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Cow genome map

           
Conread name:
           
Pig3-SRG8015N22
        

               
Conread position:
               
9-494
               

               
Cow position:
               
chr6:25773812-25773335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 90
               

               
Conread position:
               
9-693
               

               
Cow position:
               
chr6:44194954-44194305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 63
               

               
Conread position:
               
10-425
               

               
Cow position:
               
chr6:52401461-52401844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 70
               

               
Conread position:
               
20-445
               

               
Cow position:
               
chr6:45160692-45160290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 66
               

               
Conread position:
               
37-591
               

               
Cow position:
               
chr6:60350686-60350145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 62
               

               
Conread position:
               
89-666
               

               
Cow position:
               
chr6:59302139-59301567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
149, 132
               

               
Conread position:
               
89-676
               

               
Cow position:
               
chr6:65903967-65903391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 157
               

               
Conread position:
               
122-437
               

               
Cow position:
               
chr6:50020215-50020533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
48, 29
               

               
Conread position:
               
128-608
               

               
Cow position:
               
chr6:63719889-63720365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 67
               

               
Conread position:
               
130-455
               

               
Cow position:
               
chr6:59302136-59301806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
139-462
               

               
Cow position:
               
chr6:6995245-6994934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
139-607
               

               
Cow position:
               
chr6:53651757-53652203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
142-483
               

               
Cow position:
               
chr6:49685291-49685624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 39
               

               
Conread position:
               
149-613
               

               
Cow position:
               
chr6:28080178-28079745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
6, 62
               

               
Conread position:
               
151-594
               

               
Cow position:
               
chr6:8788321-8787887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 18
               

               
Conread position:
               
155-597
               

               
Cow position:
               
chr6:66874077-66874501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
156-510
               

               
Cow position:
               
chr6:10253965-10254308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 54
               

               
Conread position:
               
159-626
               

               
Cow position:
               
chr6:56376629-56376168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 96
               

               
Conread position:
               
162-695
               

               
Cow position:
               
chr6:15301093-15300586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 16
               

               
Conread position:
               
163-684
               

               
Cow position:
               
chr6:36202559-36203064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 46
               

               
Conread position:
               
165-696
               

               
Cow position:
               
chr6:16103477-16102936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 146
               

               
Conread position:
               
173-684
               

               
Cow position:
               
chr6:37148941-37149425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 8
               

               
Conread position:
               
174-685
               

               
Cow position:
               
chr6:4383228-4383717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 33
               

               
Conread position:
               
175-553
               

               
Cow position:
               
chr6:3929056-3929427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
167, 72
               

               
Conread position:
               
176-678
               

               
Cow position:
               
chr6:67950696-67951194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
423, 6
               

               
Conread position:
               
177-493
               

               
Cow position:
               
chr6:52025919-52025601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
181-692
               

               
Cow position:
               
chr6:8599745-8600255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
310, 258
               

               
Conread position:
               
184-602
               

               
Cow position:
               
chr6:45065260-45064860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
185-421
               

               
Cow position:
               
chr6:51191560-51191806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
113, 62
               

               
Conread position:
               
185-453
               

               
Cow position:
               
chr6:1889336-1889079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
152, 62
               

               
Conread position:
               
185-604
               

               
Cow position:
               
chr6:9453022-9452610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 40
               

               
Conread position:
               
187-617
               

               
Cow position:
               
chr6:21869898-21869476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 151
               

               
Conread position:
               
194-442
               

               
Cow position:
               
chr6:30826280-30826031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
135, 53
               

               
Conread position:
               
195-588
               

               
Cow position:
               
chr6:35613652-35613273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 27
               

               
Conread position:
               
197-578
               

               
Cow position:
               
chr6:47327311-47326940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
54, 135
               

               
Conread position:
               
197-677
               

               
Cow position:
               
chr6:19401619-19402081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
172, 120
               

               
Conread position:
               
205-615
               

               
Cow position:
               
chr6:51674683-51675079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 115
               

               
Conread position:
               
207-540
               

               
Cow position:
               
chr6:7824530-7824862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 37
               

               
Conread position:
               
207-549
               

               
Cow position:
               
chr6:52248366-52248025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
207-618
               

               
Cow position:
               
chr6:8209822-8209430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 128
               

               
Conread position:
               
209-694
               

               
Cow position:
               
chr6:24468623-24468146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
210-617
               

               
Cow position:
               
chr6:6343196-6343602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 105
               

               
Conread position:
               
211-668
               

               
Cow position:
               
chr6:41733398-41733862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 124
               

               
Conread position:
               
211-694
               

               
Cow position:
               
chr6:21004427-21004932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
212-442
               

               
Cow position:
               
chr6:40264425-40264199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
155, 108
               

               
Conread position:
               
212-679
               

               
Cow position:
               
chr6:34475771-34475320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
212-680
               

               
Cow position:
               
chr6:323538-323063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 194
               

               
Conread position:
               
212-694
               

               
Cow position:
               
chr6:12927892-12928394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 120
               

               
Conread position:
               
212-694
               

               
Cow position:
               
chr6:59015790-59015325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
39, 124
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr6:1002460-1002277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
214-425
               

               
Cow position:
               
chr6:55538349-55538138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
214-425
               

               
Cow position:
               
chr6:65910249-65910458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
214-426
               

               
Cow position:
               
chr6:21311984-21311763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
214-432
               

               
Cow position:
               
chr6:12947580-12947358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
214-432
               

               
Cow position:
               
chr6:21712630-21712852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
214-432
               

               
Cow position:
               
chr6:46224761-46224541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
214-435
               

               
Cow position:
               
chr6:40138931-40138722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
214-436
               

               
Cow position:
               
chr6:54885139-54884915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
128, 106
               

               
Conread position:
               
214-439
               

               
Cow position:
               
chr6:32916146-32915926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
130, 103
               

               
Conread position:
               
214-442
               

               
Cow position:
               
chr6:32210852-32210627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
214-443
               

               
Cow position:
               
chr6:7103461-7103227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
214-445
               

               
Cow position:
               
chr6:1891071-1890840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
134, 33
               

               
Conread position:
               
214-472
               

               
Cow position:
               
chr6:28065911-28066173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 242
               

               
Conread position:
               
214-483
               

               
Cow position:
               
chr6:36928426-36928700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
89, 33
               

               
Conread position:
               
214-484
               

               
Cow position:
               
chr6:58075999-58076270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
130, 32
               

               
Conread position:
               
214-485
               

               
Cow position:
               
chr6:3936320-3936593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
172, 33
               

               
Conread position:
               
214-487
               

               
Cow position:
               
chr6:62479391-62479117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
156, 33
               

               
Conread position:
               
214-489
               

               
Cow position:
               
chr6:20231051-20230781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 51
               

               
Conread position:
               
214-505
               

               
Cow position:
               
chr6:47150553-47150854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
214-508
               

               
Cow position:
               
chr6:16410970-16411254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 33
               

               
Conread position:
               
214-516
               

               
Cow position:
               
chr6:34075798-34076103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
214-520
               

               
Cow position:
               
chr6:40760910-40761202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
214-536
               

               
Cow position:
               
chr6:44098859-44099178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 33
               

               
Conread position:
               
214-541
               

               
Cow position:
               
chr6:62925221-62924899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
214-551
               

               
Cow position:
               
chr6:64449166-64449484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
214-559
               

               
Cow position:
               
chr6:35471752-35471395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 229
               

               
Conread position:
               
214-563
               

               
Cow position:
               
chr6:130390-130044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 33
               

               
Conread position:
               
214-563
               

               
Cow position:
               
chr6:60673322-60673684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
105, 25
               

               
Conread position:
               
214-578
               

               
Cow position:
               
chr6:27110365-27110731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
214-589
               

               
Cow position:
               
chr6:17090373-17090743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
214-591
               

               
Cow position:
               
chr6:37634564-37634942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 24
               

               
Conread position:
               
214-597
               

               
Cow position:
               
chr6:16706781-16707165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 99
               

               
Conread position:
               
214-599
               

               
Cow position:
               
chr6:12551042-12551427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
214-600
               

               
Cow position:
               
chr6:63047350-63047748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 99
               

               
Conread position:
               
214-601
               

               
Cow position:
               
chr6:11169482-11169860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
214-601
               

               
Cow position:
               
chr6:42961593-42961206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 199
               

               
Conread position:
               
214-610
               

               
Cow position:
               
chr6:68049210-68049584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 33
               

               
Conread position:
               
214-611
               

               
Cow position:
               
chr6:35103553-35103161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 33
               

               
Conread position:
               
