Cow genome map

Conread name: Pig3-SRG8016H04

Conread position: 1-167
Cow position: chrX:1122335-1122495 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 143, 11

Conread position: 1-169
Cow position: chrX:2314406-2314568 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 143, 54

Conread position: 2-143
Cow position: chrX:3543076-3542934 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 54, 0

Conread position: 2-143
Cow position: chrX:30672173-30672312 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 2-154
Cow position: chrX:23182756-23182917 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 2-154
Cow position: chrX:41435331-41435483 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 143, 51

Conread position: 2-157
Cow position: chrX:23335764-23335913 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 143, 53

Conread position: 2-157
Cow position: chrX:38968106-38967952 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 66

Conread position: 2-157
Cow position: chrX:42492310-42492460 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 143, 53

Conread position: 2-160
Cow position: chrX:26881868-26882020 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 142, 55

Conread position: 2-160
Cow position: chrX:36039626-36039459 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 2-165
Cow position: chrX:47063057-47063223 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 2-167
Cow position: chrX:4559945-4559786 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 143, 53

Conread position: 2-167
Cow position: chrX:31983367-31983532 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 143, 53

Conread position: 2-167
Cow position: chrX:38094315-38094468 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 143, 13

Conread position: 2-168
Cow position: chrX:31829231-31829409 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 2-168
Cow position: chrX:41990912-41991082 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 2-169
Cow position: chrX:1960214-1960374 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 143, 60

Conread position: 2-169
Cow position: chrX:4612663-4612831 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 53, 14

Conread position: 2-169
Cow position: chrX:6389290-6389132 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 143, 48

Conread position: 2-169
Cow position: chrX:6407755-6407595 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 2-169
Cow position: chrX:19018617-19018780 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 143, 48

Conread position: 2-169
Cow position: chrX:24170514-24170678 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 143, 51

Conread position: 2-169
Cow position: chrX:25037203-25037038 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chrX:25412130-25411958 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 53, 13

Conread position: 2-169
Cow position: chrX:25815688-25815850 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 143, 48

Conread position: 2-169
Cow position: chrX:27074840-27075000 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chrX:27261401-27261242 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 142, 16

Conread position: 2-169
Cow position: chrX:27393807-27393975 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 53, 14

Conread position: 2-169
Cow position: chrX:28068062-28067901 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 143, 55

Conread position: 2-169
Cow position: chrX:32877168-32877324 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 143, 14

Conread position: 2-169
Cow position: chrX:33654632-33654793 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 143, 55

Conread position: 2-169
Cow position: chrX:34543997-34543835 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 56

Conread position: 2-169
Cow position: chrX:35681778-35681618 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chrX:38302025-38301861 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chrX:40680826-40680665 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 142, 53

Conread position: 2-169
Cow position: chrX:41027371-41027210 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chrX:42246970-42247131 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 143, 53

Conread position: 2-169
Cow position: chrX:42449802-42449963 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 143, 55

Conread position: 2-169
Cow position: chrX:42875420-42875263 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 143, 55

Conread position: 2-176
Cow position: chrX:34270772-34270602 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 143, 43

Conread position: 2-178
Cow position: chrX:11653978-11653812 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 143, 53

Conread position: 2-178
Cow position: chrX:27447928-27447751 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 71

Conread position: 2-181
Cow position: chrX:43014449-43014635 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 2-184
Cow position: chrX:23485741-23485557 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 77, 53

Conread position: 2-188
Cow position: chrX:32821251-32821059 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 134
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 2-189
Cow position: chrX:48822131-48822313 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 143, 50

Conread position: 2-190
Cow position: chrX:20339684-20339864 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 143, 16

Conread position: 2-192
Cow position: chrX:41270756-41270962 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 2-217
Cow position: chrX:25282803-25283032 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 54, 176

Conread position: 3-153
Cow position: chrX:21910805-21910961 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 78, 52

Conread position: 3-169
Cow position: chrX:41363640-41363808 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 4-166
Cow position: chrX:27175209-27175052 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 23, 52

Conread position: 4-168
Cow position: chrX:21328123-21327965 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 138, 53

