
               

               
Cow position:
               
chr5:52667844-52668280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
270-530
               

               
Cow position:
               
chr5:6670382-6670120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 135
               

               
Conread position:
               
270-568
               

               
Cow position:
               
chr5:36486301-36486603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 161
               

               
Conread position:
               
270-618
               

               
Cow position:
               
chr5:61810608-61810931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
270-684
               

               
Cow position:
               
chr5:46512951-46512538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 181
               

               
Conread position:
               
271-618
               

               
Cow position:
               
chr5:37808848-37808504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 53
               

               
Conread position:
               
271-680
               

               
Cow position:
               
chr5:34624785-34625174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 100
               

               
Conread position:
               
272-427
               

               
Cow position:
               
chr5:57576031-57576188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
272-571
               

               
Cow position:
               
chr5:55928760-55929057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
63, 73
               

               
Conread position:
               
272-603
               

               
Cow position:
               
chr5:47323268-47323607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 189
               

               
Conread position:
               
272-608
               

               
Cow position:
               
chr5:17768326-17768000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
273-458
               

               
Cow position:
               
chr5:39242371-39242196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
273-697
               

               
Cow position:
               
chr5:71722879-71723323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 272
               

               
Conread position:
               
274-461
               

               
Cow position:
               
chr5:34167780-34167966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
123, 56
               

               
Conread position:
               
274-581
               

               
Cow position:
               
chr5:67540398-67540078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 179
               

               
Conread position:
               
276-673
               

               
Cow position:
               
chr5:53946710-53947118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
276-674
               

               
Cow position:
               
chr5:65136105-65136477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
276-687
               

               
Cow position:
               
chr5:44028480-44028075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 41
               

               
Conread position:
               
277-523
               

               
Cow position:
               
chr5:28957794-28957548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
67, 140
               

               
Conread position:
               
277-591
               

               
Cow position:
               
chr5:6286604-6286300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 48
               

               
Conread position:
               
278-624
               

               
Cow position:
               
chr5:51935006-51935355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
67, 178
               

               
Conread position:
               
279-557
               

               
Cow position:
               
chr5:69520715-69520990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
279-626
               

               
Cow position:
               
chr5:62638730-62639072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
279-685
               

               
Cow position:
               
chr5:45472090-45472506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 56
               

               
Conread position:
               
279-694
               

               
Cow position:
               
chr5:19778759-19778325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
71, 172
               

               
Conread position:
               
280-424
               

               
Cow position:
               
chr5:45026092-45025949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 42
               

               
Conread position:
               
280-641
               

               
Cow position:
               
chr5:29980160-29979783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
60, 51
               

               
Conread position:
               
281-423
               

               
Cow position:
               
chr5:33937046-33937188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 92
               

               
Conread position:
               
281-680
               

               
Cow position:
               
chr5:3549951-3549579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
282-597
               

               
Cow position:
               
chr5:41452839-41452533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 99
               

               
Conread position:
               
282-684
               

               
Cow position:
               
chr5:59115208-59115624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 172
               

               
Conread position:
               
284-683
               

               
Cow position:
               
chr5:55955735-55956139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 81
               

               
Conread position:
               
285-434
               

               
Cow position:
               
chr5:61875347-61875205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
285-607
               

               
Cow position:
               
chr5:56317125-56317438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 110
               

               
Conread position:
               
285-684
               

               
Cow position:
               
chr5:30092799-30092397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
61, 30
               

               
Conread position:
               
285-684
               

               
Cow position:
               
chr5:41010166-41009780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 117
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr5:41486906-41486713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
287-634
               

               
Cow position:
               
chr5:30950087-30949739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 134
               

               
Conread position:
               
288-458
               

               
Cow position:
               
chr5:24616289-24616111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
288-477
               

               
Cow position:
               
chr5:31223083-31222896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 146
               

               
Conread position:
               
288-680
               

               
Cow position:
               
chr5:30629324-30628927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
289-620
               

               
Cow position:
               
chr5:23529442-23529119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
55, 72
               

               
Conread position:
               
289-671
               

               
Cow position:
               
chr5:74580627-74581003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
56, 109
               

               
Conread position:
               
289-681
               

               
Cow position:
               
chr5:65967897-65967510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 126
               

               
Conread position:
               
289-683
               

               
Cow position:
               
chr5:66972257-66972659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 170
               

               
Conread position:
               
290-677
               

               
Cow position:
               
chr5:11540208-11539829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 22
               

               
Conread position:
               
291-676
               

               
Cow position:
               
chr5:16214524-16214903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
204, 44
               

               
Conread position:
               
291-677
               

               
Cow position:
               
chr5:54060110-54060494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 136
               

               
Conread position:
               
292-530
               

               
Cow position:
               
chr5:21920205-21920453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 226
               

               
Conread position:
               
293-458
               

               
Cow position:
               
chr5:44849889-44849726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 52
               

               
Conread position:
               