214-615
               

               
Cow position:
               
chr6:46570894-46571277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 40
               

               
Conread position:
               
214-619
               

               
Cow position:
               
chr6:54867285-54867692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 65
               

               
Conread position:
               
214-621
               

               
Cow position:
               
chr6:222666-222278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
60, 134
               

               
Conread position:
               
214-626
               

               
Cow position:
               
chr6:48573108-48572698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
98, 29
               

               
Conread position:
               
214-636
               

               
Cow position:
               
chr6:35842435-35842849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 26
               

               
Conread position:
               
214-638
               

               
Cow position:
               
chr6:61269104-61269502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 89
               

               
Conread position:
               
214-641
               

               
Cow position:
               
chr6:26915104-26915522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 122
               

               
Conread position:
               
214-648
               

               
Cow position:
               
chr6:6264418-6264854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
214-655
               

               
Cow position:
               
chr6:60859532-60859090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
130, 230
               

               
Conread position:
               
214-666
               

               
Cow position:
               
chr6:51835174-51835623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 98
               

               
Conread position:
               
214-667
               

               
Cow position:
               
chr6:21587647-21587208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 199
               

               
Conread position:
               
214-668
               

               
Cow position:
               
chr6:15305360-15305798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
214-668
               

               
Cow position:
               
chr6:54132592-54133038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 95
               

               
Conread position:
               
214-669
               

               
Cow position:
               
chr6:41375527-41375998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
214-675
               

               
Cow position:
               
chr6:49398842-49398395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 100
               

               
Conread position:
               
214-676
               

               
Cow position:
               
chr6:24031149-24031598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 195
               

               
Conread position:
               
214-676
               

               
Cow position:
               
chr6:38853884-38853421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 175
               

               
Conread position:
               
214-677
               

               
Cow position:
               
chr6:61113524-61114001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 215
               

               
Conread position:
               
214-678
               

               
Cow position:
               
chr6:46465602-46466055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 116
               

               
Conread position:
               
214-680
               

               
Cow position:
               
chr6:17557149-17557614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
214-680
               

               
Cow position:
               
chr6:53178414-53178865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 29
               

               
Conread position:
               
214-680
               

               
Cow position:
               
chr6:61631845-61631369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 236
               

               
Conread position:
               
214-681
               

               
Cow position:
               
chr6:18080740-18080276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 216
               

               
Conread position:
               
214-683
               

               
Cow position:
               
chr6:15242610-15243081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
214-683
               

               
Cow position:
               
chr6:18447734-18447273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
214-684
               

               
Cow position:
               
chr6:21534833-21535283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 106
               

               
Conread position:
               
214-684
               

               
Cow position:
               
chr6:28148025-28148507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 14
               

               
Conread position:
               
214-684
               

               
Cow position:
               
chr6:66363470-66362989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
141, 95
               

               
Conread position:
               
214-685
               

               
Cow position:
               
chr6:8562490-8562958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 242
               

               
Conread position:
               
214-685
               

               
Cow position:
               
chr6:54991218-54990756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
214-686
               

               
Cow position:
               
chr6:13688037-13687573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 106
               

               
Conread position:
               
214-693
               

               
Cow position:
               
chr6:6060783-6060323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 129
               

               
Conread position:
               
214-693
               

               
Cow position:
               
chr6:9736865-9736394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 37
               

               
Conread position:
               
214-693
               

               
Cow position:
               
chr6:16700033-16700505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 98
               

               
Conread position:
               
214-693
               

               
Cow position:
               
chr6:34251501-34251046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
156, 26
               

               
Conread position:
               
214-693
               

               
Cow position:
               
chr6:51581485-51581003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 208
               

               
Conread position:
               
214-694
               

               
Cow position:
               
chr6:26728752-26728290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 33
               

               
Conread position:
               
214-694
               

               
Cow position:
               
chr6:29210276-29210729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 19
               

               
Conread position:
               
214-695
               

               
Cow position:
               
chr6:2547017-2547515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 37
               

               
Conread position:
               
214-695
               

               
Cow position:
               
chr6:32867432-32866968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 127
               

               
Conread position:
               
214-696
               

               
Cow position:
               
chr6:11192678-11192225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 92
               

               
Conread position:
               
214-696
               

               
Cow position:
               
chr6:23695772-23696248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 33
               

               
Conread position:
               
214-696
               

               
Cow position:
               
chr6:46557832-46558310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 23
               

               
Conread position:
               
214-696
               

               
Cow position:
               
chr6:47519825-47520306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 30
               

               
Conread position:
               
214-696
               

               
Cow position:
               
chr6:52478653-52478154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 33
               

               
Conread position:
               
214-696
               

               
Cow position:
               
chr6:54365549-54365075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
214-696
               

               
Cow position:
               
chr6:60144403-60143945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 93
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr6:7131097-7130606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 98
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr6:17414679-17414193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr6:32121685-32122150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 98
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr6:35181479-35180997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 98
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr6:40031968-40032439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 33
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr6:50746755-50747262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 68
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr6:53933066-53932586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 27
               

               
Conread position:
               
214-697
               

               
Cow position:
               
chr6:64431713-64432190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 98
               

               
Conread position:
               
215-402
               

               
Cow position:
               
chr6:10649243-10649063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
153, 46
               

               
Conread position:
               
215-418
               

               
Cow position:
               
chr6:19508655-19508463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
215-426
               

               
Cow position:
               
chr6:20605709-20605921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
215-428
               

               
Cow position:
               
chr6:1783997-1783790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 62
               

               
Conread position:
               
215-431
               

               
Cow position:
               
chr6:55040442-55040221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
215-441
               

               
Cow position:
               
chr6:54647747-54647521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
131, 89
               

               
Conread position:
               
215-442
               

               
Cow position:
               
chr6:57685934-57686155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
69, 100
               

               
Conread position:
               
215-442
               

               
Cow position:
               
chr6:61575379-61575610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
129, 50
               

               
Conread position:
               
215-481
               

               
Cow position:
               
chr6:16737796-16738056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
153, 32
               

               
Conread position:
               
215-487
               

               
Cow position:
               
chr6:53710893-53711158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 32
               

               
Conread position:
               
215-494
               

               
Cow position:
               
chr6:58172960-58173235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 54
               

               
Conread position:
               
215-515
               

               
Cow position:
               
chr6:642802-642496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 222
               

               
Conread position:
               
215-523
               

               
Cow position:
               
chr6:21542095-21542403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 113
               

               
Conread position:
               
215-546
               

               
Cow position:
               
chr6:48169720-48170040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
105, 91
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chr6:54600144-54600454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
214, 32
               

               
Conread position:
               
215-594
               

               
Cow position:
               
chr6:57164205-57164575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 42
               

               
Conread position:
               
215-604
               

               
Cow position:
               
chr6:34196373-34195989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 101
               

               
Conread position:
               
215-626
               

               
Cow position:
               
chr6:18987992-18988391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 31
               

               
Conread position:
               
215-639
               

               
Cow position:
               
chr6:40713724-40713317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 25
               

               
Conread position:
               
215-641
               

               
Cow position:
               
chr6:28482790-28483211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 223
               

               
Conread position:
               
215-676
               

               
Cow position:
               
chr6:24781788-24781316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
215-683
               

               
Cow position:
               
chr6:65870799-65871273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 327
               

               
Conread position:
               
215-684
               

               
Cow position:
               
chr6:32287395-32287874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 54
               

               
Conread position:
               
215-685
               

               
Cow position:
               
chr6:13367070-13367528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 82
               

               
Conread position:
               
215-687
               

               
Cow position:
               
chr6:2607388-2607854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 114
               

               
Conread position:
               
215-696
               

               
Cow position:
               
chr6:29239718-29240186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
215-697
               

               
Cow position:
               
chr6:3952298-3952775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
215-697
               

               
Cow position:
               
chr6:3978888-3978383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
216-400
               

               
Cow position:
               
chr6:17248514-17248694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
216-403
               

               
Cow position:
               
chr6:28559191-28559386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
216-421
               

               
Cow position:
               
chr6:388947-389150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
128, 65
               

               
Conread position:
               
216-444
               

               
Cow position:
               
chr6:2012795-2013021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
216-519
               

               
Cow position:
               
chr6:19719496-19719802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
56, 39
               

               
Conread position:
               
216-525
               

               
Cow position:
               
chr6:18961746-18961434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 31
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chr6:1944507-1944809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
186, 35
               

               
Conread position:
               
216-587
               

               
Cow position:
               
chr6:20098188-20097816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 96
               

               
Conread position:
               
216-589
               

               
Cow position:
               
chr6:56842936-56843299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 34
               

               
Conread position:
               