Conread position: 4-169
Cow position: chrX:22822264-22822097 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 4-169
Cow position: chrX:31294360-31294521 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 141, 51

Conread position: 4-169
Cow position: chrX:42855672-42855509 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 133
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 141, 52

Conread position: 4-169
Cow position: chrX:46532281-46532444 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 141, 51

Conread position: 4-192
Cow position: chrX:40649111-40648926 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 141, 51

Conread position: 5-169
Cow position: chrX:28877958-28878123 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 50, 59

Conread position: 10-169
Cow position: chrX:43008813-43008660 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 135, 46

Conread position: 18-169
Cow position: chrX:10237718-10237862 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 127, 31

Conread position: 18-169
Cow position: chrX:37489924-37489770 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 37, 92

Conread position: 18-175
Cow position: chrX:37867628-37867476 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 127, 37

Conread position: 18-193
Cow position: chrX:16323820-16323990 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 127, 35

Conread position: 19-176
Cow position: chrX:4444622-4444465 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 123, 36

Conread position: 23-165
Cow position: chrX:44339130-44339270 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 122, 32

Conread position: 23-169
Cow position: chrX:34503118-34502971 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 122, 0

Conread position: 23-178
Cow position: chrX:169351-169504 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 122, 32

Conread position: 23-193
Cow position: chrX:28865814-28865975 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 122, 32

Conread position: 37-213
Cow position: chrX:6463785-6463600 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 19, 0

Conread position: 39-175
Cow position: chrX:7107684-7107547 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 16

Conread position: 45-144
Cow position: chrX:31323333-31323235 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 86
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 48-167
Cow position: chrX:15147024-15147145 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 35, 9

Conread position: 54-169
Cow position: chrX:11582388-11582272 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 54-169
Cow position: chrX:43730057-43730173 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 56-206
Cow position: chrX:23187428-23187588 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 70-169
Cow position: chrX:38208394-38208494 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 72-194
Cow position: chrX:9416535-9416656 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 73, 99

Conread position: 76-163
Cow position: chrX:5900607-5900519 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 80-212
Cow position: chrX:33640116-33639980 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 392-549
Cow position: chrX:44040438-44040284 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 393-567
Cow position: chrX:28068116-28067940 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 122
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 394-567
Cow position: chrX:11674366-11674200 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 132, 24

Conread position: 395-557
Cow position: chrX:39179969-39180134 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 395-567
Cow position: chrX:17231997-17231825 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 143, 20

Conread position: 396-560
Cow position: chrX:20339635-20339797 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 63, 0

Conread position: 396-567
Cow position: chrX:2314358-2314529 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 25

Conread position: 396-581
Cow position: chrX:35285438-35285249 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 397-551
Cow position: chrX:29724008-29723857 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 397-556
Cow position: chrX:783706-783545 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 398-567
Cow position: chrX:35509421-35509589 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 108

Conread position: 398-567
Cow position: chrX:42492260-42492433 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 136

Conread position: 399-586
Cow position: chrX:38302071-38301882 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 39

Conread position: 400-560
Cow position: chrX:24170469-24170633 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 115, 0

Conread position: 401-552
Cow position: chrX:6856115-6855964 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 401-567
Cow position: chrX:44995759-44995589 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 401-580
Cow position: chrX:17498578-17498399 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 402-567
Cow position: chrX:15546135-15545972 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 402-567
Cow position: chrX:37956096-37955937 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 402-567
Cow position: chrX:44192190-44192354 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 76, 12

Conread position: 402-583
Cow position: chrX:26979538-26979718 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 136, 16

Conread position: 402-586
Cow position: chrX:4632600-4632784 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 143, 168

Conread position: 403-536
Cow position: chrX:32590154-32590284 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 403-541
Cow position: chrX:38080400-38080263 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 403-567
Cow position: chrX:41941878-41941713 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 24, 88

Conread position: 403-581
Cow position: chrX:20345706-20345526 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 124
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 404-579
Cow position: chrX:31489777-31489598 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 404-581
Cow position: chrX:30962622-30962801 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 404-581
Cow position: chrX:42246926-42247106 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 13, 0

