Cow genome map

Conread name: Pig3-SRG8016H04

Conread position: 1-160
Cow position: chr12:26749805-26749957 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 144, 25

Conread position: 1-169
Cow position: chr12:26147023-26147184 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 144, 54

Conread position: 1-174
Cow position: chr12:15832352-15832175 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 54, 15

Conread position: 1-215
Cow position: chr12:22341404-22341185 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 147
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 2-150
Cow position: chr12:23764643-23764489 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 2-150
Cow position: chr12:41420715-41420861 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 143, 53

Conread position: 2-160
Cow position: chr12:22323123-22323279 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 142, 55

Conread position: 2-165
Cow position: chr12:22048068-22047911 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 143, 53

Conread position: 2-167
Cow position: chr12:3454841-3454682 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 143, 15

Conread position: 2-167
Cow position: chr12:31883490-31883326 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 2-169
Cow position: chr12:3675370-3675541 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 108

Conread position: 2-169
Cow position: chr12:8943071-8943238 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 81, 46

Conread position: 2-169
Cow position: chr12:12699494-12699656 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 142, 53

Conread position: 2-169
Cow position: chr12:14223127-14222967 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr12:23574914-23574749 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 145, 52

Conread position: 2-169
Cow position: chr12:26357223-26357385 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 143, 48

Conread position: 2-169
Cow position: chr12:27430664-27430492 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 46

Conread position: 2-169
Cow position: chr12:30042872-30042711 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 143, 51

Conread position: 2-171
Cow position: chr12:32051664-32051491 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 93

Conread position: 2-174
Cow position: chr12:7110352-7110182 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 64, 53

Conread position: 2-176
Cow position: chr12:25456565-25456390 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 160

Conread position: 2-178
Cow position: chr12:12301071-12300896 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 143, 53

Conread position: 2-195
Cow position: chr12:29057534-29057351 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 143, 53

Conread position: 2-195
Cow position: chr12:37993578-37993770 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 53, 28

Conread position: 3-169
Cow position: chr12:44013446-44013611 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 142, 30

Conread position: 4-169
Cow position: chr12:33976345-33976185 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 141, 53

Conread position: 5-169
Cow position: chr12:20355364-20355201 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 140, 50

Conread position: 6-169
Cow position: chr12:21780304-21780148 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 139, 49

Conread position: 18-169
Cow position: chr12:35137049-35136904 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 123, 37

Conread position: 18-169
Cow position: chr12:42698105-42698260 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 18-195
Cow position: chr12:29675011-29675180 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 127, 37

Conread position: 23-165
Cow position: chr12:41159713-41159577 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 122, 32

Conread position: 23-169
Cow position: chr12:3879837-3879994 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 23-171
Cow position: chr12:30919557-30919408 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 122, 32

Conread position: 23-175
Cow position: chr12:28598396-28598243 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 27

Conread position: 23-190
Cow position: chr12:42143303-42143123 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 23-201
Cow position: chr12:39149926-39150094 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 122, 32

Conread position: 24-165
Cow position: chr12:46333471-46333335 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 121, 32

Conread position: 54-169
Cow position: chr12:22894271-22894156 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 88, 48

Conread position: 54-193
Cow position: chr12:26962530-26962670 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 91, 103

Conread position: 62-182
Cow position: chr12:18943564-18943686 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 76-176
Cow position: chr12:43854973-43854872 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 389-567
Cow position: chr12:39149853-39150027 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 392-543
Cow position: chr12:42749640-42749486 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 27, 5

Conread position: 395-567
Cow position: chr12:12699445-12699616 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 395-580
Cow position: chr12:27663805-27663981 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 396-560
Cow position: chr12:35368839-35368674 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 89

Conread position: 396-567
Cow position: chr12:18103424-18103587 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 397-567
Cow position: chr12:35310494-35310661 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 141, 11

Conread position: 398-555
Cow position: chr12:6958411-6958256 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 17, 41

Conread position: 398-560
Cow position: chr12:16386266-16386425 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 398-579
Cow position: chr12:3454887-3454707 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 118, 17

Conread position: 399-585
Cow position: chr12:29674950-29675133 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 401-554
Cow position: chr12:37718582-37718733 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 401-554
Cow position: chr12:37742487-37742336 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 401-556
Cow position: chr12:23106123-23105973 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 401-567
Cow position: chr12:40910095-40910260 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 26, 90

Conread position: 402-506
Cow position: chr12:23587687-23587583 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 403-559
Cow position: chr12:14360829-14360675 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 404-541
Cow position: chr12:45135822-45135959 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 404-564
Cow position: chr12:46449052-46448899 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 404-581
Cow position: chr12:22752817-22752636 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 406-567
Cow position: chr12:43427615-43427777 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 115
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 407-567
Cow position: chr12:9482121-9482280 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 111, 24

Conread position: 408-544
Cow position: chr12:7086362-7086226 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 408-559
Cow position: chr12:38126339-38126491 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 408-560
Cow position: chr12:35137100-35136950 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 408-586
Cow position: chr12:45782404-45782234 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 95, 0

Conread position: 409-560
Cow position: chr12:24396985-24397132 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 6, 23

Conread position: 410-559
Cow position: chr12:42967173-42967028 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 414-567
Cow position: chr12:10942468-10942312 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 92, 23

Conread position: 414-585
Cow position: chr12:44892381-44892214 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 415-532
Cow position: chr12:6206508-6206391 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 415-556
Cow position: chr12:25193215-25193074 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 415-559
Cow position: chr12:43930926-43930782 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 63

Conread position: 415-560
Cow position: chr12:9055242-9055387 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 415-560
Cow position: chr12:43619454-43619312 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 140, 11

Conread position: 415-567
Cow position: chr12:4720118-4719972 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 415-567
Cow position: chr12:14223157-14223006 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 97, 0

Conread position: 415-567
Cow position: chr12:22323093-22323249 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 81, 0

Conread position: 415-567
Cow position: chr12:26670242-26670088 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 415-579
Cow position: chr12:38031969-38032127 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 416-559
Cow position: chr12:29966278-29966135 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 416-559
Cow position: chr12:30042901-30042758 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 125, 114

Conread position: 416-560
Cow position: chr12:13988547-13988401 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 92, 0

Conread position: 416-579
Cow position: chr12:31269333-31269167 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 14, 50

Conread position: 419-586
Cow position: chr12:26749782-26749944 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 420-556
Cow position: chr12:10456311-10456174 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 420-556
Cow position: chr12:44576411-44576273 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 66, 61

Conread position: 420-559
Cow position: chr12:10827955-10827818 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 102, 0

Conread position: 420-567
Cow position: chr12:4093600-4093747 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 422-567
Cow position: chr12:43974459-43974314 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 423-551
Cow position: chr12:1089224-1089352 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 423-551
Cow position: chr12:25299527-25299400 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 423-567
Cow position: chr12:39320556-39320413 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 424-567
Cow position: chr12:22048089-22047946 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 426-567
Cow position: chr12:35240940-35241080 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 103, 0

Conread position: 435-551
Cow position: chr12:37945792-37945907 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 92, 54

Conread position: 437-560
Cow position: chr12:23939371-23939250 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 437-560
Cow position: chr12:40157876-40157993 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 0

Show alignments to all cow chromosomes.