216-600
               

               
Cow position:
               
chr6:19681744-19681369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 24
               

               
Conread position:
               
216-611
               

               
Cow position:
               
chr6:35990446-35990067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 31
               

               
Conread position:
               
216-611
               

               
Cow position:
               
chr6:67214518-67214916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
216-618
               

               
Cow position:
               
chr6:5302628-5302247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 104
               

               
Conread position:
               
216-680
               

               
Cow position:
               
chr6:6063503-6063053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 106
               

               
Conread position:
               
216-684
               

               
Cow position:
               
chr6:31535794-31535330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
216-684
               

               
Cow position:
               
chr6:43345682-43345195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
216-685
               

               
Cow position:
               
chr6:27851928-27851469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 31
               

               
Conread position:
               
216-695
               

               
Cow position:
               
chr6:48281771-48282251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
217-412
               

               
Cow position:
               
chr6:55608029-55607841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
151, 107
               

               
Conread position:
               
217-506
               

               
Cow position:
               
chr6:5445406-5445686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
127, 51
               

               
Conread position:
               
217-506
               

               
Cow position:
               
chr6:8804750-8804466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 34
               

               
Conread position:
               
217-548
               

               
Cow position:
               
chr6:7173987-7173645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 217
               

               
Conread position:
               
217-570
               

               
Cow position:
               
chr6:47026258-47026603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
217-597
               

               
Cow position:
               
chr6:55475027-55475408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
128, 23
               

               
Conread position:
               
217-680
               

               
Cow position:
               
chr6:46860390-46859932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 30
               

               
Conread position:
               
217-696
               

               
Cow position:
               
chr6:13040229-13040707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 186
               

               
Conread position:
               
218-669
               

               
Cow position:
               
chr6:38207717-38207258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 29
               

               
Conread position:
               
218-674
               

               
Cow position:
               
chr6:39358562-39358110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 29
               

               
Conread position:
               
218-683
               

               
Cow position:
               
chr6:61515419-61514954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 29
               

               
Conread position:
               
218-696
               

               
Cow position:
               
chr6:33302188-33302651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
219-442
               

               
Cow position:
               
chr6:30786369-30786154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
219-684
               

               
Cow position:
               
chr6:7539352-7539818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 104
               

               
Conread position:
               
219-695
               

               
Cow position:
               
chr6:4468524-4469021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 227
               

               
Conread position:
               
220-609
               

               
Cow position:
               
chr6:47339569-47339191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 101
               

               
Conread position:
               
221-691
               

               
Cow position:
               
chr6:5609659-5609192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 100
               

               
Conread position:
               
222-442
               

               
Cow position:
               
chr6:48807217-48806994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
222-473
               

               
Cow position:
               
chr6:58594327-58594076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
23, 95
               

               
Conread position:
               
222-603
               

               
Cow position:
               
chr6:1886880-1886507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 16
               

               
Conread position:
               
222-605
               

               
Cow position:
               
chr6:21110751-21111112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
222-684
               

               
Cow position:
               
chr6:8965872-8966331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 35
               

               
Conread position:
               
225-385
               

               
Cow position:
               
chr6:21184741-21184902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
117, 90
               

               
Conread position:
               
225-392
               

               
Cow position:
               
chr6:60017853-60018018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
64, 83
               

               
Conread position:
               
225-421
               

               
Cow position:
               
chr6:7694568-7694368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
117, 22
               

               
Conread position:
               
225-427
               

               
Cow position:
               
chr6:50120002-50119800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
152, 99
               

               
Conread position:
               
225-437
               

               
Cow position:
               
chr6:10605470-10605684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
119, 146
               

               
Conread position:
               
225-442
               

               
Cow position:
               
chr6:60931115-60930897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
79, 166
               

               
Conread position:
               
225-445
               

               
Cow position:
               
chr6:15923212-15922995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
225-446
               

               
Cow position:
               
chr6:1907324-1907546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
23, 162
               

               
Conread position:
               
225-446
               

               
Cow position:
               
chr6:8318381-8318158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 107
               

               
Conread position:
               
225-446
               

               
Cow position:
               
chr6:39994676-39994456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 161
               

               
Conread position:
               
225-451
               

               
Cow position:
               
chr6:28136970-28137203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
225-457
               

               
Cow position:
               
chr6:13741481-13741719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
119, 37
               

               
Conread position:
               
225-465
               

               
Cow position:
               
chr6:45617655-45617412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
119, 146
               

               
Conread position:
               
225-489
               

               
Cow position:
               
chr6:48344113-48344378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 226
               

               
Conread position:
               
225-503
               

               
Cow position:
               
chr6:34031453-34031721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
270, 84
               

               
Conread position:
               
225-532
               

               
Cow position:
               
chr6:242599-242890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 84
               

               
Conread position:
               
225-546
               

               
Cow position:
               
chr6:6642803-6642506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
140, 25
               

               
Conread position:
               
225-547
               

               
Cow position:
               
chr6:20329806-20330111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 169
               

               
Conread position:
               
225-563
               

               
Cow position:
               
chr6:899499-899174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 44
               

               
Conread position:
               
225-588
               

               
Cow position:
               
chr6:31525834-31526190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 22
               

               
Conread position:
               
225-597
               

               
Cow position:
               
chr6:63197386-63197010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
113, 75
               

               
Conread position:
               
225-599
               

               
Cow position:
               
chr6:60442204-60442562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
225-600
               

               
Cow position:
               
chr6:28977246-28976884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 99
               

               
Conread position:
               
225-600
               

               
Cow position:
               
chr6:42565471-42565843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 45
               

               
Conread position:
               
225-618
               

               
Cow position:
               
chr6:14839241-14838868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
225-618
               

               
Cow position:
               
chr6:66532016-66531648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 22
               

               
Conread position:
               
225-621
               

               
Cow position:
               
chr6:25407611-25407215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
225-648
               

               
Cow position:
               
chr6:54430604-54431031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 205
               

               
Conread position:
               
225-676
               

               
Cow position:
               
chr6:32269083-32268652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
120, 9
               

               
Conread position:
               
225-676
               

               
Cow position:
               
chr6:35435788-35436222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 98
               

               
Conread position:
               
225-676
               

               
Cow position:
               
chr6:36470778-36470343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
225-680
               

               
Cow position:
               
chr6:8637060-8637506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 95
               

               
Conread position:
               
225-680
               

               
Cow position:
               
chr6:45690808-45690380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
225-681
               

               
Cow position:
               
chr6:53460786-53460331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
225-682
               

               
Cow position:
               
chr6:19427234-19427688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
119, 204
               

               
Conread position:
               
225-683
               

               
Cow position:
               
chr6:66433733-66434196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 99
               

               
Conread position:
               
225-684
               

               
Cow position:
               
chr6:5095765-5095297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 95
               

               
Conread position:
               
225-684
               

               
Cow position:
               
chr6:17997530-17997074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 97
               

               
Conread position:
               
225-684
               

               
Cow position:
               
chr6:54490955-54490503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 226
               

               
Conread position:
               
225-692
               

               
Cow position:
               
chr6:6067892-6067460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 97
               

               
Conread position:
               
225-696
               

               
Cow position:
               
chr6:16746125-16746606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 69
               

               
Conread position:
               
225-697
               

               
Cow position:
               
chr6:10176516-10176040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
225-697
               

               
Cow position:
               
chr6:35415736-35415261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
72, 22
               

               
Conread position:
               
226-445
               

               
Cow position:
               
chr6:50445973-50445756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
109, 21
               

               
Conread position:
               
226-571
               

               
Cow position:
               
chr6:23248177-23247839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 178
               

               
Conread position:
               
226-590
               

               
Cow position:
               
chr6:58073831-58074193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 80
               

               
Conread position:
               
226-599
               

               
Cow position:
               
chr6:38218458-38218821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 96
               

               
Conread position:
               
226-626
               

               
Cow position:
               
chr6:28476968-28477349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
268, 91
               

               
Conread position:
               
226-687
               

               
Cow position:
               
chr6:10332310-10331852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
122, 204
               

               
Conread position:
               
227-537
               

               
Cow position:
               
chr6:24961932-24962238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 165
               

               
Conread position:
               
227-583
               

               
Cow position:
               
chr6:38614611-38614951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
227-595
               

               
Cow position:
               
chr6:49002937-49002589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 20
               

               
Conread position:
               
227-597
               

               
Cow position:
               
chr6:31564546-31564185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
227-615
               

               
Cow position:
               
chr6:40774561-40774161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 93
               

               
Conread position:
               
227-680
               

               
Cow position:
               
chr6:38440969-38441419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 95
               

               
Conread position:
               