294-445
               

               
Cow position:
               
chr5:71579013-71579165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
294-608
               

               
Cow position:
               
chr5:46426011-46425706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
294-668
               

               
Cow position:
               
chr5:45397418-45397779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
296-680
               

               
Cow position:
               
chr5:3582414-3582781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
298-684
               

               
Cow position:
               
chr5:42050391-42050774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 121
               

               
Conread position:
               
299-669
               

               
Cow position:
               
chr5:12673620-12673265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
300-697
               

               
Cow position:
               
chr5:35247265-35246863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
301-442
               

               
Cow position:
               
chr5:31020286-31020151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
302-626
               

               
Cow position:
               
chr5:37068739-37069049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
43, 69
               

               
Conread position:
               
303-506
               

               
Cow position:
               
chr5:51801126-51800923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
8, 138
               

               
Conread position:
               
303-697
               

               
Cow position:
               
chr5:19335944-19335531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
29, 6
               

               
Conread position:
               
304-597
               

               
Cow position:
               
chr5:39874972-39875263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
304-684
               

               
Cow position:
               
chr5:35459445-35459064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 65
               

               
Conread position:
               
306-618
               

               
Cow position:
               
chr5:16206308-16205995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 147
               

               
Conread position:
               
307-421
               

               
Cow position:
               
chr5:23866312-23866197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
307-550
               

               
Cow position:
               
chr5:36255411-36255165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
307-608
               

               
Cow position:
               
chr5:63865644-63865958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
37, 144
               

               
Conread position:
               
307-696
               

               
Cow position:
               
chr5:66581812-66582210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
35, 137
               

               
Conread position:
               
309-412
               

               
Cow position:
               
chr5:54750687-54750794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
309-591
               

               
Cow position:
               
chr5:72951690-72951977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 142
               

               
Conread position:
               
309-692
               

               
Cow position:
               
chr5:7057550-7057158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
5, 10
               

               
Conread position:
               
311-571
               

               
Cow position:
               
chr5:65883923-65883659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 148
               

               
Conread position:
               
312-481
               

               
Cow position:
               
chr5:50972384-50972553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
312-616
               

               
Cow position:
               
chr5:20422325-20422035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 30
               

               
Conread position:
               
313-609
               

               
Cow position:
               
chr5:56877343-56877633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
313-680
               

               
Cow position:
               
chr5:70952021-70951666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 136
               

               
Conread position:
               
317-694
               

               
Cow position:
               
chr5:64027149-64026770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 126
               

               
Conread position:
               
318-684
               

               
Cow position:
               
chr5:57101916-57101567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 94
               

               
Conread position:
               
320-695
               

               
Cow position:
               
chr5:50857799-50858177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
321-679
               

               
Cow position:
               
chr5:29844142-29844508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
19, 107
               

               
Conread position:
               
321-687
               

               
Cow position:
               
chr5:73168135-73167781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
322-446
               

               
Cow position:
               
chr5:19294622-19294498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
322-489
               

               
Cow position:
               
chr5:7921536-7921373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
22, 128
               

               
Conread position:
               
322-610
               

               
Cow position:
               
chr5:45574485-45574772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
322-647
               

               
Cow position:
               
chr5:14473549-14473212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
322-695
               

               
Cow position:
               
chr5:29097223-29097606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
22, 114
               

               
Conread position:
               
323-494
               

               
Cow position:
               
chr5:38647224-38647391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
17, 118
               

               
Conread position:
               
324-693
               

               
Cow position:
               
chr5:57768113-57767748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
324-697
               

               
Cow position:
               
chr5:991332-991715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 105
               

               
Conread position:
               
324-697
               

               
Cow position:
               
chr5:18288995-18289361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 127
               

               
Conread position:
               
325-694
               

               
Cow position:
               
chr5:22666960-22667310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
15, 69
               

               
Conread position:
               
326-597
               

               
Cow position:
               
chr5:76366419-76366156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
326-610
               

               
Cow position:
               
chr5:45273633-45273350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
18, 117
               

               
Conread position:
               
326-617
               

               
Cow position:
               
chr5:54768042-54767750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 124
               

               
Conread position:
               
327-618
               

               
Cow position:
               
chr5:63427137-63426842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 143
               

               
Conread position:
               
327-680
               

               
Cow position:
               
chr5:64140399-64140764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
330-614
               

               
Cow position:
               
chr5:60599308-60599049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
330-680
               

               
Cow position:
               
chr5:33833923-33834266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
165, 16
               

               
Conread position:
               
330-697
               

               
Cow position:
               
chr5:49474670-49474313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 57
               

               
Conread position:
               
333-641
               

               
Cow position:
               
chr5:64168362-64168056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
333-647
               

               
Cow position:
               
chr5:3002793-3003094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
338-684
               

               
Cow position:
               
chr5:60016050-60016393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 88
               

               
Conread position:
               
341-605
               

               
Cow position:
               
chr5:56680133-56680405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
23, 113
               

