Cow genome map
| Conread name: | Pig3-SRG8020G16 |
| Conread position: | 187-302 |
| Cow position: | chr29:28420968-28420852 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 187-303 |
| Cow position: | chr29:4741178-4741295 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 187-303 |
| Cow position: | chr29:14614825-14614941 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 66 |
| Conread position: | 187-303 |
| Cow position: | chr29:16200266-16200382 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 188-303 |
| Cow position: | chr29:5994879-5995000 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 188-303 |
| Cow position: | chr29:15947379-15947263 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 190-303 |
| Cow position: | chr29:38754729-38754841 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 191-303 |
| Cow position: | chr29:11685377-11685263 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 191-303 |
| Cow position: | chr29:14746985-14746876 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 192-293 |
| Cow position: | chr29:13085858-13085756 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 192-295 |
| Cow position: | chr29:11140075-11139971 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 193-278 |
| Cow position: | chr29:19339461-19339375 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 76 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 193-287 |
| Cow position: | chr29:1403028-1402935 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 193-303 |
| Cow position: | chr29:26777216-26777104 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 193-303 |
| Cow position: | chr29:34483420-34483531 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 193-326 |
| Cow position: | chr29:23874668-23874531 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 195-303 |
| Cow position: | chr29:659484-659378 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 195-303 |
| Cow position: | chr29:12025276-12025380 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 195-326 |
| Cow position: | chr29:14577060-14576930 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 81 |
| Conread position: | 196-281 |
| Cow position: | chr29:5147837-5147751 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 79 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 196-303 |
| Cow position: | chr29:7452443-7452337 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 32, 81 |
| Conread position: | 196-304 |
| Cow position: | chr29:17297340-17297231 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 199-284 |
| Cow position: | chr29:2720856-2720942 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 77 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 200-284 |
| Cow position: | chr29:2730082-2730167 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 78 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 5, 72 |
| Conread position: | 200-303 |
| Cow position: | chr29:31489522-31489415 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 200-325 |
| Cow position: | chr29:36357326-36357200 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 116 |
| Conread position: | 438-603 |
| Cow position: | chr29:8004789-8004949 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 438-606 |
| Cow position: | chr29:22936411-22936242 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 118 |
| Conread position: | 458-606 |
| Cow position: | chr29:29057294-29057149 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 464-605 |
| Cow position: | chr29:6015239-6015095 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 95, 87 |
| Conread position: | 464-606 |
| Cow position: | chr29:23698091-23697947 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 108 |
| Conread position: | 464-606 |
| Cow position: | chr29:28195408-28195545 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 465-602 |
| Cow position: | chr29:25088855-25088720 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 82, 107 |
| Conread position: | 465-604 |
| Cow position: | chr29:11053748-11053887 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 79, 105 |
| Conread position: | 465-605 |
| Cow position: | chr29:5789140-5788999 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 67 |
| Conread position: | 465-605 |
| Cow position: | chr29:16657807-16657665 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 465-606 |
| Cow position: | chr29:23825785-23825640 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 465-606 |
| Cow position: | chr29:31814051-31813914 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 465-606 |
| Cow position: | chr29:41530961-41530820 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 22 |
| Conread position: | 466-596 |
| Cow position: | chr29:3293058-3292928 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 466-604 |
| Cow position: | chr29:7310784-7310649 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 466-604 |
| Cow position: | chr29:27926884-27926748 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 54 |
| Conread position: | 466-604 |
| Cow position: | chr29:35458660-35458799 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 466-605 |
| Cow position: | chr29:31934490-31934350 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 80, 105 |
| Conread position: | 466-606 |
| Cow position: | chr29:2262884-2263022 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 466-606 |
| Cow position: | chr29:5210602-5210462 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 466-606 |
| Cow position: | chr29:6844521-6844662 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 88, 97 |
| Conread position: | 466-606 |
| Cow position: | chr29:12025365-12025497 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 466-606 |
| Cow position: | chr29:13028551-13028414 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 466-606 |
| Cow position: | chr29:19428771-19428629 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 57, 33 |
| Conread position: | 466-606 |
| Cow position: | chr29:22519016-22519157 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 466-606 |
| Cow position: | chr29:23874571-23874430 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 78, 105 |
| Conread position: | 466-606 |
| Cow position: | chr29:40994780-40994920 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 81, 104 |
| Conread position: | 466-606 |
| Cow position: | chr29:42630230-42630091 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 81, 19 |
| Conread position: | 466-606 |
| Cow position: | chr29:43544492-43544632 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 104 |
| Conread position: | 467-606 |
| Cow position: | chr29:17409445-17409305 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 78, 104 |
| Conread position: | 468-605 |
| Cow position: | chr29:26416460-26416326 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 468-606 |
| Cow position: | chr29:17222524-17222383 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 105 |
| Conread position: | 469-605 |
| Cow position: | chr29:396514-396384 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 469-606 |
| Cow position: | chr29:35292201-35292062 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 73, 103 |
| Conread position: | 472-606 |
| Cow position: | chr29:32290714-32290579 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 99 |
| Conread position: | 475-606 |
| Cow position: | chr29:8686432-8686300 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 69, 96 |
| Conread position: | 476-603 |
| Cow position: | chr29:28868744-28868612 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 99 |
| Conread position: | 487-604 |
| Cow position: | chr29:41365199-41365083 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 44 |
Show alignments to all cow chromosomes.