Cow genome map
| Conread name: | Pig3-SRG8022L11 |
| Conread position: | 132-312 |
| Cow position: | chr6:25773213-25773041 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 172-287 |
| Cow position: | chr6:54471891-54471775 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 23, 85 |
| Conread position: | 172-292 |
| Cow position: | chr6:41226790-41226671 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 172-412 |
| Cow position: | chr6:9751014-9750768 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 117, 81 |
| Conread position: | 173-337 |
| Cow position: | chr6:28900367-28900530 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 174-286 |
| Cow position: | chr6:28976998-28976884 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 82 |
| Conread position: | 174-287 |
| Cow position: | chr6:51933596-51933706 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-294 |
| Cow position: | chr6:8966139-8966261 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 174-295 |
| Cow position: | chr6:24468354-24468231 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-296 |
| Cow position: | chr6:12761321-12761444 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 174-296 |
| Cow position: | chr6:44194507-44194384 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 174-296 |
| Cow position: | chr6:47574948-47575072 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 174-297 |
| Cow position: | chr6:45690568-45690443 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-305 |
| Cow position: | chr6:61569674-61569804 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 81 |
| Conread position: | 174-310 |
| Cow position: | chr6:15243297-15243435 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 31, 84 |
| Conread position: | 174-310 |
| Cow position: | chr6:38207448-38207314 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-311 |
| Cow position: | chr6:9302675-9302541 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-323 |
| Cow position: | chr6:1002221-1002071 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 174-345 |
| Cow position: | chr6:60144156-60143987 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-349 |
| Cow position: | chr6:6400996-6401168 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 143, 81 |
| Conread position: | 174-349 |
| Cow position: | chr6:60516868-60517039 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 83 |
| Conread position: | 174-351 |
| Cow position: | chr6:5609403-5609239 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 174-354 |
| Cow position: | chr6:13040482-13040659 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 174-373 |
| Cow position: | chr6:53546077-53546283 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 175-296 |
| Cow position: | chr6:2078772-2078649 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 175-297 |
| Cow position: | chr6:61524162-61524038 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 175-304 |
| Cow position: | chr6:52478368-52478239 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 175-323 |
| Cow position: | chr6:23465990-23465841 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 175-323 |
| Cow position: | chr6:54990958-54990808 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 34, 83 |
| Conread position: | 175-351 |
| Cow position: | chr6:46282961-46282789 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 83 |
| Conread position: | 175-365 |
| Cow position: | chr6:22985812-22985617 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 151 |
| Conread position: | 176-351 |
| Cow position: | chr6:60266139-60265965 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 178-350 |
| Cow position: | chr6:21869603-21869426 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 33, 80 |
| Conread position: | 180-324 |
| Cow position: | chr6:47676062-47676205 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 182-312 |
| Cow position: | chr6:60186613-60186481 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 196-351 |
| Cow position: | chr6:7130816-7130658 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 12, 60 |
| Conread position: | 196-354 |
| Cow position: | chr6:17194278-17194432 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 111, 60 |
| Conread position: | 197-351 |
| Cow position: | chr6:34498807-34498962 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 205-400 |
| Cow position: | chr6:18903976-18903790 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.