Cow genome map
| Conread name: | Pig3-SRG8020G16 |
| Conread position: | 185-303 |
| Cow position: | chr6:55061123-55061000 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 185-304 |
| Cow position: | chr6:24536272-24536394 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 187-302 |
| Cow position: | chr6:24110536-24110420 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 187-302 |
| Cow position: | chr6:30688259-30688373 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 187-303 |
| Cow position: | chr6:12711540-12711655 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 187-303 |
| Cow position: | chr6:51019403-51019286 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 187-303 |
| Cow position: | chr6:51649079-51648962 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 187-303 |
| Cow position: | chr6:67574643-67574525 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 187-304 |
| Cow position: | chr6:48449068-48448952 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 187-304 |
| Cow position: | chr6:62325245-62325125 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 188-276 |
| Cow position: | chr6:34463339-34463429 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 191-303 |
| Cow position: | chr6:18447266-18447380 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 192-284 |
| Cow position: | chr6:59297293-59297199 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 192-303 |
| Cow position: | chr6:18903790-18903898 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 36, 73 |
| Conread position: | 192-303 |
| Cow position: | chr6:19681965-19681852 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 192-303 |
| Cow position: | chr6:49686067-49685955 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 192-303 |
| Cow position: | chr6:53138691-53138802 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 192-304 |
| Cow position: | chr6:34569663-34569543 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 193-283 |
| Cow position: | chr6:23353802-23353712 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 81 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 193-302 |
| Cow position: | chr6:23381419-23381530 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 193-303 |
| Cow position: | chr6:59101072-59101184 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 193-326 |
| Cow position: | chr6:22876681-22876818 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 194-284 |
| Cow position: | chr6:13040698-13040608 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 81 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 194-287 |
| Cow position: | chr6:2617948-2618042 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 194-303 |
| Cow position: | chr6:10399663-10399777 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 194-303 |
| Cow position: | chr6:38615372-38615264 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 196-299 |
| Cow position: | chr6:56850260-56850156 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 197-303 |
| Cow position: | chr6:3937029-3936920 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 197-303 |
| Cow position: | chr6:15243081-15242974 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 197-303 |
| Cow position: | chr6:57467841-57467734 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 199-304 |
| Cow position: | chr6:28559780-28559675 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 424-606 |
| Cow position: | chr6:51399264-51399088 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 120, 23 |
| Conread position: | 452-606 |
| Cow position: | chr6:11830356-11830208 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 464-606 |
| Cow position: | chr6:26450468-26450326 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 10, 106 |
| Conread position: | 464-606 |
| Cow position: | chr6:46331075-46330937 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 465-606 |
| Cow position: | chr6:11169856-11169712 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 108 |
| Conread position: | 465-606 |
| Cow position: | chr6:17313887-17313747 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 79, 48 |
| Conread position: | 465-606 |
| Cow position: | chr6:62670019-62669877 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 79, 106 |
| Conread position: | 466-601 |
| Cow position: | chr6:47958964-47958832 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 466-602 |
| Cow position: | chr6:4691823-4691959 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 80, 37 |
| Conread position: | 466-602 |
| Cow position: | chr6:15242989-15242850 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 466-602 |
| Cow position: | chr6:19013216-19013087 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 466-602 |
| Cow position: | chr6:66947669-66947802 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 466-604 |
| Cow position: | chr6:19681372-19681511 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 80, 105 |
| Conread position: | 466-604 |
| Cow position: | chr6:37395247-37395387 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 45, 106 |
| Conread position: | 466-605 |
| Cow position: | chr6:6067548-6067689 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 24, 106 |
| Conread position: | 466-606 |
| Cow position: | chr6:143222-143362 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 81, 98 |
| Conread position: | 466-606 |
| Cow position: | chr6:582120-582260 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 81, 104 |
| Conread position: | 466-606 |
| Cow position: | chr6:2585095-2584954 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 78, 105 |
| Conread position: | 466-606 |
| Cow position: | chr6:11246919-11246778 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 466-606 |
| Cow position: | chr6:17794611-17794752 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 81, 105 |
| Conread position: | 466-606 |
| Cow position: | chr6:19225232-19225362 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 466-606 |
| Cow position: | chr6:24110434-24110294 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 88 |
| Conread position: | 466-606 |
| Cow position: | chr6:33450823-33450958 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 466-606 |
| Cow position: | chr6:37149342-37149201 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 80, 105 |
| Conread position: | 466-606 |
| Cow position: | chr6:44623763-44623621 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 466-606 |
| Cow position: | chr6:53932695-53932837 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 81, 12 |
| Conread position: | 466-606 |
| Cow position: | chr6:55535599-55535737 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 114, 47 |
| Conread position: | 466-606 |
| Cow position: | chr6:60118300-60118162 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 80, 35 |
| Conread position: | 466-606 |
| Cow position: | chr6:64432091-64431949 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 80, 104 |
| Conread position: | 466-606 |
| Cow position: | chr6:67805862-67806003 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 113, 96 |
| Conread position: | 466-606 |
| Cow position: | chr6:69153562-69153425 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 77, 105 |
| Conread position: | 467-602 |
| Cow position: | chr6:15300683-15300813 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 467-603 |
| Cow position: | chr6:40774180-40774317 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 104 |
| Conread position: | 467-604 |
| Cow position: | chr6:15447046-15447184 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 77, 104 |
| Conread position: | 467-606 |
| Cow position: | chr6:6343582-6343438 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 66, 108 |
| Conread position: | 467-606 |
| Cow position: | chr6:19446402-19446265 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 78 |
| Conread position: | 467-606 |
| Cow position: | chr6:38218819-38218680 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 8, 103 |
| Conread position: | 467-606 |
| Cow position: | chr6:46173107-46173246 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 103 |
| Conread position: | 468-606 |
| Cow position: | chr6:35990083-35990224 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 105 |
| Conread position: | 468-606 |
| Cow position: | chr6:37783551-37783412 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 76, 103 |
| Conread position: | 468-606 |
| Cow position: | chr6:60667561-60667425 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 76, 40 |
| Conread position: | 469-604 |
| Cow position: | chr6:34195999-34196137 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 103 |
| Conread position: | 469-605 |
| Cow position: | chr6:20196153-20196286 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 469-606 |
| Cow position: | chr6:51530038-51530178 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 470-606 |
| Cow position: | chr6:37692898-37692763 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 474-604 |
| Cow position: | chr6:51969221-51969091 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 96 |
| Conread position: | 474-605 |
| Cow position: | chr6:17548829-17548961 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 97 |
| Conread position: | 475-605 |
| Cow position: | chr6:18048883-18049011 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 475-605 |
| Cow position: | chr6:47305483-47305354 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 12 |
| Conread position: | 476-606 |
| Cow position: | chr6:36012045-36011917 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 478-604 |
| Cow position: | chr6:61142421-61142549 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.