Cow genome map

Conread name: Pig3-SRG8020G16

Conread position: 184-304
Cow position: chr12:42749619-42749497 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 45, 21

Conread position: 186-303
Cow position: chr12:9055241-9055359 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 187-275
Cow position: chr12:7110382-7110293 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 78
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 187-297
Cow position: chr12:7515050-7514938 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 187-302
Cow position: chr12:7049993-7049880 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 41, 21

Conread position: 187-304
Cow position: chr12:6958392-6958279 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 101
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 5

Conread position: 187-304
Cow position: chr12:43551042-43551161 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 187-326
Cow position: chr12:40910110-40910250 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 18, 77

Conread position: 189-303
Cow position: chr12:35137093-35136978 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 189-303
Cow position: chr12:37420331-37420446 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 190-302
Cow position: chr12:23939390-23939278 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 76

Conread position: 192-287
Cow position: chr12:34473439-34473535 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 85
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 192-294
Cow position: chr12:25456590-25456485 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 192-298
Cow position: chr12:2835574-2835465 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 192-301
Cow position: chr12:26927749-26927858 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 36, 89

Conread position: 192-302
Cow position: chr12:19258445-19258338 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 193-292
Cow position: chr12:29131757-29131657 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 193-303
Cow position: chr12:17928912-17929024 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 193-303
Cow position: chr12:30042897-30042785 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 193-304
Cow position: chr12:39149880-39149993 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 194-303
Cow position: chr12:14223150-14223041 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 92

Conread position: 194-303
Cow position: chr12:46106956-46106846 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 194-330
Cow position: chr12:33976370-33976232 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 34, 133

Conread position: 195-303
Cow position: chr12:42879865-42879753 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 195-326
Cow position: chr12:44892375-44892242 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 196-303
Cow position: chr12:3454863-3454754 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 36

Conread position: 200-304
Cow position: chr12:29289948-29289844 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 28, 70

Conread position: 202-303
Cow position: chr12:44861098-44861200 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 205-303
Cow position: chr12:26357211-26357311 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 424-606
Cow position: chr12:4793316-4793131 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 33, 149

Conread position: 431-604
Cow position: chr12:42234170-42233992 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 55

Conread position: 439-603
Cow position: chr12:18943555-18943721 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 26, 133

Conread position: 450-606
Cow position: chr12:21922542-21922385 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 21, 119

Conread position: 454-604
Cow position: chr12:28884994-28885142 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 10

Conread position: 464-605
Cow position: chr12:31429494-31429633 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 82, 103

Conread position: 464-606
Cow position: chr12:27563300-27563443 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 121
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 80, 107

Conread position: 464-606
Cow position: chr12:30661873-30662016 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 82, 107

Conread position: 464-606
Cow position: chr12:35770944-35771087 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 80, 107

Conread position: 465-605
Cow position: chr12:28582434-28582569 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 465-606
Cow position: chr12:6210082-6210224 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 79, 106

Conread position: 465-606
Cow position: chr12:21780238-21780096 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 120
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 81, 106

Conread position: 465-606
Cow position: chr12:42286046-42285904 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 79, 106

Conread position: 466-602
Cow position: chr12:23916917-23916784 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 115
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 80, 0

Conread position: 466-602
Cow position: chr12:41581186-41581052 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 67

Conread position: 466-603
Cow position: chr12:15163214-15163077 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 78, 104

Conread position: 466-603
Cow position: chr12:15700155-15700015 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 119
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 63, 46

Conread position: 466-604
Cow position: chr12:6410659-6410799 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 62, 106

Conread position: 466-604
Cow position: chr12:26217749-26217889 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 83, 105

Conread position: 466-604
Cow position: chr12:34161488-34161350 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 80, 104

Conread position: 466-605
Cow position: chr12:7978112-7977975 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 80, 0

Conread position: 466-605
Cow position: chr12:11587849-11587709 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 78, 105

Conread position: 466-605
Cow position: chr12:18523644-18523499 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 122
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 79, 102

Conread position: 466-605
Cow position: chr12:30210558-30210418 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 81, 105

Conread position: 466-605
Cow position: chr12:33851432-33851296 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 466-605
Cow position: chr12:37008632-37008768 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 78, 0

Conread position: 466-605
Cow position: chr12:40157950-40158087 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 74, 56

Conread position: 466-605
Cow position: chr12:45001993-45002132 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 118
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 78, 19

Conread position: 466-606
Cow position: chr12:3879905-3880046 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 78, 107

Conread position: 466-606
Cow position: chr12:4341669-4341810 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 80, 103

Conread position: 466-606
Cow position: chr12:4596539-4596396 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 104, 83

Conread position: 466-606
Cow position: chr12:4720022-4719881 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 78, 105

Conread position: 466-606
Cow position: chr12:6241394-6241253 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 81, 105

Conread position: 466-606
Cow position: chr12:6754271-6754130 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 78, 105

Conread position: 466-606
Cow position: chr12:9129983-9129843 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 77, 56

Conread position: 466-606
Cow position: chr12:9914864-9914723 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 118
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 78, 105

Conread position: 466-606
Cow position: chr12:15495974-15495832 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 78, 106

Conread position: 466-606
Cow position: chr12:30590842-30590698 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 80, 100

Conread position: 466-606
Cow position: chr12:33323420-33323562 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 20, 106

Conread position: 466-606
Cow position: chr12:35368717-35368576 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 122
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 78, 105

Conread position: 466-606
Cow position: chr12:37993657-37993798 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 120
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 81, 105

Conread position: 466-606
Cow position: chr12:40910211-40910355 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 22

Conread position: 466-606
Cow position: chr12:42967069-42966934 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 466-606
Cow position: chr12:44517663-44517804 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 80, 105

Conread position: 466-606
Cow position: chr12:48415441-48415578 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 467-601
Cow position: chr12:3675455-3675588 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 114
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 77, 27

Conread position: 467-602
Cow position: chr12:7457471-7457605 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 87, 79

Conread position: 467-604
Cow position: chr12:4768999-4768862 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 89, 103

Conread position: 467-604
Cow position: chr12:45069310-45069452 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 107

Conread position: 467-605
Cow position: chr12:4797374-4797235 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 118
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 80, 104

Conread position: 467-605
Cow position: chr12:18103538-18103674 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 76, 101

Conread position: 467-605
Cow position: chr12:24152414-24152270 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 467-605
Cow position: chr12:42749512-42749375 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 16, 79

Conread position: 467-606
Cow position: chr12:3623768-3623628 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 76, 104

Conread position: 467-606
Cow position: chr12:4135151-4135011 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 120
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 76, 104

Conread position: 467-606
Cow position: chr12:4162281-4162429 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 47, 112

Conread position: 467-606
Cow position: chr12:17881935-17881795 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 80, 104

Conread position: 467-606
Cow position: chr12:24211481-24211347 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 467-606
Cow position: chr12:45167946-45168085 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 119
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 82, 21

Conread position: 468-606
Cow position: chr12:2711571-2711432 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 71, 90

Conread position: 469-606
Cow position: chr12:23855904-23855773 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 0

Conread position: 476-606
Cow position: chr12:6188049-6188180 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 68, 93

Conread position: 478-604
Cow position: chr12:25110378-25110502 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 485-605
Cow position: chr12:9894838-9894717 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 84

Conread position: 488-606
Cow position: chr12:25452394-25452513 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 58, 83

Show alignments to all cow chromosomes.