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Cow genome map

           
Conread name:
           
Pig3-SRG8023H08
        

               
Conread position:
               
1-224
               

               
Cow position:
               
chr5:48178951-48178723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
12, 20
               

               
Conread position:
               
2-184
               

               
Cow position:
               
chr5:4551857-4552048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
143, 72
               

               
Conread position:
               
2-209
               

               
Cow position:
               
chr5:14630183-14629965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
2-228
               

               
Cow position:
               
chr5:39675718-39675493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
151, 31
               

               
Conread position:
               
2-232
               

               
Cow position:
               
chr5:15462450-15462676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
155, 26
               

               
Conread position:
               
2-254
               

               
Cow position:
               
chr5:56467429-56467685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
107, 61
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr5:72564483-72564750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr5:34528289-34528641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 26
               

               
Conread position:
               
2-396
               

               
Cow position:
               
chr5:47317243-47316849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 71
               

               
Conread position:
               
3-151
               

               
Cow position:
               
chr5:765448-765596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-151
               

               
Cow position:
               
chr5:34584998-34585146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-151
               

               
Cow position:
               
chr5:75259554-75259702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr5:60947944-60948144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr5:12640503-12640287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
139, 69
               

               
Conread position:
               
3-222
               

               
Cow position:
               
chr5:34915868-34916090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 71
               

               
Conread position:
               
3-222
               

               
Cow position:
               
chr5:54875951-54875728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
150, 31
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr5:19470457-19470227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
140, 75
               

               
Conread position:
               
3-228
               

               
Cow position:
               
chr5:694307-694540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 77
               

               
Conread position:
               
3-228
               

               
Cow position:
               
chr5:14415495-14415736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
3-228
               

               
Cow position:
               
chr5:29504831-29505065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
3-228
               

               
Cow position:
               
chr5:63840418-63840187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
142, 8
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr5:70290211-70290439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
3-231
               

               
Cow position:
               
chr5:56443007-56443246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr5:12352056-12351827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
124, 132
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr5:44054309-44054069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
3-239
               

               
Cow position:
               
chr5:63917681-63917442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr5:65593603-65593861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
42, 63
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr5:27419995-27419743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
74, 60
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr5:30816441-30816708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 175
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr5:72149977-72150236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
67, 32
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chr5:34442067-34441803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
40, 258
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chr5:42667666-42667400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 77
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chr5:68604579-68604849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 77
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr5:54405168-54404900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 39
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr5:47313199-47313468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 258
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr5:60519901-60520155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 27
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr5:14420619-14420349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 217
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr5:34288741-34288477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr5:7921656-7921399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
35, 101
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr5:4218607-4218870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
133, 31
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr5:35145076-35145349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 269
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr5:58460679-58460393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr5:61839914-61840193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 74
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr5:72287193-72286911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 81
               

               
Conread position:
               
3-275
               

               
Cow position:
               
chr5:48224848-48224578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
3-275
               

               
Cow position:
               
chr5:50950279-50950560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr5:51357776-51357496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
142, 43
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr5:6130082-6130360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
149, 61
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr5:23856437-23856153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr5:41531364-41531076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
20, 275
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr5:49820868-49821147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
142, 111
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr5:3281142-3280858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
140, 71
               

               
Conread position:
               
3-286
               

               
Cow position:
               
chr5:65933202-65932910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 96
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr5:47559810-47559519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
145, 238
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr5:64392880-64393179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr5:59443525-59443219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 78
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chr5:27015418-27015724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
119, 43
               

               
Conread position:
               
3-323
               

               
Cow position:
               
chr5:62827029-62826704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 73
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr5:4797587-4797272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
35, 152
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr5:13691850-13691505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 242
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chr5:30486977-30487306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
179, 25
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr5:75829005-75828661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
134, 23
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr5:63964455-63964057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
45, 253
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr5:14314248-14314641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 71
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr5:26467348-26467741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
142, 33
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr5:28927871-28927481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 292
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr5:50533655-50533275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 25
               

               
Conread position:
               
3-385
               

               
Cow position:
               
chr5:34887472-34887081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 84
               

               
Conread position:
               
3-385
               

               
Cow position:
               
chr5:39299254-39299644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
141, 69
               

               
Conread position:
               
3-385
               

               
Cow position:
               
chr5:62107769-62107372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
139, 196
               

               
Conread position:
               
3-391
               

               
Cow position:
               
chr5:14904330-14903948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
146, 31
               

               
Conread position:
               