227-684
               

               
Cow position:
               
chr6:49421989-49421553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
417, 20
               

               
Conread position:
               
227-684
               

               
Cow position:
               
chr6:55282502-55282049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 20
               

               
Conread position:
               
227-684
               

               
Cow position:
               
chr6:62324777-62325236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 104
               

               
Conread position:
               
227-687
               

               
Cow position:
               
chr6:44078309-44078761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 19
               

               
Conread position:
               
227-688
               

               
Cow position:
               
chr6:10106209-10105737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 321
               

               
Conread position:
               
227-691
               

               
Cow position:
               
chr6:9008824-9008354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 97
               

               
Conread position:
               
227-692
               

               
Cow position:
               
chr6:56849805-56850268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 82
               

               
Conread position:
               
227-693
               

               
Cow position:
               
chr6:12500647-12501097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 182
               

               
Conread position:
               
227-697
               

               
Cow position:
               
chr6:38771083-38771527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 20
               

               
Conread position:
               
228-442
               

               
Cow position:
               
chr6:24515405-24515196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
116, 94
               

               
Conread position:
               
228-471
               

               
Cow position:
               
chr6:6614221-6614463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
84, 215
               

               
Conread position:
               
228-489
               

               
Cow position:
               
chr6:13592498-13592754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
202, 120
               

               
Conread position:
               
228-623
               

               
Cow position:
               
chr6:7190331-7189945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 118
               

               
Conread position:
               
228-684
               

               
Cow position:
               
chr6:53025010-53024568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 120
               

               
Conread position:
               
228-684
               

               
Cow position:
               
chr6:57405336-57404893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 37
               

               
Conread position:
               
229-615
               

               
Cow position:
               
chr6:21737093-21736722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
229-684
               

               
Cow position:
               
chr6:53139140-53138695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 231
               

               
Conread position:
               
229-693
               

               
Cow position:
               
chr6:23532452-23532898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 88
               

               
Conread position:
               
230-412
               

               
Cow position:
               
chr6:46666894-46667083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
114, 57
               

               
Conread position:
               
230-599
               

               
Cow position:
               
chr6:54701330-54701698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
116, 102
               

               
Conread position:
               
233-397
               

               
Cow position:
               
chr6:31928066-31928221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
18, 60
               

               
Conread position:
               
233-405
               

               
Cow position:
               
chr6:47988983-47989149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
111, 14
               

               
Conread position:
               
233-507
               

               
Cow position:
               
chr6:61137158-61137439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
233-612
               

               
Cow position:
               
chr6:7989620-7989248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 32
               

               
Conread position:
               
233-612
               

               
Cow position:
               
chr6:14958556-14958172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 305
               

               
Conread position:
               
233-621
               

               
Cow position:
               
chr6:54864873-54864483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 14
               

               
Conread position:
               
233-640
               

               
Cow position:
               
chr6:19695600-19696002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 14
               

               
Conread position:
               
234-641
               

               
Cow position:
               
chr6:38641292-38641688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 88
               

               
Conread position:
               
234-666
               

               
Cow position:
               
chr6:12092191-12091761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
234-686
               

               
Cow position:
               
chr6:6098488-6098003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 96
               

               
Conread position:
               
235-696
               

               
Cow position:
               
chr6:445106-445577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 198
               

               
Conread position:
               
236-618
               

               
Cow position:
               
chr6:415891-416287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 22
               

               
Conread position:
               
236-624
               

               
Cow position:
               
chr6:51463820-51463458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 105
               

               
Conread position:
               
237-443
               

               
Cow position:
               
chr6:48425524-48425319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
93, 79
               

               
Conread position:
               
237-606
               

               
Cow position:
               
chr6:66131105-66131466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 72
               

               
Conread position:
               
240-569
               

               
Cow position:
               
chr6:28318210-28318522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 7
               

               
Conread position:
               
242-480
               

               
Cow position:
               
chr6:9838960-9839209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 103
               

               
Conread position:
               
243-460
               

               
Cow position:
               
chr6:24223358-24223140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
243-496
               

               
Cow position:
               
chr6:46400602-46400362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
122, 81
               

               
Conread position:
               
243-591
               

               
Cow position:
               
chr6:21231339-21231672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 80
               

               
Conread position:
               
243-612
               

               
Cow position:
               
chr6:63299220-63298864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 18
               

               
Conread position:
               
243-680
               

               
Cow position:
               
chr6:67456506-67456978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
57, 215
               

               
Conread position:
               
243-682
               

               
Cow position:
               
chr6:15938049-15937609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
243-685
               

               
Cow position:
               
chr6:10400092-10399662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 81
               

               
Conread position:
               
243-694
               

               
Cow position:
               
chr6:9751237-9750792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 81
               

               
Conread position:
               
243-694
               

               
Cow position:
               
chr6:46865790-46865332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
101, 58
               

               
Conread position:
               
244-394
               

               
Cow position:
               
chr6:21812534-21812684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
124, 92
               

               
Conread position:
               
244-400
               

               
Cow position:
               
chr6:89104-88945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
244-442
               

               
Cow position:
               
chr6:11160205-11160004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
244-445
               

               
Cow position:
               
chr6:53731325-53731526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
100, 78
               

               
Conread position:
               
244-611
               

               
Cow position:
               
chr6:16191471-16191838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
244-615
               

               
Cow position:
               
chr6:16423503-16423881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 168
               

               
Conread position:
               
244-617
               

               
Cow position:
               
chr6:37199741-37199363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 280
               

               
Conread position:
               
244-675
               

               
Cow position:
               
chr6:5114241-5113815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 14
               

               
Conread position:
               
244-684
               

               
Cow position:
               
chr6:10612670-10613073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
120, 63
               

               
Conread position:
               
246-484
               

               
Cow position:
               
chr6:18968966-18968740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
246-608
               

               
Cow position:
               
chr6:60057851-60057495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
247-432
               

               
Cow position:
               
chr6:46245516-46245325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
247-445
               

               
Cow position:
               
chr6:33276846-33277047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
247-516
               

               
Cow position:
               
chr6:60239585-60239321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
97, 73
               

               
Conread position:
               
247-524
               

               
Cow position:
               
chr6:14850907-14850633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
96, 75
               

               
Conread position:
               
247-553
               

               
Cow position:
               
chr6:22503116-22502802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
97, 204
               

               
Conread position:
               
247-588
               

               
Cow position:
               
chr6:4864733-4864403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 64
               

               
Conread position:
               
247-608
               

               
Cow position:
               
chr6:59069821-59069456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 168
               

               
Conread position:
               
247-626
               

               
Cow position:
               
chr6:36652226-36652599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
95, 76
               

               
Conread position:
               
247-641
               

               
Cow position:
               
chr6:48187774-48187383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
95, 68
               

               
Conread position:
               
247-673
               

               
Cow position:
               
chr6:58732507-58732068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 184
               

               
Conread position:
               
247-678
               

               
Cow position:
               
chr6:53519816-53519391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 83
               

               
Conread position:
               
247-680
               

               
Cow position:
               
chr6:20157131-20157574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 183
               

               
Conread position:
               
247-680
               

               
Cow position:
               
chr6:55546354-55545933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
247-684
               

               
Cow position:
               
chr6:29484898-29485326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 18
               

               
Conread position:
               
247-695
               

               
Cow position:
               
chr6:21456883-21456421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 206
               

               
Conread position:
               
247-696
               

               
Cow position:
               
chr6:67187498-67187934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 49
               

               
Conread position:
               
247-697
               

               
Cow position:
               
chr6:21062076-21061636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 64
               

               
Conread position:
               
248-396
               

               
Cow position:
               
chr6:37603331-37603478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
248-419
               

               
Cow position:
               
chr6:36011503-36011668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
116, 9
               

               
Conread position:
               
248-684
               

               
Cow position:
               
chr6:65264727-65264306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 61
               

               
Conread position:
               
249-609
               

               
Cow position:
               
chr6:37783222-37783565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
5, 92
               

               
Conread position:
               
249-680
               

               
Cow position:
               
chr6:47355633-47356065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
249-681
               

               
Cow position:
               
chr6:63252114-63251681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 63
               

               
Conread position:
               
250-445
               

               
Cow position:
               
chr6:49694186-49694385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
251-543
               

               
Cow position:
               
chr6:46292527-46292249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
92, 61
               

               
Conread position:
               
251-641
               

               
Cow position:
               
chr6:52412665-52413056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 194
               

               
Conread position:
               
251-681
               

               
Cow position:
               
chr6:6400759-6401205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 269
               

               
Conread position:
               
