Cow genome map
| Conread name: | Pig3-SRG8022L11 |
| Conread position: | 128-328 |
| Cow position: | chr18:871587-871785 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 189, 127 |
| Conread position: | 164-376 |
| Cow position: | chr18:8583538-8583740 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 208, 89 |
| Conread position: | 170-349 |
| Cow position: | chr18:41950174-41950342 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 60 |
| Conread position: | 171-369 |
| Cow position: | chr18:21081925-21081730 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 172-295 |
| Cow position: | chr18:15613893-15613769 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 84 |
| Conread position: | 172-411 |
| Cow position: | chr18:1571268-1571036 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 173-349 |
| Cow position: | chr18:52413934-52414102 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 87 |
| Conread position: | 173-404 |
| Cow position: | chr18:39875291-39875059 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 74 |
| Conread position: | 174-287 |
| Cow position: | chr18:12242246-12242359 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 107, 81 |
| Conread position: | 174-289 |
| Cow position: | chr18:17660591-17660474 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-293 |
| Cow position: | chr18:38687053-38687170 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 174-294 |
| Cow position: | chr18:48713520-48713642 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 174-295 |
| Cow position: | chr18:45637443-45637324 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 174-295 |
| Cow position: | chr18:49038431-49038554 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-296 |
| Cow position: | chr18:38937790-38937914 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-296 |
| Cow position: | chr18:41702806-41702927 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 174-297 |
| Cow position: | chr18:10977241-10977117 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 174-297 |
| Cow position: | chr18:20641527-20641402 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 84 |
| Conread position: | 174-304 |
| Cow position: | chr18:45903925-45903797 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-311 |
| Cow position: | chr18:2773423-2773286 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 80 |
| Conread position: | 174-321 |
| Cow position: | chr18:35786025-35786172 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 174-323 |
| Cow position: | chr18:28923878-28923728 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-323 |
| Cow position: | chr18:44917726-44917875 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 174-324 |
| Cow position: | chr18:25647279-25647127 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 78, 52 |
| Conread position: | 174-351 |
| Cow position: | chr18:16378892-16379073 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-351 |
| Cow position: | chr18:53038799-53038979 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 110 |
| Conread position: | 174-369 |
| Cow position: | chr18:47548017-47547832 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 174-381 |
| Cow position: | chr18:36230754-36230543 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 126, 81 |
| Conread position: | 174-399 |
| Cow position: | chr18:51383428-51383201 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 81 |
| Conread position: | 174-403 |
| Cow position: | chr18:41724849-41724628 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 174-418 |
| Cow position: | chr18:48407708-48407948 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-420 |
| Cow position: | chr18:52649378-52649135 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-425 |
| Cow position: | chr18:12270471-12270713 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 81 |
| Conread position: | 174-467 |
| Cow position: | chr18:35367223-35366926 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 175-296 |
| Cow position: | chr18:23630634-23630515 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 175-328 |
| Cow position: | chr18:30794399-30794553 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 131, 76 |
| Conread position: | 175-328 |
| Cow position: | chr18:49324463-49324310 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 132, 80 |
| Conread position: | 175-328 |
| Cow position: | chr18:51190626-51190471 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 100, 80 |
| Conread position: | 175-330 |
| Cow position: | chr18:23505301-23505458 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 83 |
| Conread position: | 175-351 |
| Cow position: | chr18:11672013-11672183 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 176-305 |
| Cow position: | chr18:2765223-2765351 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 177-296 |
| Cow position: | chr18:49603071-49602950 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 177-351 |
| Cow position: | chr18:1954617-1954450 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 81 |
| Conread position: | 181-296 |
| Cow position: | chr18:50004726-50004612 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 203-363 |
| Cow position: | chr18:37810332-37810177 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 204-325 |
| Cow position: | chr18:42715312-42715198 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 205-349 |
| Cow position: | chr18:42978642-42978504 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 205-409 |
| Cow position: | chr18:44206081-44205881 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 96, 50 |
| Conread position: | 218-426 |
| Cow position: | chr18:8390206-8390411 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 37 |
Show alignments to all cow chromosomes.