Cow genome map
| Conread name: | Pig3-SRG8022L11 |
| Conread position: | 154-363 |
| Cow position: | chr4:62020425-62020214 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 165-304 |
| Cow position: | chr4:61887623-61887762 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 171-296 |
| Cow position: | chr4:38944264-38944139 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 172-311 |
| Cow position: | chr4:34503286-34503429 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 88 |
| Conread position: | 172-324 |
| Cow position: | chr4:49826245-49826400 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 172-351 |
| Cow position: | chr4:19700091-19700262 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 174-283 |
| Cow position: | chr4:13995382-13995491 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 91, 81 |
| Conread position: | 174-287 |
| Cow position: | chr4:16221882-16221767 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-288 |
| Cow position: | chr4:66136610-66136498 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 174-289 |
| Cow position: | chr4:44449511-44449397 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 98, 81 |
| Conread position: | 174-292 |
| Cow position: | chr4:24810454-24810336 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 174-293 |
| Cow position: | chr4:36744575-36744694 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 174-293 |
| Cow position: | chr4:60141522-60141406 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 174-296 |
| Cow position: | chr4:17851258-17851134 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-296 |
| Cow position: | chr4:54541643-54541518 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 174-297 |
| Cow position: | chr4:51728072-51728198 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 174-303 |
| Cow position: | chr4:41907587-41907457 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 85 |
| Conread position: | 174-304 |
| Cow position: | chr4:23600162-23600293 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 174-307 |
| Cow position: | chr4:386397-386267 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 174-307 |
| Cow position: | chr4:59002144-59002011 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 81 |
| Conread position: | 174-311 |
| Cow position: | chr4:54478923-54478788 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 126, 38 |
| Conread position: | 174-312 |
| Cow position: | chr4:19431701-19431564 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 174-314 |
| Cow position: | chr4:60443045-60442908 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-324 |
| Cow position: | chr4:58880966-58880816 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 174-349 |
| Cow position: | chr4:48381376-48381543 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 99, 79 |
| Conread position: | 174-351 |
| Cow position: | chr4:49800689-49800851 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-351 |
| Cow position: | chr4:65919606-65919773 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-404 |
| Cow position: | chr4:8947391-8947633 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 174-422 |
| Cow position: | chr4:20027108-20026857 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 174-428 |
| Cow position: | chr4:44854296-44854053 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 174-432 |
| Cow position: | chr4:19333381-19333636 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 32, 85 |
| Conread position: | 174-470 |
| Cow position: | chr4:54191085-54191371 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 175-295 |
| Cow position: | chr4:38209979-38209857 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 175-299 |
| Cow position: | chr4:561628-561753 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 82 |
| Conread position: | 175-324 |
| Cow position: | chr4:50676174-50676028 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 142, 78 |
| Conread position: | 175-351 |
| Cow position: | chr4:46435320-46435489 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 175-373 |
| Cow position: | chr4:39007503-39007706 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 126, 80 |
| Conread position: | 175-406 |
| Cow position: | chr4:10851454-10851208 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 36, 82 |
| Conread position: | 176-294 |
| Cow position: | chr4:32601834-32601951 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 176-375 |
| Cow position: | chr4:44903291-44903491 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 102, 79 |
| Conread position: | 177-307 |
| Cow position: | chr4:27530116-27530245 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 180-313 |
| Cow position: | chr4:39984410-39984542 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 127, 75 |
| Conread position: | 187-410 |
| Cow position: | chr4:37675623-37675842 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 202-363 |
| Cow position: | chr4:65753224-65753067 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 202-403 |
| Cow position: | chr4:23807975-23808176 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 163, 51 |
| Conread position: | 204-351 |
| Cow position: | chr4:5132361-5132501 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 205-324 |
| Cow position: | chr4:19098501-19098618 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 112, 48 |
| Conread position: | 207-423 |
| Cow position: | chr4:48321491-48321280 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 98, 23 |
Show alignments to all cow chromosomes.