252-618
               

               
Cow position:
               
chr6:47799110-47799467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 51
               

               
Conread position:
               
252-685
               

               
Cow position:
               
chr6:50577332-50577759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 195
               

               
Conread position:
               
252-691
               

               
Cow position:
               
chr6:65259655-65259260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 5
               

               
Conread position:
               
257-545
               

               
Cow position:
               
chr6:67968797-67968509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 133
               

               
Conread position:
               
257-571
               

               
Cow position:
               
chr6:25008531-25008845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
185, 62
               

               
Conread position:
               
258-696
               

               
Cow position:
               
chr6:47574723-47575145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 66
               

               
Conread position:
               
263-591
               

               
Cow position:
               
chr6:47640615-47640286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 180
               

               
Conread position:
               
264-641
               

               
Cow position:
               
chr6:59104432-59104792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
78, 65
               

               
Conread position:
               
264-687
               

               
Cow position:
               
chr6:11246589-11247013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 7
               

               
Conread position:
               
265-489
               

               
Cow position:
               
chr6:49604508-49604721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
265-618
               

               
Cow position:
               
chr6:1499463-1499820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 205
               

               
Conread position:
               
265-641
               

               
Cow position:
               
chr6:8125157-8125523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 55
               

               
Conread position:
               
266-421
               

               
Cow position:
               
chr6:62854884-62855042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
266-425
               

               
Cow position:
               
chr6:18904517-18904357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
266-618
               

               
Cow position:
               
chr6:35993403-35993757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 158
               

               
Conread position:
               
266-693
               

               
Cow position:
               
chr6:60819341-60819767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 70
               

               
Conread position:
               
267-696
               

               
Cow position:
               
chr6:1703641-1704049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 156
               

               
Conread position:
               
268-694
               

               
Cow position:
               
chr6:17334229-17333803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
76, 64
               

               
Conread position:
               
269-483
               

               
Cow position:
               
chr6:54287909-54288111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 43
               

               
Conread position:
               
269-600
               

               
Cow position:
               
chr6:52901070-52901394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 30
               

               
Conread position:
               
269-673
               

               
Cow position:
               
chr6:39093573-39093977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 53
               

               
Conread position:
               
270-694
               

               
Cow position:
               
chr6:15447378-15446942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 269
               

               
Conread position:
               
271-383
               

               
Cow position:
               
chr6:7111657-7111766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
271-442
               

               
Cow position:
               
chr6:37739017-37739190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
69, 51
               

               
Conread position:
               
271-610
               

               
Cow position:
               
chr6:51968890-51969242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
25, 252
               

               
Conread position:
               
271-696
               

               
Cow position:
               
chr6:53453599-53454023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
73, 51
               

               
Conread position:
               
272-482
               

               
Cow position:
               
chr6:58364180-58363970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
70, 57
               

               
Conread position:
               
272-692
               

               
Cow position:
               
chr6:19446092-19446506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 45
               

               
Conread position:
               
273-597
               

               
Cow position:
               
chr6:19012902-19013216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 65
               

               
Conread position:
               
273-618
               

               
Cow position:
               
chr6:16764809-16764472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
213, 51
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr6:40834638-40834407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
69, 148
               

               
Conread position:
               
276-524
               

               
Cow position:
               
chr6:44984162-44984414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
69, 53
               

               
Conread position:
               
277-441
               

               
Cow position:
               
chr6:32987161-32986998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
92, 67
               

               
Conread position:
               
277-542
               

               
Cow position:
               
chr6:59108779-59109043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
67, 32
               

               
Conread position:
               
277-606
               

               
Cow position:
               
chr6:26450154-26450473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
67, 107
               

               
Conread position:
               
277-695
               

               
Cow position:
               
chr6:14914402-14913979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 43
               

               
Conread position:
               
277-697
               

               
Cow position:
               
chr6:15243088-15243515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 123
               

               
Conread position:
               
278-432
               

               
Cow position:
               
chr6:12389933-12390090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
278-438
               

               
Cow position:
               
chr6:54492621-54492456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
66, 148
               

               
Conread position:
               
278-569
               

               
Cow position:
               
chr6:12543095-12542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 57
               

               
Conread position:
               
279-428
               

               
Cow position:
               
chr6:633522-633370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
65, 150
               

               
Conread position:
               
280-680
               

               
Cow position:
               
chr6:57546376-57545990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
280-687
               

               
Cow position:
               
chr6:120079-120483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 91
               

               
Conread position:
               
280-694
               

               
Cow position:
               
chr6:31847380-31846990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
88, 56
               

               
Conread position:
               
281-633
               

               
Cow position:
               
chr6:48112045-48112382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 45
               

               
Conread position:
               
281-692
               

               
Cow position:
               
chr6:78071-77685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
63, 160
               

               
Conread position:
               
281-697
               

               
Cow position:
               
chr6:3595634-3596051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
6, 32
               

               
Conread position:
               
281-697
               

               
Cow position:
               
chr6:54036294-54035880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
61, 43
               

               
Conread position:
               
282-624
               

               
Cow position:
               
chr6:58590116-58590452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
61, 104
               

               
Conread position:
               
282-697
               

               
Cow position:
               
chr6:19264658-19264245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 42
               

               
Conread position:
               
284-599
               

               
Cow position:
               
chr6:27815625-27815315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
59, 28
               

               
Conread position:
               
284-670
               

               
Cow position:
               
chr6:60739859-60740239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 40
               

               
Conread position:
               
284-695
               

               
Cow position:
               
chr6:50984068-50984473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 134
               

               
Conread position:
               
285-656
               

               
Cow position:
               
chr6:67323161-67323516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
57, 45
               

               
Conread position:
               
285-670
               

               
Cow position:
               
chr6:19755232-19754849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 95
               

               
Conread position:
               
285-680
               

               
Cow position:
               
chr6:7128555-7128165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
286-506
               

               
Cow position:
               
chr6:57298866-57299078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
287-571
               

               
Cow position:
               
chr6:61608354-61608639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 155
               

               
Conread position:
               
288-683
               

               
Cow position:
               
chr6:19292660-19293040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
288-687
               

               
Cow position:
               
chr6:4692136-4691721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 241
               

               
Conread position:
               
289-684
               

               
Cow position:
               
chr6:67574256-67574633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 59
               

               
Conread position:
               
289-694
               

               
Cow position:
               
chr6:58370593-58370999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 248
               

               
Conread position:
               
291-436
               

               
Cow position:
               
chr6:22254136-22253989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
291-679
               

               
Cow position:
               
chr6:6965534-6965157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 35
               

               
Conread position:
               
291-680
               

               
Cow position:
               
chr6:48988284-48988673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
53, 134
               

               
Conread position:
               
291-695
               

               
Cow position:
               
chr6:9219124-9219517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
292-680
               

               
Cow position:
               
chr6:46283146-46282753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 43
               

               
Conread position:
               
292-695
               

               
Cow position:
               
chr6:17313582-17313992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 136
               

               
Conread position:
               
293-650
               

               
Cow position:
               
chr6:57571326-57571682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 158
               

               
Conread position:
               
293-676
               

               
Cow position:
               
chr6:17817132-17816760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
49, 133
               

               
Conread position:
               
294-493
               

               
Cow position:
               
chr6:29266059-29266253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
294-609
               

               
Cow position:
               
chr6:16316160-16316481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
295-492
               

               
Cow position:
               
chr6:602948-603144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
47, 27
               

               
Conread position:
               
295-611
               

               
Cow position:
               
chr6:582412-582106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 25
               

               
Conread position:
               
296-517
               

               
Cow position:
               
chr6:44756894-44757104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 106
               

               
Conread position:
               
296-697
               

               
Cow position:
               
chr6:18955211-18954836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
15, 149
               

               
Conread position:
               
300-570
               

               
Cow position:
               
chr6:15022701-15022421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
300-680
               

               
Cow position:
               
chr6:28156286-28155934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
302-550
               

               
Cow position:
               
chr6:1371369-1371120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
67, 147
               

               
Conread position:
               
302-561
               

               
Cow position:
               
chr6:47616751-47616493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
44, 127
               

               
Conread position:
               
302-676
               

               
Cow position:
               
chr6:48803779-48803405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
42, 150
               

               
Conread position:
               
302-697
               

               
Cow position:
               
chr6:55209418-55209820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
303-483
               

               
Cow position:
               
chr6:358031-357847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 144
               

               
Conread position:
               
304-676
               

               
Cow position:
               
chr6:60118010-60118377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
305-696
               

               
Cow position:
               
chr6:21399892-21399495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
306-681
               

               
Cow position:
               
chr6:45388192-45388561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
307-603
               

