Cow genome map

Conread name: Pig3-SRG8016H04

Conread position: 1-159
Cow position: chr27:29693240-29693400 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 1-161
Cow position: chr27:7649818-7649658 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 78, 34

Conread position: 1-165
Cow position: chr27:22267993-22268157 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 144, 54

Conread position: 1-169
Cow position: chr27:11940471-11940294 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 1-169
Cow position: chr27:22254563-22254727 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 143, 49

Conread position: 2-148
Cow position: chr27:31170298-31170150 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 2-154
Cow position: chr27:25000193-25000043 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 143, 51

Conread position: 2-157
Cow position: chr27:23554555-23554407 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 143, 53

Conread position: 2-165
Cow position: chr27:13801579-13801740 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 143, 31

Conread position: 2-165
Cow position: chr27:13903155-13902989 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 53, 161

Conread position: 2-166
Cow position: chr27:590995-590833 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 142, 53

Conread position: 2-169
Cow position: chr27:19660702-19660864 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 143, 48

Conread position: 2-169
Cow position: chr27:19932840-19933001 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 143, 52

Conread position: 2-169
Cow position: chr27:21951206-21951046 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr27:22153611-22153791 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 2-169
Cow position: chr27:22455019-22454843 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 2-169
Cow position: chr27:23177538-23177380 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr27:24303717-24303879 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 143, 14

Conread position: 2-169
Cow position: chr27:26118271-26118432 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr27:27255741-27255920 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 2-174
Cow position: chr27:2592311-2592476 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 143, 53

Conread position: 2-186
Cow position: chr27:19717672-19717866 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 3-169
Cow position: chr27:16965350-16965511 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 142, 47

Conread position: 3-176
Cow position: chr27:8062576-8062410 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 142, 52

Conread position: 4-157
Cow position: chr27:19452775-19452922 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 141, 51

Conread position: 4-167
Cow position: chr27:25151865-25152020 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 141, 50

Conread position: 4-168
Cow position: chr27:28039079-28038912 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 51, 108

Conread position: 4-192
Cow position: chr27:11208781-11208598 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 141, 54

Conread position: 10-171
Cow position: chr27:6674050-6674216 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 18-160
Cow position: chr27:232341-232477 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 127, 37

Conread position: 18-169
Cow position: chr27:5553259-5553402 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 127, 13

Conread position: 18-182
Cow position: chr27:6924872-6925031 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 127, 37

Conread position: 19-168
Cow position: chr27:6550246-6550394 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 126, 36

Conread position: 19-169
Cow position: chr27:29236346-29236496 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 126, 36

Conread position: 19-178
Cow position: chr27:30489636-30489468 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 52-169
Cow position: chr27:29388485-29388604 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 54-167
Cow position: chr27:27064623-27064509 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 387-560
Cow position: chr27:31373256-31373083 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 9, 22

Conread position: 388-560
Cow position: chr27:20354316-20354488 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 26, 19

Conread position: 390-555
Cow position: chr27:28896597-28896762 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 390-559
Cow position: chr27:23128188-23128354 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 128, 16

Conread position: 391-555
Cow position: chr27:30914728-30914891 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 391-556
Cow position: chr27:29458053-29458214 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 392-525
Cow position: chr27:31359097-31358964 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 397-567
Cow position: chr27:24303671-24303840 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 107, 11

Conread position: 398-560
Cow position: chr27:27740568-27740404 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 398-567
Cow position: chr27:26314394-26314230 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 400-567
Cow position: chr27:26173225-26173394 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 400-579
Cow position: chr27:26400989-26400816 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 16, 94

Conread position: 401-548
Cow position: chr27:13875463-13875610 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 401-578
Cow position: chr27:1353310-1353487 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 19, 42

Conread position: 401-579
Cow position: chr27:19500504-19500328 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 401-581
Cow position: chr27:9504283-9504463 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 403-560
Cow position: chr27:19779609-19779763 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 404-559
Cow position: chr27:29614774-29614928 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 5, 91

Conread position: 405-560
Cow position: chr27:672398-672554 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 124, 0

Conread position: 405-567
Cow position: chr27:28922161-28921999 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 113
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 407-555
Cow position: chr27:10581273-10581416 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 408-547
Cow position: chr27:14269593-14269452 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 54, 0

Conread position: 408-550
Cow position: chr27:28472955-28472814 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 408-560
Cow position: chr27:18791776-18791625 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 408-567
Cow position: chr27:15867130-15867283 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 408-567
Cow position: chr27:26852845-26852686 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 408-567
Cow position: chr27:30458892-30458737 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 408-579
Cow position: chr27:13801542-13801717 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 88, 67

Conread position: 408-579
Cow position: chr27:29831970-29831792 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 84, 23

Conread position: 408-586
Cow position: chr27:10979596-10979773 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 16, 161

Conread position: 408-586
Cow position: chr27:31170335-31170148 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 105, 0

Conread position: 409-567
Cow position: chr27:22614593-22614754 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 106, 0

Conread position: 409-567
Cow position: chr27:26121496-26121653 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 98, 0

Conread position: 409-586
Cow position: chr27:21054194-21054372 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 410-528
Cow position: chr27:28058174-28058294 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 111

Conread position: 410-567
Cow position: chr27:2592274-2592435 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 412-567
Cow position: chr27:11208815-11208661 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 415-528
Cow position: chr27:22325439-22325326 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 415-551
Cow position: chr27:26317811-26317943 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 415-551
Cow position: chr27:30872313-30872179 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 415-559
Cow position: chr27:18752591-18752743 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 415-560
Cow position: chr27:26437376-26437235 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 91, 0

Conread position: 415-567
Cow position: chr27:5553216-5553363 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 415-567
Cow position: chr27:26245803-26245650 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 6, 0

Conread position: 415-567
Cow position: chr27:30441446-30441598 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 126, 56

Conread position: 415-586
Cow position: chr27:16965318-16965489 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 12, 79

Conread position: 416-567
Cow position: chr27:26154062-26154214 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 420-560
Cow position: chr27:26236077-26236217 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 420-567
Cow position: chr27:6924831-6924978 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 120, 109

Conread position: 420-567
Cow position: chr27:20048386-20048527 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 422-567
Cow position: chr27:11982897-11982752 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 422-579
Cow position: chr27:26112166-26112010 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 426-560
Cow position: chr27:26118252-26118386 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 435-560
Cow position: chr27:27012460-27012585 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 435-567
Cow position: chr27:24331478-24331614 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 435-567
Cow position: chr27:26467797-26467665 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 99
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 437-560
Cow position: chr27:20266460-20266339 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 437-560
Cow position: chr27:21978377-21978253 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 78, 94

Conread position: 443-563
Cow position: chr27:26624979-26625098 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 32, 0

Show alignments to all cow chromosomes.