Cow genome map
| Conread name: | Pig3-SRG8022L11 |
| Conread position: | 138-296 |
| Cow position: | chrX:32866864-32867028 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 168-407 |
| Cow position: | chrX:29501861-29501619 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 38, 90 |
| Conread position: | 171-283 |
| Cow position: | chrX:4942233-4942118 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 6, 88 |
| Conread position: | 172-287 |
| Cow position: | chrX:11656108-11656225 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 172-288 |
| Cow position: | chrX:20584355-20584473 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 172-363 |
| Cow position: | chrX:23498650-23498455 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 127, 81 |
| Conread position: | 172-369 |
| Cow position: | chrX:25411934-25412131 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 39, 87 |
| Conread position: | 172-430 |
| Cow position: | chrX:18694900-18694646 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 213, 35 |
| Conread position: | 172-465 |
| Cow position: | chrX:42247155-42246859 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 87 |
| Conread position: | 173-340 |
| Cow position: | chrX:4043836-4043675 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 174-275 |
| Cow position: | chrX:12082294-12082192 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 174-289 |
| Cow position: | chrX:9201577-9201694 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 174-291 |
| Cow position: | chrX:4466996-4467116 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-292 |
| Cow position: | chrX:41164643-41164760 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-295 |
| Cow position: | chrX:16984670-16984792 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 174-295 |
| Cow position: | chrX:27668929-27668806 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-295 |
| Cow position: | chrX:31436503-31436626 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-296 |
| Cow position: | chrX:39290388-39290510 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 174-303 |
| Cow position: | chrX:23359082-23358955 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-304 |
| Cow position: | chrX:38006737-38006610 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 174-328 |
| Cow position: | chrX:31312058-31312213 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-328 |
| Cow position: | chrX:32978052-32977898 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 123, 28 |
| Conread position: | 174-328 |
| Cow position: | chrX:35387895-35387739 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 104, 81 |
| Conread position: | 174-349 |
| Cow position: | chrX:40557650-40557468 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-350 |
| Cow position: | chrX:7695780-7695954 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 174-351 |
| Cow position: | chrX:878351-878158 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-351 |
| Cow position: | chrX:38853227-38853403 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 174-351 |
| Cow position: | chrX:40046546-40046377 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 174-351 |
| Cow position: | chrX:40532014-40531834 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 37, 88 |
| Conread position: | 174-353 |
| Cow position: | chrX:34532549-34532712 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 174-354 |
| Cow position: | chrX:36848548-36848363 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 174-355 |
| Cow position: | chrX:22115288-22115119 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 174-418 |
| Cow position: | chrX:34508573-34508816 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 174-424 |
| Cow position: | chrX:6599753-6599520 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 174-439 |
| Cow position: | chrX:20583695-20583957 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 174-448 |
| Cow position: | chrX:27145633-27145906 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 175-293 |
| Cow position: | chrX:13177447-13177326 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 10, 84 |
| Conread position: | 175-296 |
| Cow position: | chrX:10252168-10252048 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 15, 81 |
| Conread position: | 175-296 |
| Cow position: | chrX:16836256-16836136 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 175-296 |
| Cow position: | chrX:27306484-27306607 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 175-296 |
| Cow position: | chrX:34411876-34411999 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 175-296 |
| Cow position: | chrX:40685298-40685175 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 175-297 |
| Cow position: | chrX:42160656-42160777 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 175-306 |
| Cow position: | chrX:2935987-2936116 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 175-369 |
| Cow position: | chrX:42381082-42380900 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 175-376 |
| Cow position: | chrX:20957268-20957471 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 176-294 |
| Cow position: | chrX:34314055-34314175 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 176-295 |
| Cow position: | chrX:29050281-29050400 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 79 |
| Conread position: | 176-304 |
| Cow position: | chrX:1466193-1466321 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 176-400 |
| Cow position: | chrX:27667456-27667684 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 35, 80 |
| Conread position: | 179-349 |
| Cow position: | chrX:616225-616049 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 77 |
| Conread position: | 180-324 |
| Cow position: | chrX:37129304-37129451 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 196-329 |
| Cow position: | chrX:16481516-16481385 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 121, 57 |
| Conread position: | 205-351 |
| Cow position: | chrX:31983522-31983386 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 205-486 |
| Cow position: | chrX:17525804-17525525 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 96, 50 |
Show alignments to all cow chromosomes.