Cow genome map
| Conread name: | Pig3-SRG8022L11 |
| Conread position: | 149-325 |
| Cow position: | chr3:25691982-25692153 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 165-432 |
| Cow position: | chr3:39812020-39812282 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 169-289 |
| Cow position: | chr3:54946104-54946226 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 39, 89 |
| Conread position: | 172-296 |
| Cow position: | chr3:74234162-74234288 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 172-296 |
| Cow position: | chr3:75966805-75966679 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 172-342 |
| Cow position: | chr3:80072105-80072274 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 34, 86 |
| Conread position: | 172-348 |
| Cow position: | chr3:67930207-67930034 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 104, 61 |
| Conread position: | 172-351 |
| Cow position: | chr3:10677665-10677474 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 81, 163 |
| Conread position: | 172-363 |
| Cow position: | chr3:62789199-62789001 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 86 |
| Conread position: | 172-440 |
| Cow position: | chr3:53508587-53508843 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 174-283 |
| Cow position: | chr3:41652354-41652465 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 86 |
| Conread position: | 174-284 |
| Cow position: | chr3:51349801-51349913 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 174-289 |
| Cow position: | chr3:70762142-70762028 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-292 |
| Cow position: | chr3:32585128-32585248 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 174-292 |
| Cow position: | chr3:55272067-55271947 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 174-292 |
| Cow position: | chr3:76922685-76922565 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-293 |
| Cow position: | chr3:10668901-10668780 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 174-294 |
| Cow position: | chr3:23105384-23105262 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-295 |
| Cow position: | chr3:15950935-15950814 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 84 |
| Conread position: | 174-295 |
| Cow position: | chr3:53790558-53790435 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 174-296 |
| Cow position: | chr3:9120823-9120944 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-296 |
| Cow position: | chr3:20677861-20677740 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-296 |
| Cow position: | chr3:23408378-23408256 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 174-296 |
| Cow position: | chr3:60265273-60265152 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-296 |
| Cow position: | chr3:61224766-61224640 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 33, 84 |
| Conread position: | 174-299 |
| Cow position: | chr3:19788852-19788725 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 86 |
| Conread position: | 174-314 |
| Cow position: | chr3:17447634-17447497 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-315 |
| Cow position: | chr3:13507446-13507589 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 34, 94 |
| Conread position: | 174-316 |
| Cow position: | chr3:22165437-22165295 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 174-323 |
| Cow position: | chr3:55984077-55984220 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 174-325 |
| Cow position: | chr3:24371900-24372050 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 81 |
| Conread position: | 174-340 |
| Cow position: | chr3:26874574-26874733 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 16 |
| Conread position: | 174-350 |
| Cow position: | chr3:64648470-64648649 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 85 |
| Conread position: | 174-351 |
| Cow position: | chr3:22716320-22716138 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 86 |
| Conread position: | 174-351 |
| Cow position: | chr3:55189776-55189611 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 86 |
| Conread position: | 174-372 |
| Cow position: | chr3:22232672-22232479 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 122, 33 |
| Conread position: | 174-382 |
| Cow position: | chr3:4549005-4549213 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 85 |
| Conread position: | 174-410 |
| Cow position: | chr3:59604824-59605043 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 179, 81 |
| Conread position: | 174-425 |
| Cow position: | chr3:82629294-82629550 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-434 |
| Cow position: | chr3:45314322-45314571 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 175-295 |
| Cow position: | chr3:56059790-56059912 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 175-296 |
| Cow position: | chr3:60264737-60264614 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 81 |
| Conread position: | 175-351 |
| Cow position: | chr3:76415924-76415744 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 175-408 |
| Cow position: | chr3:70899872-70900098 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 176-310 |
| Cow position: | chr3:16752278-16752145 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 176-312 |
| Cow position: | chr3:3738463-3738597 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 177-289 |
| Cow position: | chr3:10372252-10372363 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 177-292 |
| Cow position: | chr3:44961024-44960907 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 81 |
| Conread position: | 177-512 |
| Cow position: | chr3:39969882-39969543 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 80 |
| Conread position: | 178-324 |
| Cow position: | chr3:44330455-44330308 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 80 |
| Conread position: | 180-368 |
| Cow position: | chr3:5305782-5305965 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 79 |
| Conread position: | 184-286 |
| Cow position: | chr3:68616339-68616238 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 184-349 |
| Cow position: | chr3:59920015-59920178 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 190-304 |
| Cow position: | chr3:53150325-53150441 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 190-432 |
| Cow position: | chr3:28556168-28555928 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 197-324 |
| Cow position: | chr3:27670414-27670546 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 197-400 |
| Cow position: | chr3:13949558-13949356 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 62 |
| Conread position: | 205-349 |
| Cow position: | chr3:28937593-28937446 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 50 |
Show alignments to all cow chromosomes.