Cow genome map

Conread name: Pig3-SRG8016H04

Conread position: 1-159
Cow position: chr14:13516133-13515984 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 1-165
Cow position: chr14:4282651-4282492 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 2-148
Cow position: chr14:39097364-39097505 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 112, 52

Conread position: 2-152
Cow position: chr14:27364437-27364581 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 143, 53

Conread position: 2-153
Cow position: chr14:47200274-47200122 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 86

Conread position: 2-154
Cow position: chr14:7271398-7271247 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 142, 53

Conread position: 2-158
Cow position: chr14:10078114-10078275 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 2-158
Cow position: chr14:39423035-39422875 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 2-160
Cow position: chr14:21963980-21964146 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 137
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 53, 13

Conread position: 2-165
Cow position: chr14:39041219-39041384 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 63, 53

Conread position: 2-167
Cow position: chr14:28924025-28924184 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 143, 55

Conread position: 2-169
Cow position: chr14:8027707-8027542 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr14:9770110-9769938 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 2-169
Cow position: chr14:10920708-10920545 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 140, 53

Conread position: 2-169
Cow position: chr14:18941428-18941268 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 143, 51

Conread position: 2-169
Cow position: chr14:20070922-20071089 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 53, 16

Conread position: 2-169
Cow position: chr14:22916435-22916273 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 34

Conread position: 2-169
Cow position: chr14:34775889-34775728 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 143, 55

Conread position: 2-169
Cow position: chr14:35381449-35381608 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 143, 55

Conread position: 2-169
Cow position: chr14:37436862-37436692 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 55, 0

Conread position: 2-169
Cow position: chr14:37884072-37883898 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 14

Conread position: 2-176
Cow position: chr14:45052298-45052469 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 143, 53

Conread position: 2-193
Cow position: chr14:35421227-35421038 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 57

Conread position: 2-206
Cow position: chr14:30023340-30023149 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 143, 56

Conread position: 3-169
Cow position: chr14:8083057-8083216 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 142, 52

Conread position: 3-169
Cow position: chr14:24921959-24922115 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 4-160
Cow position: chr14:42440059-42439900 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 52, 61

Conread position: 4-169
Cow position: chr14:20481990-20481825 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 49

Conread position: 4-174
Cow position: chr14:5959131-5958964 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 138, 51

Conread position: 4-174
Cow position: chr14:22941878-22941709 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 151

Conread position: 17-169
Cow position: chr14:27303524-27303676 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 128, 38

Conread position: 18-143
Cow position: chr14:12137890-12138008 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 18-169
Cow position: chr14:18412718-18412573 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 127, 37

Conread position: 18-169
Cow position: chr14:19129365-19129524 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 18-169
Cow position: chr14:27076842-27076995 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 18-169
Cow position: chr14:27823305-27823450 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 127, 37

Conread position: 18-178
Cow position: chr14:4848221-4848375 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 127, 33

Conread position: 23-160
Cow position: chr14:40952147-40952280 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 122, 34

Conread position: 23-165
Cow position: chr14:37447587-37447449 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 122, 32

Conread position: 23-167
Cow position: chr14:24981325-24981476 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 23-176
Cow position: chr14:25778969-25779128 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 40-162
Cow position: chr14:25912540-25912662 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 105, 5

Conread position: 48-179
Cow position: chr14:24806494-24806625 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 97, 9

Conread position: 56-169
Cow position: chr14:42436929-42437043 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 74-169
Cow position: chr14:3943628-3943532 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 80-173
Cow position: chr14:40806683-40806590 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 65, 83

Conread position: 82-178
Cow position: chr14:41267802-41267703 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 387-584
Cow position: chr14:28304985-28304789 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 155, 0

Conread position: 390-567
Cow position: chr14:18941477-18941306 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 394-566
Cow position: chr14:28465406-28465237 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 395-567
Cow position: chr14:5668310-5668139 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 121
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 17, 26

Conread position: 396-560
Cow position: chr14:3949291-3949129 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 22

Conread position: 396-567
Cow position: chr14:12071717-12071545 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 120
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 397-556
Cow position: chr14:36723222-36723378 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 397-579
Cow position: chr14:1708851-1708665 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 14, 136

Conread position: 398-551
Cow position: chr14:18270172-18270324 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 8, 97

Conread position: 398-560
Cow position: chr14:23078979-23078820 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 34

Conread position: 399-560
Cow position: chr14:15944854-15944691 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 401-560
Cow position: chr14:13385182-13385340 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 124, 0

Conread position: 401-560
Cow position: chr14:16770050-16769893 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 113
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 402-567
Cow position: chr14:35381408-35381570 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 402-567
Cow position: chr14:38144296-38144128 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 402-581
Cow position: chr14:8083016-8083191 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 403-544
Cow position: chr14:39097322-39097463 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 403-579
Cow position: chr14:33457227-33457052 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 120, 0

Conread position: 405-555
Cow position: chr14:6389063-6388918 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 133, 43

Conread position: 405-556
Cow position: chr14:20016891-20016739 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 407-560
Cow position: chr14:11470329-11470176 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 119

Conread position: 408-551
Cow position: chr14:14393705-14393845 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 14, 41

Conread position: 408-555
Cow position: chr14:28378182-28378326 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 408-567
Cow position: chr14:13516169-13516010 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 408-567
Cow position: chr14:28923990-28924147 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 408-581
Cow position: chr14:24921920-24922093 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 109

Conread position: 408-585
Cow position: chr14:5044499-5044668 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 409-559
Cow position: chr14:45955112-45955262 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 45, 22

Conread position: 409-560
Cow position: chr14:20010686-20010533 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 111
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 409-567
Cow position: chr14:30023376-30023218 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 410-568
Cow position: chr14:5556083-5556238 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 415-533
Cow position: chr14:23100443-23100560 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 415-550
Cow position: chr14:25517117-25516983 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 114, 0

Conread position: 415-551
Cow position: chr14:26115889-26116025 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 16

Conread position: 415-554
Cow position: chr14:11981294-11981433 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 415-556
Cow position: chr14:18412764-18412623 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 415-567
Cow position: chr14:27364407-27364559 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 415-579
Cow position: chr14:8949478-8949641 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 13, 82

Conread position: 415-579
Cow position: chr14:31130547-31130384 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 116
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 415-579
Cow position: chr14:40230805-40230644 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 415-581
Cow position: chr14:21593171-21593010 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 415-581
Cow position: chr14:44713245-44713412 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 115

Conread position: 415-586
Cow position: chr14:35421257-35421086 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 104

Conread position: 416-560
Cow position: chr14:10920737-10920591 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 102, 0

Conread position: 416-560
Cow position: chr14:12137848-12137989 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 0

Conread position: 416-567
Cow position: chr14:11043664-11043512 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 420-560
Cow position: chr14:2975250-2975112 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 420-560
Cow position: chr14:27823267-27823404 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 422-551
Cow position: chr14:7342302-7342426 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 422-559
Cow position: chr14:29964854-29964991 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 424-567
Cow position: chr14:15796084-15795941 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 427-580
Cow position: chr14:29282594-29282747 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 435-555
Cow position: chr14:29592866-29592745 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 435-560
Cow position: chr14:23419643-23419768 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 437-559
Cow position: chr14:20466788-20466908 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 437-560
Cow position: chr14:24543723-24543599 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 17, 0

Show alignments to all cow chromosomes.