Cow genome map
| Conread name: | Pig3-SRG8021P10 |
| Conread position: | 1-417 |
| Cow position: | chr1:89349682-89350083 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 293 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 1-418 |
| Cow position: | chr1:72304665-72304268 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 24 |
| Conread position: | 1-464 |
| Cow position: | chr1:70296973-70297449 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 15, 168 |
| Conread position: | 1-464 |
| Cow position: | chr1:84282766-84283243 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 318 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 1-499 |
| Cow position: | chr1:95499790-95499294 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 1-504 |
| Cow position: | chr1:56225183-56225673 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 1-505 |
| Cow position: | chr1:22728753-22729261 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 1-519 |
| Cow position: | chr1:12222900-12222383 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 351 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 1-525 |
| Cow position: | chr1:46693951-46693424 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 1-526 |
| Cow position: | chr1:81290226-81290732 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 24 |
| Conread position: | 2-389 |
| Cow position: | chr1:19465765-19466144 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 148 |
| Conread position: | 7-505 |
| Cow position: | chr1:25383373-25383876 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 8-375 |
| Cow position: | chr1:64678412-64678772 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 19-528 |
| Cow position: | chr1:1981388-1980880 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 122 |
| Conread position: | 19-528 |
| Cow position: | chr1:73546191-73545676 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 22-506 |
| Cow position: | chr1:89510205-89509722 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 25 |
| Conread position: | 22-525 |
| Cow position: | chr1:97755253-97755727 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 332 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 24-525 |
| Cow position: | chr1:97954719-97954255 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 336 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 97, 23 |
| Conread position: | 34-360 |
| Cow position: | chr1:80899845-80900182 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 34-638 |
| Cow position: | chr1:75744597-75745199 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 114 |
| Conread position: | 38-435 |
| Cow position: | chr1:52994765-52995166 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 160 |
| Conread position: | 40-430 |
| Cow position: | chr1:98551460-98551854 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 23 |
| Conread position: | 41-509 |
| Cow position: | chr1:45555106-45555576 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 44-399 |
| Cow position: | chr1:5135944-5135609 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 93, 109 |
| Conread position: | 46-375 |
| Cow position: | chr1:83583191-83582856 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 33, 156 |
| Conread position: | 52-540 |
| Cow position: | chr1:44506722-44507207 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 42 |
| Conread position: | 68-502 |
| Cow position: | chr1:81515011-81515443 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 330, 184 |
| Conread position: | 68-528 |
| Cow position: | chr1:55705482-55705016 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 373 |
| Conread position: | 68-533 |
| Cow position: | chr1:89076864-89076391 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 331 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 113, 40 |
| Conread position: | 80-519 |
| Cow position: | chr1:34771720-34771278 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 148, 55 |
| Conread position: | 89-501 |
| Cow position: | chr1:12464871-12464462 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 275 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 129, 64 |
| Conread position: | 97-442 |
| Cow position: | chr1:90976282-90975940 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 99, 43 |
| Conread position: | 97-462 |
| Cow position: | chr1:96277254-96276888 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 121, 48 |
| Conread position: | 101-380 |
| Cow position: | chr1:6788485-6788201 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 117-509 |
| Cow position: | chr1:78096756-78097138 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 148, 14 |
| Conread position: | 119-506 |
| Cow position: | chr1:90621692-90621297 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 137 |
| Conread position: | 126-399 |
| Cow position: | chr1:12978506-12978783 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 102, 165 |
| Conread position: | 143-389 |
| Cow position: | chr1:97090167-97090417 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 98 |
| Conread position: | 155-524 |
| Cow position: | chr1:6228730-6228355 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 116 |
| Conread position: | 157-380 |
| Cow position: | chr1:87440325-87440549 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 113, 206 |
| Conread position: | 162-492 |
| Cow position: | chr1:89448759-89449092 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 56, 278 |
| Conread position: | 163-502 |
| Cow position: | chr1:64572376-64572718 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 242 |
| Conread position: | 167-509 |
| Cow position: | chr1:56618784-56618445 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 61, 110 |
| Conread position: | 169-503 |
| Cow position: | chr1:79640421-79640084 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 177-492 |
| Cow position: | chr1:69551607-69551285 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 235 |
| Conread position: | 200-504 |
| Cow position: | chr1:82513456-82513145 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 166 |
| Conread position: | 228-381 |
| Cow position: | chr1:61560795-61560640 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 228-533 |
| Cow position: | chr1:90904822-90904525 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 173, 48 |
| Conread position: | 233-509 |
| Cow position: | chr1:46143526-46143256 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 181, 115 |
| Conread position: | 239-497 |
| Cow position: | chr1:95072272-95072542 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 42, 123 |
| Conread position: | 242-507 |
| Cow position: | chr1:81481439-81481176 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 29, 160 |
Show alignments to all cow chromosomes.