Cow genome map

Conread name: Pig3-SRG8016H04

Conread position: 1-158
Cow position: chr15:44089259-44089109 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 144, 50

Conread position: 1-179
Cow position: chr15:22984474-22984648 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 82

Conread position: 1-214
Cow position: chr15:17227023-17226813 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 141, 54

Conread position: 2-118
Cow position: chr15:37717258-37717143 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 2-148
Cow position: chr15:12034788-12034641 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 88, 52

Conread position: 2-153
Cow position: chr15:32324301-32324156 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 143, 48

Conread position: 2-160
Cow position: chr15:53116397-53116559 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 2-165
Cow position: chr15:10073863-10074023 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 143, 13

Conread position: 2-168
Cow position: chr15:12357514-12357681 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 53, 28

Conread position: 2-168
Cow position: chr15:30471072-30470908 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 143, 49

Conread position: 2-169
Cow position: chr15:2141415-2141238 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 2-169
Cow position: chr15:4248055-4248213 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 142, 48

Conread position: 2-169
Cow position: chr15:4500605-4500768 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 143, 48

Conread position: 2-169
Cow position: chr15:9465581-9465742 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr15:17162085-17162260 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 51, 19

Conread position: 2-169
Cow position: chr15:20534546-20534385 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr15:31928991-31928831 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 54

Conread position: 2-169
Cow position: chr15:34207295-34207122 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 15

Conread position: 2-169
Cow position: chr15:38860225-38860063 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 143, 55

Conread position: 2-169
Cow position: chr15:43626372-43626534 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 142, 53

Conread position: 2-170
Cow position: chr15:12045634-12045471 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 91, 51

Conread position: 2-171
Cow position: chr15:21803758-21803589 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 112, 52

Conread position: 2-174
Cow position: chr15:21520049-21520217 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 145, 55

Conread position: 2-176
Cow position: chr15:8665700-8665527 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 140, 53

Conread position: 2-182
Cow position: chr15:5072191-5072006 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 2-186
Cow position: chr15:16644881-16644708 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 143, 38

Conread position: 2-195
Cow position: chr15:20459404-20459217 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 143, 53

Conread position: 2-197
Cow position: chr15:5964206-5964007 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 16, 27

Conread position: 2-205
Cow position: chr15:52791847-52792040 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 142, 52

Conread position: 2-213
Cow position: chr15:12722991-12723197 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 143, 53

Conread position: 4-157
Cow position: chr15:5522856-5523010 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 97, 51

Conread position: 4-165
Cow position: chr15:38883051-38883210 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 116
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 141, 51

Conread position: 5-166
Cow position: chr15:5409003-5408835 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 18-158
Cow position: chr15:14868626-14868486 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 124, 37

Conread position: 18-169
Cow position: chr15:5726235-5726390 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 66, 37

Conread position: 23-154
Cow position: chr15:52432266-52432393 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 122, 32

Conread position: 23-169
Cow position: chr15:20487282-20487138 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 122, 33

Conread position: 23-169
Cow position: chr15:28924830-28924690 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 122, 45

Conread position: 23-169
Cow position: chr15:42190358-42190510 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 32, 140

Conread position: 23-193
Cow position: chr15:31024904-31025081 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 153

Conread position: 54-167
Cow position: chr15:22871563-22871677 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 91, 74

Conread position: 54-169
Cow position: chr15:39316893-39316777 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 91, 0

Conread position: 56-169
Cow position: chr15:12870913-12870799 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 74-169
Cow position: chr15:14176530-14176434 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 84
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 388-535
Cow position: chr15:10511879-10512025 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 131

Conread position: 393-567
Cow position: chr15:14760786-14760611 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 395-567
Cow position: chr15:36435058-36435231 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 12

Conread position: 397-585
Cow position: chr15:2968196-2968379 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 397-585
Cow position: chr15:39405600-39405789 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 22, 129

Conread position: 399-560
Cow position: chr15:21822067-21821905 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 401-559
Cow position: chr15:15154163-15154318 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 33, 7

Conread position: 401-560
Cow position: chr15:12045678-12045518 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 18, 35

Conread position: 402-567
Cow position: chr15:33784960-33784799 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 45

Conread position: 402-567
Cow position: chr15:37070022-37069860 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 403-567
Cow position: chr15:608010-608172 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 404-584
Cow position: chr15:21941982-21941802 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 408-540
Cow position: chr15:15147338-15147206 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 408-551
Cow position: chr15:7751043-7750902 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 27

Conread position: 408-557
Cow position: chr15:36904172-36904322 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 46, 0

Conread position: 408-567
Cow position: chr15:18763168-18763010 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 107, 10

Conread position: 408-567
Cow position: chr15:18941904-18942056 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 75, 0

Conread position: 408-567
Cow position: chr15:26380877-26380718 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 408-581
Cow position: chr15:27900634-27900470 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 410-567
Cow position: chr15:16657345-16657499 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 0

Conread position: 412-584
Cow position: chr15:4138005-4138179 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 11, 96

Conread position: 412-586
Cow position: chr15:36793619-36793451 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 45

Conread position: 414-567
Cow position: chr15:8665729-8665574 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 20

Conread position: 414-567
Cow position: chr15:20459434-20459282 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 414-586
Cow position: chr15:26617810-26617982 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 157

Conread position: 415-536
Cow position: chr15:42142750-42142870 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 114, 0

Conread position: 415-554
Cow position: chr15:4418525-4418387 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 112, 0

Conread position: 415-555
Cow position: chr15:52791817-52791956 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 132, 0

Conread position: 415-556
Cow position: chr15:36539821-36539959 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 103, 0

Conread position: 415-559
Cow position: chr15:22444110-22443966 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 415-560
Cow position: chr15:20566005-20566150 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 415-567
Cow position: chr15:16072855-16072702 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 415-567
Cow position: chr15:20534576-20534424 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 415-567
Cow position: chr15:28924886-28924729 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 6, 88

Conread position: 415-581
Cow position: chr15:7956206-7956036 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 87

Conread position: 415-581
Cow position: chr15:44402073-44401909 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 416-556
Cow position: chr15:43634151-43634014 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 420-551
Cow position: chr15:40562801-40562672 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 95, 0

Conread position: 420-556
Cow position: chr15:44119587-44119452 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 420-559
Cow position: chr15:52728572-52728431 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 33, 11

Conread position: 420-560
Cow position: chr15:17084088-17084228 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 420-567
Cow position: chr15:17124589-17124442 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 420-581
Cow position: chr15:19554043-19553884 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 11, 0

Conread position: 421-551
Cow position: chr15:40159765-40159635 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 425-579
Cow position: chr15:30956437-30956285 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 435-567
Cow position: chr15:16667601-16667469 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 103, 90

Conread position: 435-567
Cow position: chr15:43827875-43827744 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 436-571
Cow position: chr15:25366167-25366031 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 437-556
Cow position: chr15:4500597-4500718 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 437-579
Cow position: chr15:32324309-32324167 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 438-560
Cow position: chr15:48095256-48095380 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 439-575
Cow position: chr15:51831891-51831755 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 439-579
Cow position: chr15:8715281-8715144 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 442-556
Cow position: chr15:4356952-4357063 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 442-567
Cow position: chr15:38652699-38652575 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 112, 0

Conread position: 444-586
Cow position: chr15:16644882-16644743 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 39, 0

Show alignments to all cow chromosomes.