Cow genome map
| Conread name: | Pig3-SRG8022L11 |
| Conread position: | 148-349 |
| Cow position: | chr2:52398293-52398493 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 110 |
| Conread position: | 172-295 |
| Cow position: | chr2:18997720-18997845 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 172-297 |
| Cow position: | chr2:10439840-10439962 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 172-321 |
| Cow position: | chr2:66094993-66094842 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 172-328 |
| Cow position: | chr2:44025381-44025536 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 128, 81 |
| Conread position: | 172-364 |
| Cow position: | chr2:36424024-36424223 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 172-422 |
| Cow position: | chr2:73353797-73354045 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 149, 35 |
| Conread position: | 172-441 |
| Cow position: | chr2:15219114-15219391 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 39, 87 |
| Conread position: | 173-351 |
| Cow position: | chr2:44191482-44191660 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 32, 85 |
| Conread position: | 173-405 |
| Cow position: | chr2:76562108-76562341 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 112 |
| Conread position: | 174-287 |
| Cow position: | chr2:46247458-46247343 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 174-291 |
| Cow position: | chr2:549324-549208 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-292 |
| Cow position: | chr2:38362362-38362243 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 174-293 |
| Cow position: | chr2:21049324-21049206 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 174-293 |
| Cow position: | chr2:39584452-39584572 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-295 |
| Cow position: | chr2:45542396-45542273 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-295 |
| Cow position: | chr2:46161960-46162083 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-295 |
| Cow position: | chr2:63074849-63074729 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-295 |
| Cow position: | chr2:70704261-70704384 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 174-296 |
| Cow position: | chr2:1762798-1762919 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-296 |
| Cow position: | chr2:31783933-31784056 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 174-296 |
| Cow position: | chr2:38640326-38640450 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-296 |
| Cow position: | chr2:41248574-41248697 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 174-296 |
| Cow position: | chr2:46189093-46188969 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-303 |
| Cow position: | chr2:5604528-5604657 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 59 |
| Conread position: | 174-306 |
| Cow position: | chr2:28301208-28301340 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 63 |
| Conread position: | 174-306 |
| Cow position: | chr2:44222827-44222962 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-319 |
| Cow position: | chr2:44217905-44217760 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 174-321 |
| Cow position: | chr2:40880074-40880222 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 121, 81 |
| Conread position: | 174-330 |
| Cow position: | chr2:1335692-1335534 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 174-340 |
| Cow position: | chr2:24434277-24434110 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 174-340 |
| Cow position: | chr2:47645052-47645215 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 143, 79 |
| Conread position: | 174-344 |
| Cow position: | chr2:74260461-74260635 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 64 |
| Conread position: | 174-349 |
| Cow position: | chr2:45624017-45624193 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 174-349 |
| Cow position: | chr2:72183489-72183304 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 37, 85 |
| Conread position: | 174-351 |
| Cow position: | chr2:1638607-1638787 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 174-351 |
| Cow position: | chr2:21410222-21410393 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 174-351 |
| Cow position: | chr2:47443264-47443436 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 174-354 |
| Cow position: | chr2:39798245-39798439 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 37, 85 |
| Conread position: | 174-363 |
| Cow position: | chr2:83184157-83184354 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-374 |
| Cow position: | chr2:7573501-7573303 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 174-374 |
| Cow position: | chr2:40257409-40257210 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-375 |
| Cow position: | chr2:47624403-47624191 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 83 |
| Conread position: | 174-378 |
| Cow position: | chr2:45642482-45642274 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 83 |
| Conread position: | 174-395 |
| Cow position: | chr2:42927447-42927215 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 66 |
| Conread position: | 174-397 |
| Cow position: | chr2:44168071-44168294 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 173, 81 |
| Conread position: | 174-399 |
| Cow position: | chr2:45784740-45784964 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 86 |
| Conread position: | 174-401 |
| Cow position: | chr2:8821235-8821460 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-402 |
| Cow position: | chr2:47879244-47879479 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-404 |
| Cow position: | chr2:25597492-25597260 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 174-405 |
| Cow position: | chr2:29282911-29283145 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 174-406 |
| Cow position: | chr2:71622044-71621816 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 174-409 |
| Cow position: | chr2:72310008-72309772 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 174-450 |
| Cow position: | chr2:81758037-81758303 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 156, 82 |
| Conread position: | 175-287 |
| Cow position: | chr2:46968185-46968074 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 175-296 |
| Cow position: | chr2:44065581-44065698 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 175-304 |
| Cow position: | chr2:77157341-77157214 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 175-354 |
| Cow position: | chr2:53851441-53851627 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 175-372 |
| Cow position: | chr2:69350561-69350355 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 81 |
| Conread position: | 175-378 |
| Cow position: | chr2:47147912-47148111 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 175-424 |
| Cow position: | chr2:47115915-47115657 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 176-294 |
| Cow position: | chr2:53491446-53491324 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 176-324 |
| Cow position: | chr2:44032394-44032247 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 179-400 |
| Cow position: | chr2:37891483-37891267 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 32, 79 |
| Conread position: | 180-296 |
| Cow position: | chr2:35207923-35208043 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 79 |
| Conread position: | 180-337 |
| Cow position: | chr2:29860015-29860168 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 180-491 |
| Cow position: | chr2:25283124-25283436 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 31, 76 |
| Conread position: | 181-294 |
| Cow position: | chr2:16686558-16686669 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 183-339 |
| Cow position: | chr2:84928169-84928325 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 113, 72 |
| Conread position: | 185-421 |
| Cow position: | chr2:27180106-27180353 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 26, 48 |
| Conread position: | 190-414 |
| Cow position: | chr2:39368870-39369083 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 66 |
| Conread position: | 205-312 |
| Cow position: | chr2:66629225-66629332 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 95, 50 |
Show alignments to all cow chromosomes.