               
Conread position:
               
341-610
               

               
Cow position:
               
chr5:49440986-49440724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 67
               

               
Conread position:
               
341-615
               

               
Cow position:
               
chr5:53710808-53710532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
29, 104
               

               
Conread position:
               
341-617
               

               
Cow position:
               
chr5:64592206-64591936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 7
               

               
Conread position:
               
341-618
               

               
Cow position:
               
chr5:44726440-44726175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 103
               

               
Conread position:
               
341-694
               

               
Cow position:
               
chr5:12901801-12902159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 102
               

               
Conread position:
               
341-694
               

               
Cow position:
               
chr5:33560848-33560499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
342-569
               

               
Cow position:
               
chr5:57561404-57561634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
342-596
               

               
Cow position:
               
chr5:4927680-4927427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
51, 84
               

               
Conread position:
               
342-621
               

               
Cow position:
               
chr5:13717684-13717405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 106
               

               
Conread position:
               
343-609
               

               
Cow position:
               
chr5:7697893-7698151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 103
               

               
Conread position:
               
343-610
               

               
Cow position:
               
chr5:58446691-58446960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 107
               

               
Conread position:
               
343-625
               

               
Cow position:
               
chr5:19523785-19524067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
26, 84
               

               
Conread position:
               
343-647
               

               
Cow position:
               
chr5:6891130-6890832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
250, 153
               

               
Conread position:
               
343-684
               

               
Cow position:
               
chr5:42670968-42670643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
153, 46
               

               
Conread position:
               
344-503
               

               
Cow position:
               
chr5:55849854-55849698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
150, 92
               

               
Conread position:
               
344-648
               

               
Cow position:
               
chr5:57419904-57419607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
345-507
               

               
Cow position:
               
chr5:60448105-60448266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
25, 103
               

               
Conread position:
               
345-611
               

               
Cow position:
               
chr5:23678814-23678550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 175
               

               
Conread position:
               
345-639
               

               
Cow position:
               
chr5:60183691-60183979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 94
               

               
Conread position:
               
346-609
               

               
Cow position:
               
chr5:35125945-35126206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
84, 9
               

               
Conread position:
               
346-685
               

               
Cow position:
               
chr5:14921039-14920696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 77
               

               
Conread position:
               
347-694
               

               
Cow position:
               
chr5:12434427-12434773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 55
               

               
Conread position:
               
348-578
               

               
Cow position:
               
chr5:56635793-56636015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
348-695
               

               
Cow position:
               
chr5:43371305-43370950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
349-615
               

               
Cow position:
               
chr5:41293974-41294237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
350-633
               

               
Cow position:
               
chr5:62378686-62378956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 89
               

               
Conread position:
               
351-608
               

               
Cow position:
               
chr5:54375611-54375352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 103
               

               
Conread position:
               
351-684
               

               
Cow position:
               
chr5:12557396-12557057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 187
               

               
Conread position:
               
352-697
               

               
Cow position:
               
chr5:36039107-36038763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 52
               

               
Conread position:
               
354-681
               

               
Cow position:
               
chr5:36650448-36650782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 86
               

               
Conread position:
               
356-621
               

               
Cow position:
               
chr5:55019194-55019458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
357-669
               

               
Cow position:
               
chr5:17555126-17554820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 14
               

               
Conread position:
               
358-581
               

               
Cow position:
               
chr5:23357238-23357452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 81
               

               
Conread position:
               
358-618
               

               
Cow position:
               
chr5:59873187-59872918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
358-679
               

               
Cow position:
               
chr5:30232802-30233135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 96
               

               
Conread position:
               
358-684
               

               
Cow position:
               
chr5:46681812-46681491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
359-696
               

               
Cow position:
               
chr5:39815594-39815259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
234, 97
               

               
Conread position:
               
363-602
               

               
Cow position:
               
chr5:35976429-35976654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
134, 46
               

               
Conread position:
               
363-649
               

               
Cow position:
               
chr5:1087288-1087009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
134, 36
               

               
Conread position:
               
363-668
               

               
Cow position:
               
chr5:66551994-66551678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
12, 67
               

               
Conread position:
               
363-680
               

               
Cow position:
               
chr5:71015972-71015659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 62
               

               
Conread position:
               
363-693
               

               
Cow position:
               
chr5:59384782-59384446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
67, 86
               

               
Conread position:
               
363-694
               

               
Cow position:
               
chr5:50575693-50576005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
132, 81
               

               
Conread position:
               
365-676
               

               
Cow position:
               
chr5:30805077-30805371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
15, 61
               

               
Conread position:
               
367-697
               

               
Cow position:
               
chr5:65140199-65140542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
39, 143
               

               
Conread position:
               
368-676
               

               
Cow position:
               
chr5:41884849-41885136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
46, 80
               

               
Conread position:
               
368-684
               

               
Cow position:
               
chr5:57527005-57526695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
127, 79
               

               
Conread position:
               
