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Cow genome map

           
Conread name:
           
Pig3-SRG8016H04
        

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:92510158-92510314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr1:1380190-1380027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr1:2972109-2971947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
143, 52
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr1:23373050-23372889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 54
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr1:43148348-43148515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr1:98594780-98594595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr1:22231840-22231675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
144, 49
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr1:94226355-94226548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 172
               

               
Conread position:
               
2-140
               

               
Cow position:
               
chr1:83222176-83222044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
2-143
               

               
Cow position:
               
chr1:48105237-48105379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
2-147
               

               
Cow position:
               
chr1:1605943-1606084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
143, 49
               

               
Conread position:
               
2-147
               

               
Cow position:
               
chr1:48213957-48214106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
85, 54
               

               
Conread position:
               
2-153
               

               
Cow position:
               
chr1:17317155-17317314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
2-154
               

               
Cow position:
               
chr1:76735291-76735436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
143, 14
               

               
Conread position:
               
2-154
               

               
Cow position:
               
chr1:90267912-90267765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-158
               

               
Cow position:
               
chr1:47886292-47886439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-158
               

               
Cow position:
               
chr1:73719659-73719502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
2-158
               

               
Cow position:
               
chr1:96272829-96272982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
143, 51
               

               
Conread position:
               
2-160
               

               
Cow position:
               
chr1:43352465-43352617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-165
               

               
Cow position:
               
chr1:86340270-86340434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 52
               

               
Conread position:
               
2-167
               

               
Cow position:
               
chr1:43296526-43296687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
143, 51
               

               
Conread position:
               
2-167
               

               
Cow position:
               
chr1:47883407-47883584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
2-167
               

               
Cow position:
               
chr1:54569889-54569730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-167
               

               
Cow position:
               
chr1:76612944-76613103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
2-168
               

               
Cow position:
               
chr1:38419214-38419054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
142, 15
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:852361-852200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:8287442-8287600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
143, 52
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:22824097-22823935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:24656444-24656275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:32014379-32014226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:39683954-39684114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:40181433-40181595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
142, 52
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:46245548-46245710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:54156546-54156704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 53
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:54258757-54258597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:55428765-55428926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:64458160-64457995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:65318765-65318605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
142, 53
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:69411507-69411667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
143, 28
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:72422218-72422378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:72813805-72813646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
143, 33
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:73020474-73020632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
143, 14
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:85712649-85712470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 112
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:87095023-87095184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:88360073-88359908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:95835607-95835768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:100513085-100512927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
143, 52
               

               
Conread position:
               
2-178
               

               
Cow position:
               
chr1:34771311-34771483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
143, 14
               

               
Conread position:
               
2-179
               

               
Cow position:
               
chr1:55357101-55357275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr1:42404337-42404152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr1:90975888-90976081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
52, 102
               

               
Conread position:
               
2-194
               

               
Cow position:
               
chr1:94712975-94713157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
142, 51
               

               
Conread position:
               
2-196
               

               
Cow position:
               
chr1:731782-731971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
143, 14
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chr1:53402971-53402811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
142, 52
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chr1:72068644-72068805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
107, 52
               

               
Conread position:
               
4-137
               

               
Cow position:
               
chr1:95809741-95809612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
4-154
               

               
Cow position:
               
chr1:28563375-28563524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
141, 51
               

               
Conread position:
               
4-154
               

               
Cow position:
               
chr1:67529242-67529100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
141, 44
               

               
Conread position:
               
4-169
               

               
Cow position:
               
chr1:46939691-46939855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
95, 51
               

               
Conread position:
               
4-169
               

               
Cow position:
               
chr1:92684495-92684664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
4-194
               

               
Cow position:
               
chr1:73551316-73551508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
124, 51
               

               
Conread position:
               
6-206
               

               
Cow position:
               
chr1:53540770-53540562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
18-152
               

               
Cow position:
               
chr1:69265000-69264855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
18-157
               

               
Cow position:
               
chr1:63212085-63212217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
127, 36
               

               
Conread position:
               
18-158
               

               
Cow position:
               
chr1:98556946-98557078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
127, 37
               

               
Conread position:
               
18-160
               

               
Cow position:
               
chr1:362930-362790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
127, 29
               

               
Conread position:
               
18-160
               

               
Cow position:
               
chr1:42797051-42796916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
127, 37
               

               
Conread position:
               
18-162
               

               
Cow position:
               
chr1:86579144-86578999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
18-169
               

               
Cow position:
               
chr1:38277854-38277998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
127, 37
               

               
Conread position:
               
18-169
               

               
Cow position:
               
chr1:52496945-52496801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
18-178
               

               
Cow position:
               
chr1:98512113-98511947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
37, 92
               

               
Conread position:
               
18-197
               

               
Cow position:
               
chr1:92095558-92095364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
22-167
               

