Cow genome map

Conread name: Pig3-SRG8016H04

Conread position: 1-166
Cow position: chr29:40583967-40583811 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 125, 15

Conread position: 1-167
Cow position: chr29:12025297-12025448 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 1-168
Cow position: chr29:32656618-32656456 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 112, 53

Conread position: 1-169
Cow position: chr29:16609932-16609770 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 144, 54

Conread position: 1-169
Cow position: chr29:34359644-34359799 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 144, 54

Conread position: 2-131
Cow position: chr29:34600671-34600806 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 2-148
Cow position: chr29:36357309-36357169 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 143, 53

Conread position: 2-150
Cow position: chr29:40097162-40097003 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 2-154
Cow position: chr29:16438591-16438742 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 143, 51

Conread position: 2-154
Cow position: chr29:32799522-32799675 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 80

Conread position: 2-157
Cow position: chr29:41422728-41422877 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 143, 53

Conread position: 2-158
Cow position: chr29:26017319-26017469 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 143, 53

Conread position: 2-159
Cow position: chr29:37990806-37990967 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 2-165
Cow position: chr29:13028631-13028466 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 2-167
Cow position: chr29:2730100-2730267 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 82

Conread position: 2-167
Cow position: chr29:15947350-15947191 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr29:501381-501219 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 143, 28

Conread position: 2-169
Cow position: chr29:11894881-11894720 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 143, 46

Conread position: 2-169
Cow position: chr29:16196036-16195862 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 2-169
Cow position: chr29:17297319-17297158 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chr29:22576997-22577157 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 143, 55

Conread position: 2-169
Cow position: chr29:23819203-23819368 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 146, 53

Conread position: 2-169
Cow position: chr29:23874643-23874482 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 143, 51

Conread position: 2-169
Cow position: chr29:35677360-35677521 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 142, 46

Conread position: 2-174
Cow position: chr29:13373502-13373318 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 2-176
Cow position: chr29:4121037-4120868 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 142, 53

Conread position: 2-176
Cow position: chr29:30441120-30440952 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 143, 52

Conread position: 2-180
Cow position: chr29:33393869-33393688 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 2-194
Cow position: chr29:35189790-35189605 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 143, 52

Conread position: 3-169
Cow position: chr29:22936466-22936292 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 52, 33

Conread position: 3-176
Cow position: chr29:42771833-42771651 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 52, 119

Conread position: 4-167
Cow position: chr29:34760222-34760394 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 4-169
Cow position: chr29:5520305-5520463 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 141, 51

Conread position: 4-169
Cow position: chr29:8798830-8798993 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 73

Conread position: 5-134
Cow position: chr29:5994911-5995037 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 5-160
Cow position: chr29:28257320-28257172 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 139, 52

Conread position: 6-169
Cow position: chr29:19061584-19061752 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 49, 110

Conread position: 18-169
Cow position: chr29:86839-86989 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 126, 37

Conread position: 18-169
Cow position: chr29:18878314-18878459 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 127, 37

Conread position: 18-169
Cow position: chr29:21443171-21443316 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 127, 37

Conread position: 18-202
Cow position: chr29:27042441-27042267 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 127, 37

Conread position: 23-165
Cow position: chr29:8004754-8004900 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 32, 141

Conread position: 23-169
Cow position: chr29:26631209-26631063 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 122, 32

Conread position: 46-170
Cow position: chr29:16365738-16365864 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 55-169
Cow position: chr29:19059946-19060060 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 90, 56

Conread position: 61-169
Cow position: chr29:43544472-43544581 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 62-181
Cow position: chr29:30424669-30424789 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 72-206
Cow position: chr29:29263423-29263290 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 46, 108

Conread position: 390-560
Cow position: chr29:20644151-20643983 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 6, 37

Conread position: 390-567
Cow position: chr29:41531088-41530911 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 140

Conread position: 394-562
Cow position: chr29:26777243-26777074 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 7, 0

Conread position: 395-585
Cow position: chr29:8163598-8163787 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 188, 13

Conread position: 396-559
Cow position: chr29:35677312-35677474 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 19

Conread position: 396-567
Cow position: chr29:16735455-16735285 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 396-567
Cow position: chr29:35458541-35458711 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 138, 19

Conread position: 397-567
Cow position: chr29:17297363-17297197 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 398-559
Cow position: chr29:18878257-18878412 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 398-560
Cow position: chr29:4121084-4120922 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 114
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 398-567
Cow position: chr29:11685394-11685228 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 398-579
Cow position: chr29:4647986-4648160 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 400-555
Cow position: chr29:14828002-14828155 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 19, 47

Conread position: 401-567
Cow position: chr29:37618535-37618367 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 402-560
Cow position: chr29:16164210-16164368 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 39

Conread position: 407-567
Cow position: chr29:38754719-38754876 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 115
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 106, 0

Conread position: 408-550
Cow position: chr29:34483407-34483549 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 30

Conread position: 408-556
Cow position: chr29:23874680-23874532 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 120
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 408-560
Cow position: chr29:28087892-28087743 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 89, 0

Conread position: 408-567
Cow position: chr29:11894916-11894759 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 408-567
Cow position: chr29:14746998-14746841 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 11, 100

Conread position: 409-555
Cow position: chr29:34744413-34744556 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 51

Conread position: 411-567
Cow position: chr29:15947385-15947228 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 412-551
Cow position: chr29:4741174-4741314 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 414-560
Cow position: chr29:684967-685110 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 415-551
Cow position: chr29:26211264-26211129 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 415-553
Cow position: chr29:32656648-32656509 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 6, 0

Conread position: 415-555
Cow position: chr29:3711587-3711447 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 415-567
Cow position: chr29:16200265-16200417 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 108
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 415-567
Cow position: chr29:28420968-28420816 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 415-584
Cow position: chr29:44684308-44684142 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 97, 0

Conread position: 416-580
Cow position: chr29:24119288-24119452 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 420-550
Cow position: chr29:41094322-41094195 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 120, 38

Conread position: 422-548
Cow position: chr29:774194-774068 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 423-559
Cow position: chr29:30227077-30227213 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 423-584
Cow position: chr29:8841248-8841403 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 146, 11

Conread position: 425-550
Cow position: chr29:44937794-44937921 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 435-545
Cow position: chr29:30441130-30441019 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 88, 95

Conread position: 435-567
Cow position: chr29:5520293-5520424 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 435-581
Cow position: chr29:24187872-24188018 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 437-567
Cow position: chr29:33321538-33321408 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 439-567
Cow position: chr29:23142145-23142273 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.