370-691
               

               
Cow position:
               
chr5:43402815-43403146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 165
               

               
Conread position:
               
375-680
               

               
Cow position:
               
chr5:61914490-61914797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
66, 83
               

               
Conread position:
               
375-683
               

               
Cow position:
               
chr5:50713851-50713521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
72, 87
               

               
Conread position:
               
375-697
               

               
Cow position:
               
chr5:70270785-70271111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
376-611
               

               
Cow position:
               
chr5:69636156-69636377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
118, 63
               

               
Conread position:
               
376-684
               

               
Cow position:
               
chr5:19752226-19752531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
377-632
               

               
Cow position:
               
chr5:37893255-37893514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 47
               

               
Conread position:
               
377-680
               

               
Cow position:
               
chr5:65343534-65343855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 167
               

               
Conread position:
               
378-693
               

               
Cow position:
               
chr5:57756108-57755795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 76
               

               
Conread position:
               
380-668
               

               
Cow position:
               
chr5:57994939-57994666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
263, 9
               

               
Conread position:
               
383-668
               

               
Cow position:
               
chr5:63234898-63234609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 73
               

               
Conread position:
               
384-696
               

               
Cow position:
               
chr5:6439104-6438786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
385-615
               

               
Cow position:
               
chr5:41981300-41981525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 7
               

               
Conread position:
               
385-694
               

               
Cow position:
               
chr5:54750740-54751049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
60, 46
               

               
Conread position:
               
387-688
               

               
Cow position:
               
chr5:11769200-11769506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
388-585
               

               
Cow position:
               
chr5:26150488-26150294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
58, 53
               

               
Conread position:
               
389-591
               

               
Cow position:
               
chr5:1461021-1461222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 78
               

               
Conread position:
               
389-680
               

               
Cow position:
               
chr5:43604077-43604365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
106, 47
               

               
Conread position:
               
391-694
               

               
Cow position:
               
chr5:7012912-7012612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
251, 57
               

               
Conread position:
               
392-607
               

               
Cow position:
               
chr5:63150230-63150019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 20
               

               
Conread position:
               
392-696
               

               
Cow position:
               
chr5:41935720-41935414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
392-697
               

               
Cow position:
               
chr5:30247587-30247284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 52
               

               
Conread position:
               
392-697
               

               
Cow position:
               
chr5:59627037-59626726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 141
               

               
Conread position:
               
394-618
               

               
Cow position:
               
chr5:45420195-45419977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
394-695
               

               
Cow position:
               
chr5:20995156-20994851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
101, 148
               

               
Conread position:
               
395-617
               

               
Cow position:
               
chr5:63059009-63059220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
396-696
               

               
Cow position:
               
chr5:63627584-63627299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
101, 29
               

               
Conread position:
               
397-684
               

               
Cow position:
               
chr5:61455787-61456077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
98, 120
               

               
Conread position:
               
397-696
               

               
Cow position:
               
chr5:63240918-63241223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
100, 56
               

               
Conread position:
               
398-618
               

               
Cow position:
               
chr5:40241985-40242204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
55, 138
               

               
Conread position:
               
399-620
               

               
Cow position:
               
chr5:56339074-56338859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
399-639
               

               
Cow position:
               
chr5:55796017-55795791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
402-620
               

               
Cow position:
               
chr5:57156367-57156152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
402-694
               

               
Cow position:
               
chr5:24136660-24136974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
93, 63
               

               
Conread position:
               
405-697
               

               
Cow position:
               
chr5:15470882-15471160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
90, 43
               

               
Conread position:
               
406-615
               

               
Cow position:
               
chr5:56211852-56212063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
406-693
               

               
Cow position:
               
chr5:67118369-67118644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
410-597
               

               
Cow position:
               
chr5:56517057-56517243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
87, 43
               

               
Conread position:
               
410-697
               

               
Cow position:
               
chr5:52001666-52001379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
85, 37
               

               
Conread position:
               
411-666
               

               
Cow position:
               
chr5:72006537-72006285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
86, 124
               

               
Conread position:
               
414-646
               

               
Cow position:
               
chr5:17602242-17602018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
414-679
               

               
Cow position:
               
chr5:69099677-69099944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
83, 42
               

               
Conread position:
               
414-685
               

               
Cow position:
               
chr5:49342090-49341804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
415-617
               

               
Cow position:
               
chr5:35982781-35982575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
416-608
               

               
Cow position:
               
chr5:71724261-71724449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
416-617
               

               
Cow position:
               
chr5:61102675-61102875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
89, 33
               

               
Conread position:
               
416-618
               

               
Cow position:
               
chr5:52083297-52083503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
416-684
               

               
Cow position:
               
chr5:57101565-57101297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
416-685
               

               
Cow position:
               
chr5:20288303-20288027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
418-647
               

               
Cow position:
               
chr5:66466281-66466502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
225, 31
               

               
Conread position:
               
418-697
               

               
Cow position:
               
chr5:68537706-68537423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
15, 100
               