               
Cow position:
               
chr1:186104-186247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
133, 33
               

               
Conread position:
               
23-143
               

               
Cow position:
               
chr1:77265661-77265538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
23-149
               

               
Cow position:
               
chr1:54645599-54645477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
122, 53
               

               
Conread position:
               
23-158
               

               
Cow position:
               
chr1:101177689-101177556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
23-169
               

               
Cow position:
               
chr1:78810050-78809906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
122, 7
               

               
Conread position:
               
23-195
               

               
Cow position:
               
chr1:31630116-31630281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
24-169
               

               
Cow position:
               
chr1:19304745-19304602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
25-169
               

               
Cow position:
               
chr1:55194063-55194216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
51-160
               

               
Cow position:
               
chr1:49358196-49358087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 5
               

               
Conread position:
               
51-179
               

               
Cow position:
               
chr1:76080953-76080827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
54-169
               

               
Cow position:
               
chr1:95153368-95153252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
54-179
               

               
Cow position:
               
chr1:34318640-34318765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 118
               

               
Conread position:
               
70-169
               

               
Cow position:
               
chr1:92603149-92603049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
76-169
               

               
Cow position:
               
chr1:46100716-46100810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
76-169
               

               
Cow position:
               
chr1:81638672-81638578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
76-176
               

               
Cow position:
               
chr1:97939081-97938979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
329-579
               

               
Cow position:
               
chr1:84815439-84815187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
378-560
               

               
Cow position:
               
chr1:15875912-15875736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
379-581
               

               
Cow position:
               
chr1:852427-852225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
392-559
               

               
Cow position:
               
chr1:87094971-87095137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
393-567
               

               
Cow position:
               
chr1:3271387-3271214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
145, 15
               

               
Conread position:
               
393-567
               

               
Cow position:
               
chr1:73397831-73398005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
395-560
               

               
Cow position:
               
chr1:67529298-67529131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
396-560
               

               
Cow position:
               
chr1:31274750-31274914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
396-560
               

               
Cow position:
               
chr1:67160052-67160214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
396-560
               

               
Cow position:
               
chr1:71119755-71119597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
396-578
               

               
Cow position:
               
chr1:1496294-1496474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
100, 11
               

               
Conread position:
               
396-579
               

               
Cow position:
               
chr1:74083951-74084134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
31, 5
               

               
Conread position:
               
396-586
               

               
Cow position:
               
chr1:53370317-53370135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
397-555
               

               
Cow position:
               
chr1:65160366-65160208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
397-560
               

               
Cow position:
               
chr1:43340397-43340558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
398-560
               

               
Cow position:
               
chr1:38277790-38277952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
398-567
               

               
Cow position:
               
chr1:38419264-38419092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
398-567
               

               
Cow position:
               
chr1:47658585-47658414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
398-567
               

               
Cow position:
               
chr1:72422173-72422340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
399-559
               

               
Cow position:
               
chr1:84595122-84594965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
400-567
               

               
Cow position:
               
chr1:79178864-79178697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
400-584
               

               
Cow position:
               
chr1:52497000-52496822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
401-559
               

               
Cow position:
               
chr1:54156505-54156658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
401-559
               

               
Cow position:
               
chr1:78092273-78092114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
401-560
               

               
Cow position:
               
chr1:42797108-42796953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
401-567
               

               
Cow position:
               
chr1:64803865-64804033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
401-567
               

               
Cow position:
               
chr1:83222220-83222053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
115, 63
               

               
Conread position:
               
402-567
               

               
Cow position:
               
chr1:101866267-101866428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
403-547
               

               
Cow position:
               
chr1:101867879-101867735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
403-559
               

               
Cow position:
               
chr1:20537431-20537282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
403-559
               

               
Cow position:
               
chr1:50854143-50853985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
403-567
               

               
Cow position:
               
chr1:18936606-18936768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 89
               

               
Conread position:
               
403-567
               

               
Cow position:
               
chr1:73374869-73375033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
403-579
               

               
Cow position:
               
chr1:7443211-7443033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
403-579
               

               
Cow position:
               
chr1:89146640-89146818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
405-560
               

               
Cow position:
               
chr1:22824137-22823981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
405-579
               

               
Cow position:
               
chr1:56719569-56719397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 111
               

               
Conread position:
               
407-556
               

               
Cow position:
               
chr1:46245510-46245661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
408-551
               

               
Cow position:
               
chr1:89437503-89437640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
408-555
               

               
Cow position:
               
chr1:1347409-1347554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
408-559
               

               
Cow position:
               
chr1:95835570-95835721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr1:84103833-84103985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
408-560
               

               
Cow position:
               
chr1:92188184-92188033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
408-567
               

               
Cow position:
               
chr1:55428728-55428887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
408-567
               