               
Cow position:
               
chr6:54573106-54573419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
37, 244
               

               
Conread position:
               
307-694
               

               
Cow position:
               
chr6:43135081-43134688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
307-695
               

               
Cow position:
               
chr6:4559440-4559051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
36, 142
               

               
Conread position:
               
307-695
               

               
Cow position:
               
chr6:38640094-38640486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 137
               

               
Conread position:
               
308-591
               

               
Cow position:
               
chr6:29000058-28999793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 76
               

               
Conread position:
               
308-682
               

               
Cow position:
               
chr6:21234908-21235288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 107
               

               
Conread position:
               
312-537
               

               
Cow position:
               
chr6:12829354-12829129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
312-681
               

               
Cow position:
               
chr6:53841631-53841263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
313-517
               

               
Cow position:
               
chr6:19351285-19351083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
31, 134
               

               
Conread position:
               
313-561
               

               
Cow position:
               
chr6:377006-377242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
314-606
               

               
Cow position:
               
chr6:60667291-60667571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
51, 132
               

               
Conread position:
               
317-697
               

               
Cow position:
               
chr6:50467008-50467394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 111
               

               
Conread position:
               
318-512
               

               
Cow position:
               
chr6:38233834-38234028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 125
               

               
Conread position:
               
320-531
               

               
Cow position:
               
chr6:37376647-37376426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
20, 128
               

               
Conread position:
               
321-487
               

               
Cow position:
               
chr6:1510465-1510634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
321-684
               

               
Cow position:
               
chr6:21590570-21590945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
23, 228
               

               
Conread position:
               
322-585
               

               
Cow position:
               
chr6:20206154-20206416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
322-601
               

               
Cow position:
               
chr6:50975936-50976207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
322-639
               

               
Cow position:
               
chr6:36189575-36189892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
20, 107
               

               
Conread position:
               
322-680
               

               
Cow position:
               
chr6:33206630-33206968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
104, 17
               

               
Conread position:
               
322-684
               

               
Cow position:
               
chr6:23402111-23401752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 49
               

               
Conread position:
               
322-697
               

               
Cow position:
               
chr6:10225761-10225396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 106
               

               
Conread position:
               
322-697
               

               
Cow position:
               
chr6:35725973-35726343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
19, 156
               

               
Conread position:
               
323-668
               

               
Cow position:
               
chr6:16261665-16262008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 100
               

               
Conread position:
               
323-697
               

               
Cow position:
               
chr6:17704698-17705093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 222
               

               
Conread position:
               
324-537
               

               
Cow position:
               
chr6:44127486-44127705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
324-683
               

               
Cow position:
               
chr6:25615222-25614848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 280
               

               
Conread position:
               
326-678
               

               
Cow position:
               
chr6:5330306-5330651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
169, 15
               

               
Conread position:
               
326-696
               

               
Cow position:
               
chr6:51526375-51526747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
18, 123
               

               
Conread position:
               
327-597
               

               
Cow position:
               
chr6:12845262-12845532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 127
               

               
Conread position:
               
328-617
               

               
Cow position:
               
chr6:58597620-58597333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 83
               

               
Conread position:
               
328-641
               

               
Cow position:
               
chr6:21514735-21514412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
16, 109
               

               
Conread position:
               
332-678
               

               
Cow position:
               
chr6:46173370-46173021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
332-685
               

               
Cow position:
               
chr6:61524310-61523971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 82
               

               
Conread position:
               
332-692
               

               
Cow position:
               
chr6:10039609-10039978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
12, 78
               

               
Conread position:
               
337-696
               

               
Cow position:
               
chr6:60274111-60273755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
341-601
               

               
Cow position:
               
chr6:20196393-20196146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
154, 37
               

               
Conread position:
               
341-626
               

               
Cow position:
               
chr6:3592301-3592579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
341-683
               

               
Cow position:
               
chr6:27240106-27239762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
133, 105
               

               
Conread position:
               
341-697
               

               
Cow position:
               
chr6:59603307-59602959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 36
               

               
Conread position:
               
341-697
               

               
Cow position:
               
chr6:61168675-61169008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 59
               

               
Conread position:
               
342-684
               

               
Cow position:
               
chr6:16266620-16266974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
342-694
               

               
Cow position:
               
chr6:17794855-17794502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
342-696
               

               
Cow position:
               
chr6:59718697-59719068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 78
               

               
Conread position:
               
343-548
               

               
Cow position:
               
chr6:54208237-54208031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
343-661
               

               
Cow position:
               
chr6:9719021-9718697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
33, 5
               

               
Conread position:
               
344-680
               

               
Cow position:
               
chr6:13564987-13565324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
102, 151
               

               
Conread position:
               
345-600
               

               
Cow position:
               
chr6:66375426-66375177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 94
               

               
Conread position:
               
345-615
               

               
Cow position:
               
chr6:7119706-7119450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
152, 38
               

               
Conread position:
               
345-696
               

               
Cow position:
               
chr6:68376417-68376061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 22
               

               
Conread position:
               
346-679
               

               
Cow position:
               
chr6:44867636-44867309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
19, 96
               

               
Conread position:
               
347-694
               

               
Cow position:
               
chr6:17549075-17548713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
99, 190
               

               
Conread position:
               
349-684
               

               
Cow position:
               
chr6:143460-143135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 19
               

               
Conread position:
               
350-596
               

               
Cow position:
               
chr6:17245697-17245466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 8
               

               
Conread position:
               
350-630
               

               
Cow position:
               
chr6:10487496-10487765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
144, 98
               

               
Conread position:
               
350-697
               

               
Cow position:
               
chr6:19045533-19045884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
17, 117
               

               
Conread position:
               
352-684
               

               
Cow position:
               
chr6:37332018-37332354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 64
               

               
Conread position:
               
353-595
               

               
Cow position:
               
chr6:6673014-6673258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 96
               

               
Conread position:
               
353-696
               

               
Cow position:
               
chr6:24110196-24110541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 54
               

               
Conread position:
               
355-626
               

               
Cow position:
               
chr6:37462936-37463205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
105, 52
               

               
Conread position:
               
358-684
               

               
Cow position:
               
chr6:46274211-46273890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
139, 50
               

               
Conread position:
               
359-541
               

               
Cow position:
               
chr6:54365085-54364895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 182
               

               
Conread position:
               
360-508
               

               
Cow position:
               
chr6:63169083-63168930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
360-640
               

               
Cow position:
               
chr6:55205393-55205114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
134, 79
               

               
Conread position:
               
362-618
               

               
Cow position:
               
chr6:23466108-23465859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
132, 84
               

               
Conread position:
               
362-641
               

               
Cow position:
               
chr6:60516749-60517032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
135, 30
               

               
Conread position:
               
362-686
               

               
Cow position:
               
chr6:2623703-2624004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
314, 80
               
UCSC Genome Browser

               
Conread position:
               
363-685
               

               
Cow position:
               
chr6:67281819-67282128 (view  custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
132, 62
               
UCSC Genome Browser

               
               
               
Conread position:
363-694

               
               
               
Cow position:
chr6:16288130-16287814 (view  custom track)

               
               
               
Alignm length:
335

               
               
               
Alignm identity:
237

               
               
               
Alignm E-value:
9.99995e-41

               
               
               
Alignm gaps (pig, cow):
132, 79
UCSC Genome Browser

               
               
               
Conread position:
363-697

               
               
               
Cow position:
chr6:33509712-33510042 (view  custom track)

               
               
               
Alignm length:
340

               
               
               
Alignm identity:
223

               
               
               
Alignm E-value:
1e-30

               
               
               
Alignm gaps (pig, cow):
112, 78

               
               
               Conread position:364-597
               
               
               Cow position:chr6:33929626-33929394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):97, 7

               
               
               Conread position:364-676
               
               
               Cow position:chr6:22985935-22985627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:364-684
               
               
               Cow position:chr6:24536618-24536281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:365-601
               
               
               Cow position:chr6:11830118-11830344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:365-694
               
               
               Cow position:chr6:694223-693892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 49

               
               
               Conread position:367-682
               
               
               Cow position:chr6:17068723-17068414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 80

               
               
               Conread position:368-542
               
               
               Cow position:chr6:36493622-36493443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):128, 167

               
               
               Conread position:368-681
               
               
               Cow position:chr6:24339211-24339529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:369-621
               
               
               Cow position:chr6:29248419-29248653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:371-617
               
               
               Cow position:chr6:28179016-28178782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 52

               
               
               Conread position:372-633
               
               
               Cow position:chr6:67643760-67643503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 74

               
               