               
Conread position:
               
420-618
               

               
Cow position:
               
chr5:22795178-22795376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
420-685
               

               
Cow position:
               
chr5:57686776-57686517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 116
               

               
Conread position:
               
420-695
               

               
Cow position:
               
chr5:51011956-51012243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
24, 120
               

               
Conread position:
               
420-697
               

               
Cow position:
               
chr5:50101414-50101134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
421-659
               

               
Cow position:
               
chr5:17605174-17604936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
28, 118
               

               
Conread position:
               
423-680
               

               
Cow position:
               
chr5:8736322-8736051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
423-684
               

               
Cow position:
               
chr5:26549174-26548912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
427-611
               

               
Cow position:
               
chr5:57230368-57230184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
427-621
               

               
Cow position:
               
chr5:61875514-61875700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
430-588
               

               
Cow position:
               
chr5:45574393-45574235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
65, 105
               

               
Conread position:
               
430-648
               

               
Cow position:
               
chr5:49501850-49501629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
65, 14
               

               
Conread position:
               
432-591
               

               
Cow position:
               
chr5:60188966-60189126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 23
               

               
Conread position:
               
433-617
               

               
Cow position:
               
chr5:58555112-58555296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
433-681
               

               
Cow position:
               
chr5:45187142-45186888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
441-695
               

               
Cow position:
               
chr5:56222561-56222295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
445-680
               

               
Cow position:
               
chr5:56613579-56613337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
5, 92
               

               
Conread position:
               
447-617
               

               
Cow position:
               
chr5:24069379-24069546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
448-609
               

               
Cow position:
               
chr5:9170591-9170433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 85
               

               
Conread position:
               
450-610
               

               
Cow position:
               
chr5:56334516-56334360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 73
               

               
Conread position:
               
450-681
               

               
Cow position:
               
chr5:17104845-17105072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
450-684
               

               
Cow position:
               
chr5:39035772-39036012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
47, 85
               

               
Conread position:
               
454-676
               

               
Cow position:
               
chr5:4267666-4267882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 82
               

               
Conread position:
               
454-694
               

               
Cow position:
               
chr5:34915057-34914812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
44, 81
               

               
Conread position:
               
454-696
               

               
Cow position:
               
chr5:50824587-50824827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
9, 82
               

               
Conread position:
               
455-606
               

               
Cow position:
               
chr5:45126648-45126800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 80
               

               
Conread position:
               
455-618
               

               
Cow position:
               
chr5:51490246-51490087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
145, 11
               

               
Conread position:
               
456-615
               

               
Cow position:
               
chr5:9369272-9369114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
456-618
               

               
Cow position:
               
chr5:55129341-55129503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
456-641
               

               
Cow position:
               
chr5:16939597-16939411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
18, 80
               

               
Conread position:
               
456-669
               

               
Cow position:
               
chr5:65679972-65679767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
456-676
               

               
Cow position:
               
chr5:69383253-69383473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
41, 79
               

               
Conread position:
               
456-680
               

               
Cow position:
               
chr5:46541057-46540834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
41, 69
               

               
Conread position:
               
456-680
               

               
Cow position:
               
chr5:60515030-60514799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
456-684
               

               
Cow position:
               
chr5:30561930-30562158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 80
               

               
Conread position:
               
456-691
               

               
Cow position:
               
chr5:2469209-2468977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
456-694
               

               
Cow position:
               
chr5:67634519-67634270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
456-696
               

               
Cow position:
               
chr5:6520009-6520248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
456-696
               

               
Cow position:
               
chr5:15364267-15364514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 80
               

               
Conread position:
               
456-697
               

               
Cow position:
               
chr5:2827372-2827620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
457-601
               

               
Cow position:
               
chr5:9233990-9233845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
457-676
               

               
Cow position:
               
chr5:60523732-60523949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
457-684
               

               
Cow position:
               
chr5:33273693-33273930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
5, 71
               

               
Conread position:
               
457-697
               

               
Cow position:
               
chr5:52852970-52853212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
458-670
               

               
Cow position:
               
chr5:52137935-52138154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 79
               

               
Conread position:
               
458-675
               

               
Cow position:
               
chr5:72045674-72045456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
458-680
               

               
Cow position:
               
chr5:17566438-17566217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
135, 77
               

               
Conread position:
               
458-691
               

               
Cow position:
               
chr5:44163369-44163135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
458-697
               

               
Cow position:
               
chr5:61049332-61049577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
460-588
               

               
Cow position:
               
chr5:26253171-26253043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
460-679
               

               
Cow position:
               
chr5:73253413-73253630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
460-695
               

               
Cow position:
               
chr5:59627102-59627332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
460-697
               

               
Cow position:
               
chr5:12299913-12300153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
461-680
               

               
Cow position:
               
chr5:52211683-52211465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 46
               

               
Conread position:
               
465-586
               

               
Cow position:
               
chr5:12169761-12169641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
465-686
               

