Cow genome map
| Conread name: | Pig3-SRG8020G16 |
| Conread position: | 177-292 |
| Cow position: | chr28:22278398-22278514 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 184-304 |
| Cow position: | chr28:10615729-10615844 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 186-303 |
| Cow position: | chr28:29500628-29500503 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 187-279 |
| Cow position: | chr28:11866451-11866544 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 187-296 |
| Cow position: | chr28:26703880-26703989 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 42, 95 |
| Conread position: | 187-303 |
| Cow position: | chr28:7644963-7644844 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 187-303 |
| Cow position: | chr28:16200523-16200640 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 187-303 |
| Cow position: | chr28:17620142-17620259 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 187-303 |
| Cow position: | chr28:19127955-19128072 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 188-303 |
| Cow position: | chr28:8164994-8165113 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 188-303 |
| Cow position: | chr28:17737934-17738050 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 188-334 |
| Cow position: | chr28:5436870-5437019 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 188-346 |
| Cow position: | chr28:24727035-24726877 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 40, 90 |
| Conread position: | 189-291 |
| Cow position: | chr28:21207162-21207264 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 89 |
| Conread position: | 189-602 |
| Cow position: | chr28:18353943-18354347 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 257 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 104, 39 |
| Conread position: | 190-302 |
| Cow position: | chr28:3311004-3311120 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 191-310 |
| Cow position: | chr28:4873111-4873236 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 192-284 |
| Cow position: | chr28:32203336-32203245 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 79 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 192-303 |
| Cow position: | chr28:3725996-3726106 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 93 |
| Conread position: | 192-303 |
| Cow position: | chr28:11743616-11743725 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 192-304 |
| Cow position: | chr28:5144302-5144419 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 192-321 |
| Cow position: | chr28:11398582-11398715 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 192-347 |
| Cow position: | chr28:5294790-5294944 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 122, 36 |
| Conread position: | 193-303 |
| Cow position: | chr28:4163368-4163480 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 193-303 |
| Cow position: | chr28:6301296-6301184 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 193-303 |
| Cow position: | chr28:10495088-10495198 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 193-305 |
| Cow position: | chr28:27941570-27941682 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 193-326 |
| Cow position: | chr28:7697767-7697904 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 193-326 |
| Cow position: | chr28:32014997-32014862 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 193-346 |
| Cow position: | chr28:5630311-5630153 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 135 |
| Conread position: | 194-303 |
| Cow position: | chr28:6124049-6124159 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 70 |
| Conread position: | 197-303 |
| Cow position: | chr28:21046382-21046490 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 198-303 |
| Cow position: | chr28:5236080-5235977 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 199-303 |
| Cow position: | chr28:24767614-24767507 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 199-353 |
| Cow position: | chr28:16964758-16964915 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 6, 129 |
| Conread position: | 200-303 |
| Cow position: | chr28:17740029-17739925 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 464-606 |
| Cow position: | chr28:18770200-18770062 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 464-606 |
| Cow position: | chr28:26719463-26719320 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 80, 107 |
| Conread position: | 465-603 |
| Cow position: | chr28:20397251-20397390 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 79, 106 |
| Conread position: | 465-603 |
| Cow position: | chr28:23007611-23007750 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 106 |
| Conread position: | 465-606 |
| Cow position: | chr28:7008859-7009001 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 81, 106 |
| Conread position: | 465-606 |
| Cow position: | chr28:16085444-16085302 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 81, 106 |
| Conread position: | 465-606 |
| Cow position: | chr28:33322578-33322434 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 63, 108 |
| Conread position: | 466-601 |
| Cow position: | chr28:30865535-30865401 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 466-602 |
| Cow position: | chr28:2899107-2898970 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 83, 105 |
| Conread position: | 466-602 |
| Cow position: | chr28:17601436-17601573 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 78, 105 |
| Conread position: | 466-603 |
| Cow position: | chr28:19015820-19015696 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 466-603 |
| Cow position: | chr28:26743744-26743606 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 105 |
| Conread position: | 466-604 |
| Cow position: | chr28:3726091-3726232 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 466-604 |
| Cow position: | chr28:5144403-5144542 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 81, 105 |
| Conread position: | 466-604 |
| Cow position: | chr28:23047736-23047599 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 466-605 |
| Cow position: | chr28:3449430-3449281 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 114 |
| Conread position: | 466-605 |
| Cow position: | chr28:19564112-19564250 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 84, 12 |
| Conread position: | 466-606 |
| Cow position: | chr28:2772828-2772690 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 78, 39 |
| Conread position: | 466-606 |
| Cow position: | chr28:3011152-3011292 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 70 |
| Conread position: | 466-606 |
| Cow position: | chr28:4765794-4765651 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 62, 107 |
| Conread position: | 466-606 |
| Cow position: | chr28:4881122-4881262 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 78, 103 |
| Conread position: | 466-606 |
| Cow position: | chr28:5630214-5630075 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 80, 43 |
| Conread position: | 466-606 |
| Cow position: | chr28:7697864-7698001 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 466-606 |
| Cow position: | chr28:8147746-8147886 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 80, 55 |
| Conread position: | 466-606 |
| Cow position: | chr28:21363858-21363724 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 466-606 |
| Cow position: | chr28:25249472-25249331 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 81, 105 |
| Conread position: | 466-606 |
| Cow position: | chr28:26922250-26922391 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 78, 105 |
| Conread position: | 466-606 |
| Cow position: | chr28:27161209-27161349 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 81, 54 |
| Conread position: | 469-604 |
| Cow position: | chr28:9100041-9099915 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 77, 32 |
| Conread position: | 469-605 |
| Cow position: | chr28:5931464-5931334 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 477-601 |
| Cow position: | chr28:19345357-19345232 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 70, 46 |
| Conread position: | 510-606 |
| Cow position: | chr28:5827024-5826927 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 34, 61 |
Show alignments to all cow chromosomes.