Conread position: 406-567
Cow position: chrX:51651-51811 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 110

Conread position: 406-567
Cow position: chrX:1996201-1996362 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 406-567
Cow position: chrX:27175251-27175088 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 406-579
Cow position: chrX:42760501-42760330 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 406-581
Cow position: chrX:43150680-43150507 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 407-560
Cow position: chrX:8759872-8759718 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 135, 0

Conread position: 408-559
Cow position: chrX:35659042-35658894 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 408-560
Cow position: chrX:11633925-11633779 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 134, 23

Conread position: 408-560
Cow position: chrX:41878689-41878837 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 66, 51

Conread position: 408-567
Cow position: chrX:27705835-27705676 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 58, 67

Conread position: 408-568
Cow position: chrX:42506699-42506860 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 110, 23

Conread position: 408-581
Cow position: chrX:14925526-14925348 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 408-586
Cow position: chrX:33654593-33654771 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 161

Conread position: 409-559
Cow position: chrX:26881833-26881982 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 409-567
Cow position: chrX:41435295-41435459 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 409-567
Cow position: chrX:46588067-46587912 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 409-579
Cow position: chrX:34193832-34194003 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 411-551
Cow position: chrX:24365577-24365717 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 412-567
Cow position: chrX:25035138-25035292 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 414-521
Cow position: chrX:29451303-29451410 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 414-567
Cow position: chrX:37717965-37717811 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 415-555
Cow position: chrX:19356705-19356565 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 415-556
Cow position: chrX:41194149-41194006 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 64

Conread position: 415-559
Cow position: chrX:41215564-41215420 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 104
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 415-560
Cow position: chrX:25815658-25815804 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 94, 126

Conread position: 415-560
Cow position: chrX:34441212-34441357 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 415-567
Cow position: chrX:12095531-12095682 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 415-567
Cow position: chrX:27442297-27442449 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 415-567
Cow position: chrX:42449772-42449924 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 415-579
Cow position: chrX:12290959-12290797 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 87, 0

Conread position: 416-560
Cow position: chrX:3806917-3806779 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 416-560
Cow position: chrX:11602246-11602388 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 43

Conread position: 416-584
Cow position: chrX:6407784-6407616 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 417-567
Cow position: chrX:37867672-37867522 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 418-560
Cow position: chrX:26367464-26367606 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 104
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 418-567
Cow position: chrX:35276224-35276075 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 420-567
Cow position: chrX:21328150-21328003 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 421-559
Cow position: chrX:17524149-17524286 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 421-560
Cow position: chrX:32330406-32330267 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 421-567
Cow position: chrX:36866409-36866263 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 132

Conread position: 421-579
Cow position: chrX:37867489-37867331 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 421-580
Cow position: chrX:19018594-19018754 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 77, 10

Conread position: 422-559
Cow position: chrX:4559968-4559831 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 422-567
Cow position: chrX:34398550-34398694 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 425-567
Cow position: chrX:41027391-41027249 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 430-559
Cow position: chrX:13347495-13347366 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 435-560
Cow position: chrX:8642266-8642141 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 435-560
Cow position: chrX:10479971-10479846 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 435-567
Cow position: chrX:876626-876757 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 435-567
Cow position: chrX:29478943-29478813 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 435-567
Cow position: chrX:40680836-40680704 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 435-579
Cow position: chrX:27508803-27508946 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 83, 112

Conread position: 435-579
Cow position: chrX:35681788-35681645 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 435-580
Cow position: chrX:36283561-36283417 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 436-560
Cow position: chrX:27261410-27261289 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 437-560
Cow position: chrX:32910316-32910196 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 437-577
Cow position: chrX:42159161-42159021 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 437-581
Cow position: chrX:10516473-10516329 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 439-551
Cow position: chrX:23335758-23335870 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 88
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 439-560
Cow position: chrX:1122330-1122450 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 439-567
Cow position: chrX:42836398-42836271 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 76, 0

Conread position: 442-586
Cow position: chrX:31986358-31986501 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 106
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 444-567
Cow position: chrX:8731306-8731183 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.