               
Cow position:
               
chr5:51298705-51298484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
466-696
               

               
Cow position:
               
chr5:2240981-2240747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 35
               

               
Conread position:
               
466-696
               

               
Cow position:
               
chr5:29148900-29149143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr5:18062310-18062087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
467-680
               

               
Cow position:
               
chr5:60948142-60948358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 58
               

               
Conread position:
               
467-696
               

               
Cow position:
               
chr5:5016438-5016670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
467-697
               

               
Cow position:
               
chr5:26497668-26497442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 68
               

               
Conread position:
               
468-611
               

               
Cow position:
               
chr5:75228189-75228046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
471-695
               

               
Cow position:
               
chr5:7177164-7177395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
24, 65
               

               
Conread position:
               
473-610
               

               
Cow position:
               
chr5:35647358-35647495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
473-648
               

               
Cow position:
               
chr5:46704284-46704111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
473-664
               

               
Cow position:
               
chr5:38168909-38169102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
473-675
               

               
Cow position:
               
chr5:56860462-56860664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
473-684
               

               
Cow position:
               
chr5:50871828-50872042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
473-692
               

               
Cow position:
               
chr5:65552696-65552483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
473-693
               

               
Cow position:
               
chr5:26147606-26147827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
474-666
               

               
Cow position:
               
chr5:5847829-5847632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
128, 60
               

               
Conread position:
               
474-683
               

               
Cow position:
               
chr5:26167437-26167648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
476-680
               

               
Cow position:
               
chr5:54312619-54312825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
476-697
               

               
Cow position:
               
chr5:55965876-55965649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
478-620
               

               
Cow position:
               
chr5:42623158-42623018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
479-681
               

               
Cow position:
               
chr5:59335790-59336000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 57
               

               
Conread position:
               
480-680
               

               
Cow position:
               
chr5:43846366-43846152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
480-684
               

               
Cow position:
               
chr5:75760252-75760038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
481-692
               

               
Cow position:
               
chr5:35190133-35190342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
481-696
               

               
Cow position:
               
chr5:37842256-37842037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
481-697
               

               
Cow position:
               
chr5:51289568-51289361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
481-697
               

               
Cow position:
               
chr5:60596108-60595870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
483-615
               

               
Cow position:
               
chr5:51490577-51490445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
484-676
               

               
Cow position:
               
chr5:694890-695076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
484-684
               

               
Cow position:
               
chr5:11303139-11303334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
157, 12
               

               
Conread position:
               
484-697
               

               
Cow position:
               
chr5:34288224-34288011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
485-697
               

               
Cow position:
               
chr5:49821455-49821677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
10, 50
               

               
Conread position:
               
486-669
               

               
Cow position:
               
chr5:16668725-16668908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
486-683
               

               
Cow position:
               
chr5:6086315-6086112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
486-694
               

               
Cow position:
               
chr5:36822915-36823110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
491-696
               

               
Cow position:
               
chr5:32975791-32976007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
492-641
               

               
Cow position:
               
chr5:32935779-32935926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
492-680
               

               
Cow position:
               
chr5:57497389-57497200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
151, 42
               

               
Conread position:
               
493-673
               

               
Cow position:
               
chr5:65745730-65745549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
493-680
               

               
Cow position:
               
chr5:62995993-62996185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
493-695
               

               
Cow position:
               
chr5:1694052-1693851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
150, 41
               

               
Conread position:
               
493-695
               

               
Cow position:
               
chr5:38647676-38647897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 42
               

               
Conread position:
               
494-680
               

               
Cow position:
               
chr5:44901546-44901746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 40
               

               
Conread position:
               
494-683
               

               
Cow position:
               
chr5:3677760-3677957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 29
               

               
Conread position:
               
496-607
               

               
Cow position:
               
chr5:1946870-1946979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
496-614
               

               
Cow position:
               
chr5:6130610-6130725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
496-666
               

               
Cow position:
               
chr5:38040525-38040356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
147, 39
               

               
Conread position:
               
496-675
               

               
Cow position:
               
chr5:44734686-44734506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
143, 38
               

               
Conread position:
               
496-680
               

               
Cow position:
               
chr5:24915488-24915299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
496-681
               

               
Cow position:
               
chr5:41984393-41984568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
496-685
               

               
Cow position:
               
chr5:7676116-7675927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
144, 38
               

               
Conread position:
               
496-692
               

               
Cow position:
               
chr5:44810200-44810000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
144, 38
               

               
Conread position:
               
496-693
               

               
Cow position:
               
chr5:16185417-16185617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
148, 38
               

               
Conread position:
               
496-694
               

               
Cow position:
               
chr5:41736221-41736422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
148, 38
               

               
Conread position:
               
496-695
               

               
Cow position:
               
chr5:12562721-12562520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
496-695
               

               
Cow position:
               
chr5:13270978-13270772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
496-696
               

