Cow genome map
| Conread name: | Pig3-SRG8022L11 |
| Conread position: | 157-365 |
| Cow position: | chr17:35043900-35043680 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 164-286 |
| Cow position: | chr17:10016312-10016434 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 79 |
| Conread position: | 171-304 |
| Cow position: | chr17:40276780-40276914 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 38, 88 |
| Conread position: | 171-412 |
| Cow position: | chr17:21788619-21788380 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 36, 85 |
| Conread position: | 172-295 |
| Cow position: | chr17:9824710-9824834 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 38, 86 |
| Conread position: | 172-295 |
| Cow position: | chr17:29157460-29157582 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 172-305 |
| Cow position: | chr17:32273646-32273510 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 86 |
| Conread position: | 172-370 |
| Cow position: | chr17:12536424-12536225 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 86 |
| Conread position: | 172-421 |
| Cow position: | chr17:5423028-5422773 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 172-464 |
| Cow position: | chr17:18766956-18766669 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 173-384 |
| Cow position: | chr17:33164773-33164567 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 174, 11 |
| Conread position: | 174-287 |
| Cow position: | chr17:1634449-1634334 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 174-293 |
| Cow position: | chr17:39606473-39606594 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-294 |
| Cow position: | chr17:17044289-17044168 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-295 |
| Cow position: | chr17:908783-908906 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 174-295 |
| Cow position: | chr17:21039600-21039723 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-296 |
| Cow position: | chr17:9911803-9911924 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 174-296 |
| Cow position: | chr17:11912460-11912335 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 174-296 |
| Cow position: | chr17:12959149-12959273 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 174-296 |
| Cow position: | chr17:17406178-17406302 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 52 |
| Conread position: | 174-296 |
| Cow position: | chr17:25473237-25473113 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-296 |
| Cow position: | chr17:32989519-32989643 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 174-296 |
| Cow position: | chr17:32993581-32993457 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 174-296 |
| Cow position: | chr17:33793209-33793330 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-303 |
| Cow position: | chr17:17034992-17035122 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-310 |
| Cow position: | chr17:11664542-11664403 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 87 |
| Conread position: | 174-310 |
| Cow position: | chr17:30728547-30728685 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 28, 84 |
| Conread position: | 174-323 |
| Cow position: | chr17:11478812-11478963 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 174-350 |
| Cow position: | chr17:3388869-3389037 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-351 |
| Cow position: | chr17:3097614-3097431 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 174-351 |
| Cow position: | chr17:4105951-4105783 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 174-351 |
| Cow position: | chr17:4121687-4121518 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 174-351 |
| Cow position: | chr17:7810712-7810543 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 174-351 |
| Cow position: | chr17:9713299-9713117 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-351 |
| Cow position: | chr17:24554039-24554226 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-351 |
| Cow position: | chr17:40331810-40331983 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-363 |
| Cow position: | chr17:32333048-32332872 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 174-365 |
| Cow position: | chr17:5767950-5768140 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 37, 52 |
| Conread position: | 174-366 |
| Cow position: | chr17:21268340-21268539 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 174-378 |
| Cow position: | chr17:34791022-34790815 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 85 |
| Conread position: | 174-397 |
| Cow position: | chr17:15340711-15340471 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 84 |
| Conread position: | 174-402 |
| Cow position: | chr17:21325375-21325598 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 85 |
| Conread position: | 174-407 |
| Cow position: | chr17:25901243-25901473 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 84 |
| Conread position: | 174-409 |
| Cow position: | chr17:18934303-18934536 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 174-409 |
| Cow position: | chr17:24895116-24895343 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 174-416 |
| Cow position: | chr17:22017041-22016795 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 34, 59 |
| Conread position: | 174-451 |
| Cow position: | chr17:21718954-21718696 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 175-304 |
| Cow position: | chr17:18109040-18108913 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 108, 80 |
| Conread position: | 175-304 |
| Cow position: | chr17:31037333-31037203 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 81 |
| Conread position: | 175-348 |
| Cow position: | chr17:5743247-5743072 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 36, 81 |
| Conread position: | 175-409 |
| Cow position: | chr17:32138380-32138153 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 177-321 |
| Cow position: | chr17:20392196-20392339 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 177-378 |
| Cow position: | chr17:21003780-21003583 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 139, 71 |
| Conread position: | 177-384 |
| Cow position: | chr17:4286092-4286300 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 123, 78 |
| Conread position: | 198-494 |
| Cow position: | chr17:21206436-21206148 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 205-430 |
| Cow position: | chr17:9117721-9117937 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 50 |
Show alignments to all cow chromosomes.