3-392
               

               
Cow position:
               
chr5:52645354-52644959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
35, 262
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr5:38853085-38853471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
142, 245
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr5:39094279-39094672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 126
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr5:52905762-52905374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
119, 25
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr5:61576265-61576667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 259
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr5:27615228-27615636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
35, 195
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chr5:12323068-12322681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
146, 25
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chr5:18573896-18574298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 201
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chr5:47756494-47756897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 225
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chr5:57327514-57327926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
26, 40
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chr5:75244560-75244152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
142, 29
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr5:46611358-46610972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr5:28330603-28330214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 20
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr5:60952388-60952789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
206, 35
               

               
Conread position:
               
3-404
               

               
Cow position:
               
chr5:15363619-15364016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
142, 33
               

               
Conread position:
               
3-404
               

               
Cow position:
               
chr5:28224181-28224586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 78
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr5:34049837-34050262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr5:6045012-6045441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 272
               

               
Conread position:
               
3-419
               

               
Cow position:
               
chr5:74643935-74643529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
142, 71
               

               
Conread position:
               
3-422
               

               
Cow position:
               
chr5:39258279-39258656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
177, 25
               

               
Conread position:
               
3-423
               

               
Cow position:
               
chr5:4710415-4709999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
152, 32
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr5:35826319-35826757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr5:55176618-55177039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 39
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr5:60715629-60715214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
3-425
               

               
Cow position:
               
chr5:12873474-12873904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
147, 12
               

               
Conread position:
               
3-425
               

               
Cow position:
               
chr5:26377938-26377513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 25
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr5:21040247-21039829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
123, 26
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr5:30276421-30276846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
115, 60
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr5:50599792-50600204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
140, 70
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr5:58519673-58519260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
145, 105
               

               
Conread position:
               
3-427
               

               
Cow position:
               
chr5:16206416-16205998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 50
               

               
Conread position:
               
3-427
               

               
Cow position:
               
chr5:26094443-26094009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 63
               

               
Conread position:
               
3-427
               

               
Cow position:
               
chr5:64524153-64523707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
45, 25
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr5:9090294-9089870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 23
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr5:17087304-17086864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 294
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr5:21617181-21617615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 199
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr5:26097023-26097446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 69
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr5:31469857-31469431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 84
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr5:39936829-39937273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 73
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr5:45226103-45225660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 111
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr5:45845967-45845530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 39
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr5:52165453-52165021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
3-448
               

               
Cow position:
               
chr5:15478834-15479303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 234
               

               
Conread position:
               
3-524
               

               
Cow position:
               
chr5:49558888-49559449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
3-527
               

               
Cow position:
               
chr5:53855430-53855948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 82
               

               
Conread position:
               
3-529
               

               
Cow position:
               
chr5:41532450-41531915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
35, 280
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr5:14538922-14538701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
203, 70
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr5:41604337-41604631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
4-332
               

               
Cow position:
               
chr5:54714015-54713674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
44, 267
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:35209745-35209383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
141, 73
               

               
Conread position:
               
4-372
               

               
Cow position:
               
chr5:3242738-3242380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr5:25231288-25230910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
25, 243
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr5:4507234-4506836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 244
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr5:23140851-23140459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 241
               

               
Conread position:
               
4-524
               

               
Cow position:
               
chr5:63987720-63987191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
5-228
               

               
Cow position:
               
chr5:50729223-50729457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr5:31020386-31020141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
5-278
               

               
Cow position:
               
chr5:24485682-24485428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
144, 23
               

               
Conread position:
               
5-278
               

               
Cow position:
               
chr5:26990121-26990402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr5:45940885-45940556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 118
               

               
Conread position:
               
5-427
               

               
Cow position:
               
chr5:43858700-43858263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 109
               

               
Conread position:
               
5-428
               

               
Cow position:
               
chr5:47601539-47601970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
5-430
               

               
Cow position:
               
chr5:29771246-29771688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
131, 58
               

               
Conread position:
               
5-456
               

               
Cow position:
               
chr5:58855826-58856288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
6-321
               

               
Cow position:
               
chr5:6086833-6086514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
139, 266
               

               
Conread position:
               
6-331
               

               
Cow position:
               
chr5:27403511-27403173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 19
               

               
Conread position:
               
6-384
               

               
Cow position:
               
chr5:9894398-9894010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
66, 110
               

               
Conread position:
               
7-384
               

               
Cow position:
               
chr5:56523904-56524287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 67
               

               
Conread position:
               
7-401
               

               
Cow position:
               
chr5:65887284-65886880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
138, 67
               

               
Conread position:
               
7-427
               

               
Cow position:
               
chr5:17999766-17999339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 273
               

               
Conread position:
               
