Cow genome map
| Conread name: | Pig3-SRG8022L11 |
| Conread position: | 166-366 |
| Cow position: | chr13:21277476-21277680 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 45, 92 |
| Conread position: | 169-366 |
| Cow position: | chr13:18172324-18172121 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 89 |
| Conread position: | 169-443 |
| Cow position: | chr13:8350311-8350026 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 37, 85 |
| Conread position: | 172-306 |
| Cow position: | chr13:20217413-20217546 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 87 |
| Conread position: | 172-351 |
| Cow position: | chr13:37803877-37803702 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 87 |
| Conread position: | 172-403 |
| Cow position: | chr13:51940719-51940488 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 172-423 |
| Cow position: | chr13:3209335-3209584 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 39, 128 |
| Conread position: | 173-295 |
| Cow position: | chr13:24586027-24585908 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 174-276 |
| Cow position: | chr13:43480040-43479938 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 174-287 |
| Cow position: | chr13:19610584-19610696 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-287 |
| Cow position: | chr13:48037603-48037491 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-294 |
| Cow position: | chr13:56686414-56686296 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 174-296 |
| Cow position: | chr13:13320780-13320656 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 84 |
| Conread position: | 174-296 |
| Cow position: | chr13:20666406-20666527 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-296 |
| Cow position: | chr13:20784573-20784449 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 174-296 |
| Cow position: | chr13:21188351-21188227 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-297 |
| Cow position: | chr13:28440555-28440679 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 115, 81 |
| Conread position: | 174-304 |
| Cow position: | chr13:19279077-19278946 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 174-307 |
| Cow position: | chr13:15083642-15083512 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 124, 30 |
| Conread position: | 174-315 |
| Cow position: | chr13:23856193-23856053 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 174-319 |
| Cow position: | chr13:19007913-19007772 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 126, 30 |
| Conread position: | 174-324 |
| Cow position: | chr13:51116041-51116192 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 174-325 |
| Cow position: | chr13:17439788-17439937 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 143, 81 |
| Conread position: | 174-351 |
| Cow position: | chr13:6086909-6087091 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 80 |
| Conread position: | 174-351 |
| Cow position: | chr13:18696823-18696646 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 174-351 |
| Cow position: | chr13:37621377-37621552 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 143, 79 |
| Conread position: | 174-351 |
| Cow position: | chr13:45023229-45023400 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 124, 81 |
| Conread position: | 174-362 |
| Cow position: | chr13:20706222-20706417 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 174-363 |
| Cow position: | chr13:23960823-23961000 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 174-363 |
| Cow position: | chr13:40943226-40943028 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 174-382 |
| Cow position: | chr13:54389038-54389251 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 174-414 |
| Cow position: | chr13:20679322-20679071 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 174-435 |
| Cow position: | chr13:52880885-52881139 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 123, 81 |
| Conread position: | 175-283 |
| Cow position: | chr13:57770007-57770114 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 175-287 |
| Cow position: | chr13:41806754-41806640 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 175-295 |
| Cow position: | chr13:15288943-15289061 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 175-295 |
| Cow position: | chr13:33854702-33854824 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 175-351 |
| Cow position: | chr13:55316209-55316400 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 36, 89 |
| Conread position: | 178-296 |
| Cow position: | chr13:16790188-16790068 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 77 |
| Conread position: | 179-387 |
| Cow position: | chr13:16714290-16714496 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 129, 76 |
| Conread position: | 182-295 |
| Cow position: | chr13:22345302-22345414 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 73 |
| Conread position: | 204-349 |
| Cow position: | chr13:5992805-5992667 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 205-350 |
| Cow position: | chr13:19467389-19467535 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 50 |
| Conread position: | 205-363 |
| Cow position: | chr13:47644013-47643856 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 205-442 |
| Cow position: | chr13:32363231-32363468 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 48 |
| Conread position: | 206-421 |
| Cow position: | chr13:26365853-26365647 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 124, 49 |
Show alignments to all cow chromosomes.