               Conread position:372-660
               
               
               Cow position:chr6:51294215-51294503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:372-670
               
               
               Cow position:chr6:22215537-22215233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):59, 48

               
               
               Conread position:373-684
               
               
               Cow position:chr6:23353485-23353801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):208, 75

               
               
               Conread position:374-598
               
               
               Cow position:chr6:59770160-59770376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):120, 78

               
               
               Conread position:375-546
               
               
               Cow position:chr6:7170413-7170246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 64

               
               
               Conread position:375-614
               
               
               Cow position:chr6:61142630-61142391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):119, 67

               
               
               Conread position:375-618
               
               
               Cow position:chr6:36284176-36284415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 50

               
               
               Conread position:375-647
               
               
               Cow position:chr6:31078936-31078667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:375-678
               
               
               Cow position:chr6:9302782-9302486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:375-687
               
               
               Cow position:chr6:37395474-37395159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 162

               
               
               Conread position:376-542
               
               
               Cow position:chr6:67615496-67615332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):119, 74

               
               
               Conread position:376-647
               
               
               Cow position:chr6:2153657-2153395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):119, 16

               
               
               Conread position:376-689
               
               
               Cow position:chr6:18118117-18117802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 78

               
               
               Conread position:377-618
               
               
               Cow position:chr6:35896404-35896180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:377-696
               
               
               Cow position:chr6:60468173-60468485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 65

               
               
               Conread position:378-697
               
               
               Cow position:chr6:5845235-5844907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:381-673
               
               
               Cow position:chr6:68816107-68816403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 5

               
               
               Conread position:382-697
               
               
               Cow position:chr6:51530245-51529935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:383-676
               
               
               Cow position:chr6:18144135-18144436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):112, 33

               
               
               Conread position:385-674
               
               
               Cow position:chr6:2584885-2585173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:387-615
               
               
               Cow position:chr6:16352401-16352183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:389-602
               
               
               Cow position:chr6:69500412-69500619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):108, 59

               
               
               Conread position:392-616
               
               
               Cow position:chr6:32809227-32809453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:392-689
               
               
               Cow position:chr6:68652402-68652117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:392-695
               
               
               Cow position:chr6:56986695-56986393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:393-680
               
               
               Cow position:chr6:48468956-48469245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):102, 27

               
               
               Conread position:395-697
               
               
               Cow position:chr6:3350973-3351284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):46, 146

               
               
               Conread position:396-591
               
               
               Cow position:chr6:32853141-32853334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:396-609
               
               
               Cow position:chr6:1422440-1422651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 43

               
               
               Conread position:396-684
               
               
               Cow position:chr6:2078865-2078573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 141

               
               
               Conread position:396-696
               
               
               Cow position:chr6:55417572-55417276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:398-618
               
               
               Cow position:chr6:55535792-55535578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:398-687
               
               
               Cow position:chr6:67451415-67451126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 17

               
               
               Conread position:399-696
               
               
               Cow position:chr6:7801436-7801143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):49, 55

               
               
               Conread position:402-599
               
               
               Cow position:chr6:32517139-32516955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:403-693
               
               
               Cow position:chr6:66570399-66570678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):57, 35

               
               
               Conread position:406-615
               
               
               Cow position:chr6:34119390-34119183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):91, 50

               
               
               Conread position:408-687
               
               
               Cow position:chr6:60266215-60265923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):89, 39

               
               
               Conread position:409-601
               
               
               Cow position:chr6:19259377-19259183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:410-618
               
               
               Cow position:chr6:19131398-19131604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:411-684
               
               
               Cow position:chr6:69334342-69334073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 16

               
               
               Conread position:411-694
               
               
               Cow position:chr6:50504423-50504707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:414-555
               
               
               Cow position:chr6:12197150-12197291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 119

               
               
               Conread position:414-607
               
               
               Cow position:chr6:57287687-57287500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:414-694
               
               
               Cow position:chr6:67451673-67451411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 9

               
               
               Conread position:415-695
               
               
               Cow position:chr6:63065798-63066090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:416-604
               
               
               Cow position:chr6:68685529-68685713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 11

               
               
               Conread position:416-677
               
               
               Cow position:chr6:49437307-49437567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:416-684
               
               
               Cow position:chr6:18904078-18903794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:416-694
               
               
               Cow position:chr6:48097627-48097350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:416-694
               
               
               Cow position:chr6:62056587-62056864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 37

               
               
               Conread position:420-608
               
               
               Cow position:chr6:53089986-53090172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:420-677
               
               
               Cow position:chr6:57089174-57089440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:420-686
               
               
               Cow position:chr6:21293518-21293253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):77, 30

               
               
               Conread position:423-695
               
               
               Cow position:chr6:53546017-53546283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 21

               
               
               Conread position:424-679
               
               
               Cow position:chr6:58725358-58725605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):71, 24

               
               
               Conread position:425-624
               
               
               Cow position:chr6:54471951-54471749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:428-672
               
               
               Cow position:chr6:4702838-4702587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:430-618
               
               
               Cow position:chr6:60451410-60451602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:431-684
               
               
               Cow position:chr6:13653340-13653589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:431-696
               
               
               Cow position:chr6:66978856-66979126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:433-607
               
               
               Cow position:chr6:67806027-67805852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 103

               
               
               Conread position:437-683
               
               
               Cow position:chr6:21467275-21467028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:438-679
               
               
               Cow position:chr6:57079417-57079664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:438-680
               
               
               Cow position:chr6:21475720-21475964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 99

               
               
               Conread position:439-673
               
               
               Cow position:chr6:48379619-48379379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:439-684
               
               
               Cow position:chr6:1475340-1475580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:439-696
               
               
               Cow position:chr6:57320587-57320344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):58, 10

               
               
               Conread position:443-695
               
               
               Cow position:chr6:26155148-26155399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:448-675
               
               
               Cow position:chr6:12623519-12623743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:448-693
               
               
               Cow position:chr6:48435839-48436083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:450-697
               
               
               Cow position:chr6:21470423-21470177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:452-601
               
               
               Cow position:chr6:43651760-43651909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:452-697
               
               
               Cow position:chr6:43787905-43787652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 82

               
               
               Conread position:453-610
               
               
               Cow position:chr6:1002254-1002097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):44, 83

               
               
               Conread position:453-693
               
               
               Cow position:chr6:66839207-66839443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):190, 69

               
               
               Conread position:454-697
               
               
               Cow position:chr6:25435024-25434770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):45, 66

               
               
               Conread position:455-663
               
               
               Cow position:chr6:1871187-1870975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:455-681
               
               
               Cow position:chr6:1941821-1941594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:455-694
               
               
               Cow position:chr6:30023896-30024130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:456-601
               
               
               Cow position:chr6:18422978-18422833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:456-618
               
               
               Cow position:chr6:35964533-35964361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 89

               
               
               Conread position:456-620
               
               
               Cow position:chr6:7568135-7568299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 80

               
               
               Conread position:456-638
               
               
               Cow position:chr6:69153425-69153603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:456-678
               
               
               Cow position:chr6:61109799-61110019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:456-678
               
               
               Cow position:chr6:67069803-67069578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 31

               
               
               Conread position:456-694
               
               
               Cow position:chr6:42034784-42035023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 80

               
               
               Conread position:456-696
               
               
               Cow position:chr6:60850713-60850953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:456-697
               
               
               Cow position:chr6:29775634-29775871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:456-697
               
               
               Cow position:chr6:35171617-35171855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:457-676
               
               
               Cow position:chr6:61575838-61576040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:457-684
               
               
               Cow position:chr6:5820234-5820017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:457-697
               
               
               Cow position:chr6:58227385-58227650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 258

               
               
               Conread position:458-616
               
               
               Cow position:chr6:61569646-61569800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:458-639
               
               
               Cow position:chr6:31865112-31865287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:458-684
               
               
               Cow position:chr6:54127799-54127578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:458-696
               
               
               Cow position:chr6:58459735-58459970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 77

               
               
               Conread position:460-692
               
               
               Cow position:chr6:1866748-1866981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):37, 24

               
               
               Conread position:464-680
               
               
               Cow position:chr6:66259749-66259976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:466-697
               
               
               Cow position:chr6:62078945-62079180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:467-663
               
               
               Cow position:chr6:21066861-21066665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 69

               
               
               Conread position:468-697
               
               
               Cow position:chr6:16090927-16091153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):29, 67

               
               
               Conread position:470-694
               
               
               Cow position:chr6:36225135-36225363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:473-679
               
               
               Cow position:chr6:50771330-50771123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):170, 25

               
               
               Conread position:473-684
               
               
               Cow position:chr6:36643463-36643244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:473-697
               
