Cow genome map
| Conread name: | Pig3-SRG8022L11 |
| Conread position: | 155-295 |
| Cow position: | chr10:49862429-49862567 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 169-305 |
| Cow position: | chr10:41760347-41760211 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 38, 88 |
| Conread position: | 169-351 |
| Cow position: | chr10:19679071-19679244 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 171-406 |
| Cow position: | chr10:30746651-30746877 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 172-296 |
| Cow position: | chr10:32080251-32080374 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 172-296 |
| Cow position: | chr10:40744092-40744215 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 172-349 |
| Cow position: | chr10:13315915-13316096 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 172-351 |
| Cow position: | chr10:2694941-2695126 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 172-351 |
| Cow position: | chr10:29252144-29252327 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 132, 46 |
| Conread position: | 172-351 |
| Cow position: | chr10:49923397-49923227 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 172-404 |
| Cow position: | chr10:26209271-26209048 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 172-432 |
| Cow position: | chr10:50042584-50042833 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 172-433 |
| Cow position: | chr10:15115590-15115846 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 33, 85 |
| Conread position: | 172-435 |
| Cow position: | chr10:17176012-17176267 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 144, 35 |
| Conread position: | 174-287 |
| Cow position: | chr10:54819247-54819359 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-289 |
| Cow position: | chr10:11966865-11966753 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 174-292 |
| Cow position: | chr10:53674804-53674924 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-293 |
| Cow position: | chr10:28395323-28395202 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 84 |
| Conread position: | 174-293 |
| Cow position: | chr10:34646468-34646347 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-293 |
| Cow position: | chr10:61922162-61922043 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 81 |
| Conread position: | 174-295 |
| Cow position: | chr10:11112602-11112727 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 174-295 |
| Cow position: | chr10:60697645-60697527 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-295 |
| Cow position: | chr10:61509965-61509843 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 174-296 |
| Cow position: | chr10:17149858-17149983 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-296 |
| Cow position: | chr10:19191738-19191856 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 174-296 |
| Cow position: | chr10:34661345-34661223 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 37, 56 |
| Conread position: | 174-296 |
| Cow position: | chr10:37295694-37295570 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-296 |
| Cow position: | chr10:38205732-38205610 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-296 |
| Cow position: | chr10:54848760-54848880 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 174-297 |
| Cow position: | chr10:6543704-6543828 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 174-304 |
| Cow position: | chr10:2857026-2857154 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 56 |
| Conread position: | 174-306 |
| Cow position: | chr10:6242531-6242400 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 127, 46 |
| Conread position: | 174-310 |
| Cow position: | chr10:55600178-55600043 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-311 |
| Cow position: | chr10:27178474-27178608 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 174-348 |
| Cow position: | chr10:24903006-24902825 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 82 |
| Conread position: | 174-351 |
| Cow position: | chr10:37768283-37768459 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 174-351 |
| Cow position: | chr10:39228126-39228302 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 174-351 |
| Cow position: | chr10:49253345-49253525 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 174-353 |
| Cow position: | chr10:34174999-34174808 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 174-368 |
| Cow position: | chr10:23506509-23506327 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 181, 53 |
| Conread position: | 174-374 |
| Cow position: | chr10:65904224-65904424 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 174-376 |
| Cow position: | chr10:15817813-15817617 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 174-434 |
| Cow position: | chr10:58044153-58043887 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 87 |
| Conread position: | 174-457 |
| Cow position: | chr10:10634197-10634487 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-480 |
| Cow position: | chr10:37426155-37425831 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 175-282 |
| Cow position: | chr10:35731545-35731439 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 175-293 |
| Cow position: | chr10:21422177-21422062 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 175-331 |
| Cow position: | chr10:53405452-53405615 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 30, 83 |
| Conread position: | 175-402 |
| Cow position: | chr10:8449481-8449704 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 87 |
| Conread position: | 176-365 |
| Cow position: | chr10:46886137-46886323 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 124, 79 |
| Conread position: | 176-398 |
| Cow position: | chr10:17077757-17077538 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 132, 77 |
| Conread position: | 176-420 |
| Cow position: | chr10:6852246-6852494 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 171, 79 |
| Conread position: | 178-319 |
| Cow position: | chr10:10148631-10148773 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 80 |
| Conread position: | 185-416 |
| Cow position: | chr10:2985085-2984864 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 20, 73 |
| Conread position: | 205-373 |
| Cow position: | chr10:7089359-7089529 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 51 |
| Conread position: | 205-429 |
| Cow position: | chr10:37442555-37442783 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 48 |
| Conread position: | 208-411 |
| Cow position: | chr10:49456077-49455871 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 83, 45 |
Show alignments to all cow chromosomes.