               
Cow position:
               
chr5:19079291-19079482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
160, 39
               

               
Conread position:
               
496-697
               

               
Cow position:
               
chr5:54127329-54127529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
132, 38
               

               
Conread position:
               
496-697
               

               
Cow position:
               
chr5:57399213-57399008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
144, 18
               

               
Conread position:
               
497-679
               

               
Cow position:
               
chr5:70591594-70591767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
146, 37
               

               
Conread position:
               
497-694
               

               
Cow position:
               
chr5:15991599-15991406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
144, 37
               

               
Conread position:
               
497-697
               

               
Cow position:
               
chr5:4864583-4864782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
142, 37
               

               
Conread position:
               
498-608
               

               
Cow position:
               
chr5:23207136-23207026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
41, 36
               

               
Conread position:
               
498-692
               

               
Cow position:
               
chr5:27550913-27550724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
498-695
               

               
Cow position:
               
chr5:43839958-43839751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
498-696
               

               
Cow position:
               
chr5:35394392-35394198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
158, 36
               

               
Conread position:
               
498-697
               

               
Cow position:
               
chr5:3817646-3817443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
145, 36
               

               
Conread position:
               
499-668
               

               
Cow position:
               
chr5:53980712-53980538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
144, 35
               

               
Conread position:
               
499-668
               

               
Cow position:
               
chr5:54753210-54753035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 36
               

               
Conread position:
               
499-676
               

               
Cow position:
               
chr5:29256665-29256486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
87, 35
               

               
Conread position:
               
499-678
               

               
Cow position:
               
chr5:19294484-19294295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
97, 36
               

               
Conread position:
               
499-680
               

               
Cow position:
               
chr5:22102600-22102779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
159, 35
               

               
Conread position:
               
499-683
               

               
Cow position:
               
chr5:4824189-4824382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
499-684
               

               
Cow position:
               
chr5:6876926-6876735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
44, 32
               

               
Conread position:
               
499-684
               

               
Cow position:
               
chr5:48062075-48061876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 37
               

               
Conread position:
               
499-695
               

               
Cow position:
               
chr5:2355562-2355760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
499-697
               

               
Cow position:
               
chr5:40122568-40122364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
143, 36
               

               
Conread position:
               
499-697
               

               
Cow position:
               
chr5:46421628-46421844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
499-697
               

               
Cow position:
               
chr5:56433923-56434128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
25, 31
               

               
Conread position:
               
499-697
               

               
Cow position:
               
chr5:62011725-62011928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
144, 36
               

               
Conread position:
               
500-618
               

               
Cow position:
               
chr5:1090776-1090662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
500-641
               

               
Cow position:
               
chr5:60126733-60126877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
101, 35
               

               
Conread position:
               
500-673
               

               
Cow position:
               
chr5:22387016-22386848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
158, 34
               

               
Conread position:
               
500-680
               

               
Cow position:
               
chr5:56327678-56327500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 104
               

               
Conread position:
               
500-694
               

               
Cow position:
               
chr5:52849127-52849321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
500-695
               

               
Cow position:
               
chr5:54340810-54341008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
501-675
               

               
Cow position:
               
chr5:5017420-5017592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
501-695
               

               
Cow position:
               
chr5:31648464-31648658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
501-696
               

               
Cow position:
               
chr5:36370323-36370519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
503-684
               

               
Cow position:
               
chr5:57302811-57303003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 31
               

               
Conread position:
               
503-692
               

               
Cow position:
               
chr5:57087017-57086824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
140, 31
               

               
Conread position:
               
504-606
               

               
Cow position:
               
chr5:57785556-57785658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
92, 30
               

               
Conread position:
               
508-681
               

               
Cow position:
               
chr5:53175207-53175022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
508-684
               

               
Cow position:
               
chr5:37253480-37253653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
135, 26
               

               
Conread position:
               
508-694
               

               
Cow position:
               
chr5:34918397-34918585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
135, 26
               

               
Conread position:
               
509-671
               

               
Cow position:
               
chr5:52029459-52029621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
509-680
               

               
Cow position:
               
chr5:58401621-58401791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
149, 26
               

               
Conread position:
               
509-696
               

               
Cow position:
               
chr5:60207760-60207947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
510-678
               

               
Cow position:
               
chr5:29599493-29599328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
148, 24
               

               
Conread position:
               
510-681
               

               
Cow position:
               
chr5:52192376-52192211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
133, 25
               

               
Conread position:
               
510-683
               

               
Cow position:
               
chr5:49207274-49207100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
117, 26
               

               
Conread position:
               
510-684
               

               
Cow position:
               
chr5:29895224-29895401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
133, 25
               

               
Conread position:
               
510-697
               

               
Cow position:
               
chr5:60100523-60100706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
148, 24
               

               
Conread position:
               
510-697
               

               
Cow position:
               
chr5:60153828-60154011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
148, 24
               

               
Conread position:
               
511-684
               

               
Cow position:
               
chr5:38420655-38420838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
512-697
               

