Cow genome map

Conread name: Pig3-SRG8016H04

Conread position: 1-211
Cow position: chr23:30617290-30617496 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 144, 54

Conread position: 2-137
Cow position: chr23:40494517-40494378 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 2-160
Cow position: chr23:9726354-9726506 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 143, 53

Conread position: 2-160
Cow position: chr23:35930133-35929986 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 143, 15

Conread position: 2-163
Cow position: chr23:16780371-16780528 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 143, 28

Conread position: 2-167
Cow position: chr23:307643-307484 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 143, 53

Conread position: 2-167
Cow position: chr23:13673828-13674003 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 2-167
Cow position: chr23:38454978-38455150 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 2-169
Cow position: chr23:56970-57137 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 125, 53

Conread position: 2-169
Cow position: chr23:187364-187205 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr23:1480827-1480666 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr23:1759432-1759273 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 145, 53

Conread position: 2-169
Cow position: chr23:1768036-1767855 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 2-169
Cow position: chr23:2471190-2471029 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr23:3204971-3204805 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 22, 52

Conread position: 2-169
Cow position: chr23:5436455-5436616 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 145, 55

Conread position: 2-169
Cow position: chr23:22530252-22530412 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 143, 46

Conread position: 2-169
Cow position: chr23:32621473-32621310 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 140, 53

Conread position: 2-169
Cow position: chr23:33232515-33232675 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr23:39864842-39864679 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 143, 55

Conread position: 2-170
Cow position: chr23:24779355-24779517 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 142, 55

Conread position: 2-174
Cow position: chr23:19179184-19179350 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 142, 25

Conread position: 2-181
Cow position: chr23:28814564-28814389 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 141, 48

Conread position: 2-182
Cow position: chr23:26591710-26591898 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 4-158
Cow position: chr23:35718496-35718349 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 141, 51

Conread position: 4-168
Cow position: chr23:5386902-5387063 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 141, 45

Conread position: 4-169
Cow position: chr23:3835398-3835568 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 51, 156

Conread position: 4-170
Cow position: chr23:29972582-29972412 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 71, 44

Conread position: 5-169
Cow position: chr23:204471-204307 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 50, 95

Conread position: 7-223
Cow position: chr23:1798293-1798081 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 138, 48

Conread position: 10-169
Cow position: chr23:18739284-18739438 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 135, 45

Conread position: 18-158
Cow position: chr23:26986098-26986233 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 18-182
Cow position: chr23:21336300-21336471 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 37, 0

Conread position: 23-151
Cow position: chr23:35535159-35535291 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 23-169
Cow position: chr23:26283893-26283751 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 122, 35

Conread position: 23-173
Cow position: chr23:4327527-4327674 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 32

Conread position: 24-178
Cow position: chr23:1397868-1398020 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 27

Conread position: 54-169
Cow position: chr23:10553866-10553982 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 91, 0

Conread position: 57-167
Cow position: chr23:4104535-4104422 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 58-169
Cow position: chr23:39780893-39780781 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 76-169
Cow position: chr23:16699921-16700015 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 82
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 80-168
Cow position: chr23:38118074-38117985 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 78
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 387-559
Cow position: chr23:8698662-8698494 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 117, 10

Conread position: 392-579
Cow position: chr23:4416047-4416234 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 393-559
Cow position: chr23:1648074-1647913 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 8, 0

Conread position: 395-551
Cow position: chr23:40965744-40965900 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 396-551
Cow position: chr23:39813736-39813581 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 23, 11

Conread position: 398-559
Cow position: chr23:1656124-1655968 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 398-560
Cow position: chr23:307690-307528 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 398-567
Cow position: chr23:11129470-11129299 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 14, 85

Conread position: 398-567
Cow position: chr23:18489886-18489721 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 21, 122

Conread position: 398-579
Cow position: chr23:40737781-40737965 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 129

Conread position: 399-560
Cow position: chr23:32621519-32621358 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 400-540
Cow position: chr23:15099701-15099836 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 400-545
Cow position: chr23:19822238-19822381 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 401-536
Cow position: chr23:4343713-4343579 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 128, 0

Conread position: 401-559
Cow position: chr23:24779308-24779469 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 401-567
Cow position: chr23:3890342-3890509 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 19, 123

Conread position: 401-567
Cow position: chr23:4003876-4003712 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 402-560
Cow position: chr23:18387360-18387518 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 113, 18

Conread position: 403-543
Cow position: chr23:1725572-1725429 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 403-555
Cow position: chr23:28580355-28580509 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 408-556
Cow position: chr23:5436420-5436566 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 408-556
Cow position: chr23:27526808-27526661 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 133, 0

Conread position: 408-559
Cow position: chr23:30617253-30617405 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 408-560
Cow position: chr23:26794691-26794845 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 408-567
Cow position: chr23:4465741-4465901 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 92, 0

Conread position: 410-550
Cow position: chr23:56936-57079 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 101, 21

Conread position: 411-560
Cow position: chr23:1337086-1337236 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 120

Conread position: 412-560
Cow position: chr23:18611545-18611692 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 413-563
Cow position: chr23:38247-38097 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 414-567
Cow position: chr23:21539376-21539220 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 415-556
Cow position: chr23:35239566-35239427 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 7, 17

Conread position: 415-560
Cow position: chr23:2110993-2110849 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 103, 0

Conread position: 415-560
Cow position: chr23:4803178-4803031 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 58, 102

Conread position: 415-561
Cow position: chr23:7856978-7856831 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 415-579
Cow position: chr23:10676070-10675905 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 415-581
Cow position: chr23:2471220-2471054 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 415-586
Cow position: chr23:3234562-3234733 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 156

Conread position: 418-559
Cow position: chr23:3244703-3244846 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 106, 0

Conread position: 418-567
Cow position: chr23:1759459-1759312 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 419-533
Cow position: chr23:16613395-16613509 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 419-544
Cow position: chr23:37436350-37436225 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 419-567
Cow position: chr23:20557633-20557779 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 420-581
Cow position: chr23:799455-799617 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 421-568
Cow position: chr23:27307957-27307810 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 423-567
Cow position: chr23:4291564-4291420 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 426-567
Cow position: chr23:18739257-18739398 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 434-551
Cow position: chr23:5436805-5436922 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 435-559
Cow position: chr23:32126500-32126376 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 435-560
Cow position: chr23:1739652-1739530 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 435-567
Cow position: chr23:3270494-3270364 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 435-567
Cow position: chr23:9726344-9726476 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 435-567
Cow position: chr23:21423961-21423833 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 435-581
Cow position: chr23:33232505-33232650 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 437-551
Cow position: chr23:41472818-41472702 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 442-567
Cow position: chr23:4972953-4972831 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 448-560
Cow position: chr23:3983007-3983118 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 64, 0

Show alignments to all cow chromosomes.