               
Cow position:
               
chr1:64458198-64458034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
408-567
               

               
Cow position:
               
chr1:95153098-95152940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
408-579
               

               
Cow position:
               
chr1:69411469-69411640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
24, 66
               

               
Conread position:
               
408-586
               

               
Cow position:
               
chr1:71664671-71664845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
409-560
               

               
Cow position:
               
chr1:4391046-4391195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
410-567
               

               
Cow position:
               
chr1:53403009-53402850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
410-567
               

               
Cow position:
               
chr1:83246651-83246494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
410-581
               

               
Cow position:
               
chr1:52435498-52435327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
411-551
               

               
Cow position:
               
chr1:94712941-94713080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
412-560
               

               
Cow position:
               
chr1:98380075-98380221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
413-555
               

               
Cow position:
               
chr1:12222381-12222526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
413-560
               

               
Cow position:
               
chr1:96019448-96019304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
413-567
               

               
Cow position:
               
chr1:100513117-100512964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 117
               

               
Conread position:
               
415-545
               

               
Cow position:
               
chr1:36089998-36090126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
415-551
               

               
Cow position:
               
chr1:47190775-47190910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
415-559
               

               
Cow position:
               
chr1:8778119-8778258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
415-560
               

               
Cow position:
               
chr1:63994340-63994479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
415-560
               

               
Cow position:
               
chr1:69442297-69442442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
415-560
               

               
Cow position:
               
chr1:101883173-101883318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
415-560
               

               
Cow position:
               
chr1:102768393-102768253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
415-567
               

               
Cow position:
               
chr1:4294563-4294413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
415-567
               

               
Cow position:
               
chr1:31801701-31801850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 67
               

               
Conread position:
               
415-567
               

               
Cow position:
               
chr1:73020444-73020593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
102, 43
               

               
Conread position:
               
415-578
               

               
Cow position:
               
chr1:72068616-72068777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
416-560
               

               
Cow position:
               
chr1:47790451-47790590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
416-560
               

               
Cow position:
               
chr1:76222503-76222646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
416-579
               

               
Cow position:
               
chr1:26984228-26984066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
417-557
               

               
Cow position:
               
chr1:92996670-92996812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
418-559
               

               
Cow position:
               
chr1:101280521-101280661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
419-567
               

               
Cow position:
               
chr1:4582764-4582619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
119, 39
               

               
Conread position:
               
419-567
               

               
Cow position:
               
chr1:100823252-100823106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
420-567
               

               
Cow position:
               
chr1:1878236-1878089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
420-567
               

               
Cow position:
               
chr1:19599149-19599292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
420-567
               

               
Cow position:
               
chr1:43352440-43352587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
420-579
               

               
Cow position:
               
chr1:3666820-3666974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
120, 31
               

               
Conread position:
               
420-580
               

               
Cow position:
               
chr1:6790987-6790827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
118, 106
               

               
Conread position:
               
420-580
               

               
Cow position:
               
chr1:54569914-54569754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
420-581
               

               
Cow position:
               
chr1:22231864-22231703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
421-555
               

               
Cow position:
               
chr1:3324084-3323952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
421-560
               

               
Cow position:
               
chr1:36018572-36018707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
422-560
               

               
Cow position:
               
chr1:42482411-42482273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
423-560
               

               
Cow position:
               
chr1:41022626-41022495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
423-567
               

               
Cow position:
               
chr1:65318787-65318644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
423-580
               

               
Cow position:
               
chr1:31794798-31794953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
425-581
               

               
Cow position:
               
chr1:96558638-96558794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
435-551
               

               
Cow position:
               
chr1:4618544-4618658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
435-559
               

               
Cow position:
               
chr1:77739922-77739799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
435-560
               

               
Cow position:
               
chr1:79719006-79718882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
435-567
               

               
Cow position:
               
chr1:50765812-50765680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
435-567
               

               
Cow position:
               
chr1:90267922-90267789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
435-571
               

               
Cow position:
               
chr1:77704743-77704880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
435-579
               

               
Cow position:
               
chr1:68710482-68710335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
435-580
               

               
Cow position:
               
chr1:10523897-10523756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
436-567
               

               
Cow position:
               
chr1:64706099-64705968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
437-557
               

               
Cow position:
               
chr1:6381972-6381850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
437-560
               

               
Cow position:
               
chr1:8134121-8133999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
437-567
               

               
Cow position:
               
chr1:5751511-5751382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
437-567
               

               
Cow position:
               
chr1:92524213-92524083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
439-580
               

               
Cow position:
               
chr1:54258763-54258621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
442-567
               

               
Cow position:
               
chr1:72813808-72813685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
442-584
               

               
Cow position:
               
chr1:6039186-6039325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
443-556
               

               
Cow position:
               
chr1:23633737-23633850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.