Cow genome map

Conread name: Pig3-SRG8016H04

Conread position: 1-158
Cow position: chr20:37358085-37357934 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 144, 54

Conread position: 1-169
Cow position: chr20:35442055-35442215 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 144, 52

Conread position: 2-154
Cow position: chr20:24883135-24883283 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 141, 53

Conread position: 2-157
Cow position: chr20:29768737-29768582 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 143, 53

Conread position: 2-158
Cow position: chr20:14283148-14282998 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 143, 53

Conread position: 2-160
Cow position: chr20:297779-297931 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 143, 53

Conread position: 2-160
Cow position: chr20:31468431-31468586 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 138, 53

Conread position: 2-167
Cow position: chr20:354673-354833 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 143, 53

Conread position: 2-167
Cow position: chr20:20739049-20739218 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 14

Conread position: 2-169
Cow position: chr20:360952-361119 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 53, 150

Conread position: 2-169
Cow position: chr20:5078502-5078339 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 143, 33

Conread position: 2-169
Cow position: chr20:5703697-5703538 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 131, 14

Conread position: 2-169
Cow position: chr20:6054282-6054442 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 143, 30

Conread position: 2-169
Cow position: chr20:10200574-10200413 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr20:12995768-12995938 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 134

Conread position: 2-169
Cow position: chr20:20934509-20934665 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr20:21291892-21291727 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr20:21345664-21345500 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 34, 55

Conread position: 2-169
Cow position: chr20:27323494-27323333 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr20:34202867-34202702 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 55

Conread position: 2-176
Cow position: chr20:16941057-16941228 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 143, 50

Conread position: 2-178
Cow position: chr20:7416935-7417110 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 143, 53

Conread position: 2-178
Cow position: chr20:16548047-16548221 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 142, 53

Conread position: 2-178
Cow position: chr20:17370020-17370189 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 2-195
Cow position: chr20:4945025-4945208 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 2-195
Cow position: chr20:12126076-12126261 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 142, 53

Conread position: 2-195
Cow position: chr20:34221707-34221522 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 143, 53

Conread position: 2-200
Cow position: chr20:34097723-34097917 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 143, 51

Conread position: 3-158
Cow position: chr20:21721444-21721288 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 53, 19

Conread position: 3-190
Cow position: chr20:15515207-15515393 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 142, 11

Conread position: 4-213
Cow position: chr20:26790377-26790592 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 6-160
Cow position: chr20:3320911-3321068 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 30

Conread position: 18-169
Cow position: chr20:2742925-2743070 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 127, 37

Conread position: 18-169
Cow position: chr20:8021346-8021193 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 18-186
Cow position: chr20:31077998-31077830 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 69, 24

Conread position: 19-214
Cow position: chr20:2823087-2822889 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 123, 36

Conread position: 20-169
Cow position: chr20:26059007-26059163 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 17

Conread position: 22-169
Cow position: chr20:40782172-40782028 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 122, 33

Conread position: 23-158
Cow position: chr20:6372351-6372483 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 23-158
Cow position: chr20:12085222-12085359 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 57, 30

Conread position: 23-169
Cow position: chr20:29990241-29990380 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 23-174
Cow position: chr20:36671218-36671366 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 32

Conread position: 23-175
Cow position: chr20:27340526-27340376 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 122, 27

Conread position: 29-194
Cow position: chr20:22485060-22484901 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 115, 29

Conread position: 55-169
Cow position: chr20:6096313-6096428 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 77-182
Cow position: chr20:20967481-20967374 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 393-560
Cow position: chr20:18763415-18763247 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 396-519
Cow position: chr20:36366092-36365970 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 39

Conread position: 396-567
Cow position: chr20:17369968-17370147 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 142

Conread position: 397-543
Cow position: chr20:34271604-34271457 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 398-559
Cow position: chr20:14283194-14283034 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 398-567
Cow position: chr20:3035612-3035439 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 398-567
Cow position: chr20:37609894-37609726 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 401-567
Cow position: chr20:34097680-34097847 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 137
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 108, 14

Conread position: 402-559
Cow position: chr20:5950369-5950529 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 403-560
Cow position: chr20:18500796-18500640 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 405-579
Cow position: chr20:6054242-6054415 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 70, 0

Conread position: 407-555
Cow position: chr20:37358123-37357974 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 408-556
Cow position: chr20:19622984-19623127 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 130, 88

Conread position: 408-559
Cow position: chr20:13023240-13023388 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 408-567
Cow position: chr20:3141837-3141680 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 52, 0

Conread position: 408-567
Cow position: chr20:13995072-13994920 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 408-567
Cow position: chr20:17251981-17251823 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 95, 0

Conread position: 408-567
Cow position: chr20:24712102-24711947 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 408-571
Cow position: chr20:25021694-25021528 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 408-579
Cow position: chr20:30639515-30639689 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 409-555
Cow position: chr20:5365188-5365044 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 409-560
Cow position: chr20:29990188-29990335 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 410-567
Cow position: chr20:29755039-29754882 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 12, 120

Conread position: 411-559
Cow position: chr20:39016611-39016758 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 411-567
Cow position: chr20:20124770-20124928 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 412-567
Cow position: chr20:4944992-4945148 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 415-556
Cow position: chr20:5814820-5814683 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 415-560
Cow position: chr20:14433165-14433308 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 109, 0

Conread position: 415-560
Cow position: chr20:20459847-20459703 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 415-567
Cow position: chr20:21344723-21344573 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 415-567
Cow position: chr20:34348958-34349109 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 110
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 416-550
Cow position: chr20:9033962-9034096 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 417-550
Cow position: chr20:7416907-7417044 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 417-560
Cow position: chr20:28935389-28935532 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 419-560
Cow position: chr20:14460635-14460494 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 420-567
Cow position: chr20:19201784-19201637 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 423-554
Cow position: chr20:11909438-11909568 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 116, 25

Conread position: 426-567
Cow position: chr20:297760-297902 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 112, 0

Conread position: 435-565
Cow position: chr20:11008408-11008278 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 435-586
Cow position: chr20:24883125-24883276 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 79, 149

Conread position: 437-559
Cow position: chr20:12126068-12126190 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 102, 92

Conread position: 437-567
Cow position: chr20:17524508-17524378 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 439-567
Cow position: chr20:16291922-16291794 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 444-560
Cow position: chr20:22959118-22959235 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 445-560
Cow position: chr20:30817746-30817631 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.