               
Cow position:
               
chr5:24464802-24464983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
146, 18
               

               
Conread position:
               
512-697
               

               
Cow position:
               
chr5:34347679-34347490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
512-697
               

               
Cow position:
               
chr5:61580336-61580523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
513-621
               

               
Cow position:
               
chr5:14354131-14354238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
513-625
               

               
Cow position:
               
chr5:62802443-62802555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
513-694
               

               
Cow position:
               
chr5:17987838-17987651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 21
               

               
Conread position:
               
513-697
               

               
Cow position:
               
chr5:21339213-21339018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
513-697
               

               
Cow position:
               
chr5:21721414-21721234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
513-697
               

               
Cow position:
               
chr5:41755933-41755745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
515-619
               

               
Cow position:
               
chr5:48820787-48820890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
515-667
               

               
Cow position:
               
chr5:64843913-64843752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
515-684
               

               
Cow position:
               
chr5:38079428-38079604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
103, 19
               

               
Conread position:
               
516-669
               

               
Cow position:
               
chr5:4981509-4981660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
126, 18
               

               
Conread position:
               
516-684
               

               
Cow position:
               
chr5:46479183-46479017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
516-693
               

               
Cow position:
               
chr5:19968300-19968120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
125, 18
               

               
Conread position:
               
516-694
               

               
Cow position:
               
chr5:29010311-29010487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
6, 99
               

               
Conread position:
               
517-684
               

               
Cow position:
               
chr5:22957470-22957633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
517-691
               

               
Cow position:
               
chr5:34787634-34787809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
517-697
               

               
Cow position:
               
chr5:63300138-63300321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
518-697
               

               
Cow position:
               
chr5:15770394-15770208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
519-684
               

               
Cow position:
               
chr5:67339945-67340111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 15
               

               
Conread position:
               
519-696
               

               
Cow position:
               
chr5:5030505-5030679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
522-686
               

               
Cow position:
               
chr5:56643132-56643300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
108, 12
               

               
Conread position:
               
523-696
               

               
Cow position:
               
chr5:58237384-58237211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
525-679
               

               
Cow position:
               
chr5:69765966-69765809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
118, 11
               

               
Conread position:
               
529-677
               

               
Cow position:
               
chr5:15077562-15077411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 6
               

               
Conread position:
               
532-697
               

               
Cow position:
               
chr5:56624443-56624270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
62, 166
               

               
Conread position:
               
533-669
               

               
Cow position:
               
chr5:45436421-45436289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
533-674
               

               
Cow position:
               
chr5:64142580-64142434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
533-684
               

               
Cow position:
               
chr5:32731335-32731190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
99, 81
               

               
Conread position:
               
533-685
               

               
Cow position:
               
chr5:29507514-29507367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
110, 79
               

               
Conread position:
               
533-695
               

               
Cow position:
               
chr5:55783888-55783723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 154
               

               
Conread position:
               
533-696
               

               
Cow position:
               
chr5:57447591-57447422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
533-697
               

               
Cow position:
               
chr5:19626653-19626817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
110, 84
               

               
Conread position:
               
533-697
               

               
Cow position:
               
chr5:49183225-49183384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
533-697
               

               
Cow position:
               
chr5:59511397-59511238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
125, 79
               

               
Conread position:
               
535-684
               

               
Cow position:
               
chr5:34639199-34639354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
535-687
               

               
Cow position:
               
chr5:45854574-45854733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 155
               

               
Conread position:
               
535-694
               

               
Cow position:
               
chr5:17537596-17537439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
105, 77
               

               
Conread position:
               
535-694
               

               
Cow position:
               
chr5:58487452-58487615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
104, 82
               

               
Conread position:
               
536-693
               

               
Cow position:
               
chr5:6245585-6245426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
105, 81
               

               
Conread position:
               
536-695
               

               
Cow position:
               
chr5:24108982-24108815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
51, 43
               

               
Conread position:
               
537-697
               

               
Cow position:
               
chr5:4728153-4728311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
121, 89
               

               
Conread position:
               
538-684
               

               
Cow position:
               
chr5:28660310-28660461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 65
               

               
Conread position:
               
540-696
               

               
Cow position:
               
chr5:3627095-3626939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
541-679
               

               
Cow position:
               
chr5:21520358-21520225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 61
               

               
Conread position:
               
541-691
               

               
Cow position:
               
chr5:48104344-48104498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
545-695
               

               
Cow position:
               
chr5:74049911-74050062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
97, 67
               

               
Conread position:
               
557-697
               

               
Cow position:
               
chr5:62543937-62544078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
9, 116
               

               
Conread position:
               
564-692
               

               
Cow position:
               
chr5:63940343-63940216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 54
               

               
Conread position:
               
568-692
               

               
Cow position:
               
chr5:74690144-74690014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
574-696
               

               
Cow position:
               
chr5:42703875-42704002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               
Show alignments to all cow chromosomes.