               
               Cow position:chr6:42728674-42728903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:474-646
               
               
               Cow position:chr6:54349724-54349896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:475-685
               
               
               Cow position:chr6:23938091-23938295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 60

               
               
               Conread position:477-683
               
               
               Cow position:chr6:12761312-12761522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:477-684
               
               
               Cow position:chr6:5601735-5601943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:477-684
               
               
               Cow position:chr6:34569440-34569659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:477-695
               
               
               Cow position:chr6:22876898-22876671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:478-697
               
               
               Cow position:chr6:3936818-3937045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 32

               
               
               Conread position:482-680
               
               
               Cow position:chr6:41226792-41226608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:482-693
               
               
               Cow position:chr6:36537323-36537112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:483-617
               
               
               Cow position:chr6:35654511-35654375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:483-695
               
               
               Cow position:chr6:43906645-43906425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:484-615
               
               
               Cow position:chr6:48678647-48678769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:484-692
               
               
               Cow position:chr6:63168722-63168511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):109, 9

               
               
               Conread position:484-697
               
               
               Cow position:chr6:41657307-41657520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:486-617
               
               
               Cow position:chr6:28900368-28900499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:486-676
               
               
               Cow position:chr6:21350991-21350796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:492-667
               
               
               Cow position:chr6:40682615-40682442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):5, 31

               
               
               Conread position:492-681
               
               
               Cow position:chr6:60186614-60186411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):111, 42

               
               
               Conread position:492-695
               
               
               Cow position:chr6:35985088-35984881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):151, 42

               
               
               Conread position:493-668
               
               
               Cow position:chr6:47344649-47344829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:493-679
               
               
               Cow position:chr6:25773166-25772981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):150, 29

               
               
               Conread position:493-684
               
               
               Cow position:chr6:53792419-53792235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):103, 41

               
               
               Conread position:493-692
               
               
               Cow position:chr6:21083491-21083290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):150, 41

               
               
               Conread position:494-697
               
               
               Cow position:chr6:67964007-67963807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:495-618
               
               
               Cow position:chr6:47676068-47676186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:495-678
               
               
               Cow position:chr6:38032909-38033095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:496-611
               
               
               Cow position:chr6:35702292-35702178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:496-680
               
               
               Cow position:chr6:26054852-26054661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:496-680
               
               
               Cow position:chr6:45160005-45159816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):146, 38

               
               
               Conread position:496-684
               
               
               Cow position:chr6:8468718-8468904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):162, 38

               
               
               Conread position:496-684
               
               
               Cow position:chr6:29853012-29852812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:496-694
               
               
               Cow position:chr6:8187137-8186936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):146, 39

               
               
               Conread position:496-694
               
               
               Cow position:chr6:15172618-15172809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 41

               
               
               Conread position:496-695
               
               
               Cow position:chr6:19563431-19563224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:496-695
               
               
               Cow position:chr6:62805695-62805899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:496-697
               
               
               Cow position:chr6:24514493-24514277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:496-697
               
               
               Cow position:chr6:55548481-55548275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):146, 38

               
               
               Conread position:498-694
               
               
               Cow position:chr6:58697577-58697374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):145, 36

               
               
               Conread position:499-591
               
               
               Cow position:chr6:59092052-59092144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:499-679
               
               
               Cow position:chr6:53711458-53711641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):143, 35

               
               
               Conread position:499-684
               
               
               Cow position:chr6:32006399-32006213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):144, 35

               
               
               Conread position:499-685
               
               
               Cow position:chr6:50883620-50883435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):145, 35

               
               
               Conread position:499-695
               
               
               Cow position:chr6:15587539-15587333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:499-697
               
               
               Cow position:chr6:8688791-8688594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):144, 32

               
               
               Conread position:499-697
               
               
               Cow position:chr6:55044586-55044382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):144, 35

               
               
               Conread position:500-644
               
               
               Cow position:chr6:58076450-58076593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:500-683
               
               
               Cow position:chr6:12631558-12631736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):143, 22

               
               
               Conread position:500-684
               
               
               Cow position:chr6:14263834-14263644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):142, 59

               
               
               Conread position:500-685
               
               
               Cow position:chr6:36938924-36939118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):98, 34

               
               
               Conread position:500-694
               
               
               Cow position:chr6:18440421-18440223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):143, 34

               
               
               Conread position:500-694
               
               
               Cow position:chr6:49685875-49686076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):144, 19

               
               
               Conread position:500-694
               
               
               Cow position:chr6:57299815-57300023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:500-695
               
               
               Cow position:chr6:26408448-26408248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):143, 34

               
               
               Conread position:501-668
               
               
               Cow position:chr6:61644801-61644629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):142, 33

               
               
               Conread position:501-680
               
               
               Cow position:chr6:62724613-62724797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:501-692
               
               
               Cow position:chr6:57467654-57467850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):138, 33

               
               
               Conread position:502-684
               
               
               Cow position:chr6:17404619-17404806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):101, 32

               
               
               Conread position:502-685
               
               
               Cow position:chr6:35743039-35743224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:503-688
               
               
               Cow position:chr6:54820891-54821081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):140, 32

               
               
               Conread position:503-697
               
               
               Cow position:chr6:6850381-6850571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:504-680
               
               
               Cow position:chr6:19936509-19936329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):138, 30

               
               
               Conread position:504-684
               
               
               Cow position:chr6:53811643-53811829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:504-695
               
               
               Cow position:chr6:35342121-35341933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:504-696
               
               
               Cow position:chr6:34423398-34423206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:505-683
               
               
               Cow position:chr6:48278831-48278653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:509-684
               
               
               Cow position:chr6:34463522-34463347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:509-685
               
               
               Cow position:chr6:37994274-37994448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):128, 84

               
               
               Conread position:509-697
               
               
               Cow position:chr6:44544083-44543890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:510-694
               
               
               Cow position:chr6:154536-154727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:511-684
               
               
               Cow position:chr6:43540182-43540019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:512-684
               
               
               Cow position:chr6:5600792-5600622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:512-696
               
               
               Cow position:chr6:411147-410964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 23

               
               
               Conread position:512-697
               
               
               Cow position:chr6:14150311-14150124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):131, 22

               
               
               Conread position:513-680
               
               
               Cow position:chr6:16411680-16411852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:513-685
               
               
               Cow position:chr6:36570529-36570710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:513-696
               
               
               Cow position:chr6:66947752-66947562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:513-697
               
               
               Cow position:chr6:15974454-15974269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):126, 21

               
               
               Conread position:513-697
               
               
               Cow position:chr6:31928705-31928896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:514-697
               
               
               Cow position:chr6:62224492-62224678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):80, 20

               
               
               Conread position:515-696
               
               
               Cow position:chr6:54406727-54406554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):128, 11

               
               
               Conread position:515-697
               
               
               Cow position:chr6:36891723-36891902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):93, 10

               
               
               Conread position:516-692
               
               
               Cow position:chr6:4699780-4699956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):127, 18

               
               
               Conread position:517-684
               
               
               Cow position:chr6:7291389-7291554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):126, 18

               
               
               Conread position:517-696
               
               
               Cow position:chr6:8726751-8726932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):126, 18

               
               
               Conread position:518-614
               
               
               Cow position:chr6:61182779-61182684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:518-687
               
               
               Cow position:chr6:55646876-55646703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:519-697
               
               
               Cow position:chr6:16137695-16137510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:519-697
               
               
               Cow position:chr6:17194287-17194479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:522-684
               
               
               Cow position:chr6:14152812-14152646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:527-697
               
               
               Cow position:chr6:54840424-54840242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 8

               
               
               Conread position:531-684
               
               
               Cow position:chr6:16016120-16016280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):112, 48

               
               
               Conread position:532-694
               
               
               Cow position:chr6:21347063-21346902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:533-696
               
               
               Cow position:chr6:54828234-54828064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:533-697
               
               
               Cow position:chr6:37129846-37129691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:535-695
               
               
               Cow position:chr6:47673057-47672901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 66

               
               
               Conread position:535-696
               
               
               Cow position:chr6:38020764-38020929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 158

               
               
               Conread position:536-684
               
               
               Cow position:chr6:66058616-66058466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:539-694
               
               
               Cow position:chr6:23381574-23381409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:543-684
               
               
               Cow position:chr6:59759269-59759413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:543-692
               
               
               Cow position:chr6:30688414-30688258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):7, 135

               
               
               Conread position:549-697
               
               
               Cow position:chr6:31713571-31713732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 148

               
               
               Conread position:567-692
               
               
               Cow position:chr6:38615249-38615380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 45
Show alignments to all cow chromosomes.