8-220
               

               
Cow position:
               
chr5:12672291-12672081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
126, 42
               

               
Conread position:
               
8-228
               

               
Cow position:
               
chr5:43329962-43329736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
8-242
               

               
Cow position:
               
chr5:62678389-62678633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
137, 68
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr5:46104209-46103964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
33, 233
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr5:55942667-55942404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
8-264
               

               
Cow position:
               
chr5:42747892-42748152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
141, 25
               

               
Conread position:
               
8-266
               

               
Cow position:
               
chr5:16184823-16185084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 20
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chr5:74015671-74015961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
121, 69
               

               
Conread position:
               
8-369
               

               
Cow position:
               
chr5:16508827-16509204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 66
               

               
Conread position:
               
8-370
               

               
Cow position:
               
chr5:14550855-14550485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 257
               

               
Conread position:
               
8-384
               

               
Cow position:
               
chr5:35763021-35763375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 119
               

               
Conread position:
               
8-384
               

               
Cow position:
               
chr5:57935382-57934995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
8-400
               

               
Cow position:
               
chr5:33414674-33414282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 69
               

               
Conread position:
               
8-400
               

               
Cow position:
               
chr5:65601194-65601585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 20
               

               
Conread position:
               
8-420
               

               
Cow position:
               
chr5:30302629-30303041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 75
               

               
Conread position:
               
8-427
               

               
Cow position:
               
chr5:53055822-53055404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
143, 95
               

               
Conread position:
               
8-428
               

               
Cow position:
               
chr5:65941522-65941091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 51
               

               
Conread position:
               
8-531
               

               
Cow position:
               
chr5:5111346-5110808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 262
               

               
Conread position:
               
9-420
               

               
Cow position:
               
chr5:67243655-67244068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
26, 216
               

               
Conread position:
               
11-216
               

               
Cow position:
               
chr5:22934722-22934509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
127, 63
               

               
Conread position:
               
11-270
               

               
Cow position:
               
chr5:27690329-27690056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
30, 208
               

               
Conread position:
               
11-384
               

               
Cow position:
               
chr5:58793881-58793494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 268
               

               
Conread position:
               
11-384
               

               
Cow position:
               
chr5:64139297-64139673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
11-396
               

               
Cow position:
               
chr5:32394332-32394724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
11-427
               

               
Cow position:
               
chr5:21524898-21525316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 257
               

               
Conread position:
               
11-427
               

               
Cow position:
               
chr5:42063937-42064362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 63
               

               
Conread position:
               
11-432
               

               
Cow position:
               
chr5:29827787-29828210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 265
               

               
Conread position:
               
12-263
               

               
Cow position:
               
chr5:44583383-44583134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 62
               

               
Conread position:
               
12-416
               

               
Cow position:
               
chr5:24348849-24349254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 16
               

               
Conread position:
               
12-482
               

               
Cow position:
               
chr5:55756706-55756204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
13-226
               

               
Cow position:
               
chr5:69099262-69099487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
14-184
               

               
Cow position:
               
chr5:30347225-30347044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
14-271
               

               
Cow position:
               
chr5:3491938-3492197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 126
               

               
Conread position:
               
14-337
               

               
Cow position:
               
chr5:15598497-15598173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 151
               

               
Conread position:
               
14-415
               

               
Cow position:
               
chr5:20783363-20783766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
15-251
               

               
Cow position:
               
chr5:58229441-58229687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
15-284
               

               
Cow position:
               
chr5:36793774-36794049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 17
               

               
Conread position:
               
15-384
               

               
Cow position:
               
chr5:20407925-20407565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
130, 58
               

               
Conread position:
               
15-397
               

               
Cow position:
               
chr5:27103055-27102668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 148
               

               
Conread position:
               
15-508
               

               
Cow position:
               
chr5:56070591-56071094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
23, 32
               

               
Conread position:
               
16-337
               

               
Cow position:
               
chr5:34638624-34638946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 244
               

               
Conread position:
               
16-508
               

               
Cow position:
               
chr5:35208004-35208494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 22
               

               
Conread position:
               
17-226
               

               
Cow position:
               
chr5:37366630-37366856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
19-234
               

               
Cow position:
               
chr5:59873663-59873441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
126, 13
               

               
Conread position:
               
19-370
               

               
Cow position:
               
chr5:62870293-62869943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
126, 64
               

               
Conread position:
               
20-436
               

               
Cow position:
               
chr5:19278950-19278545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
20-563
               

               
Cow position:
               
chr5:50821531-50822069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 104
               

               
Conread position:
               
21-261
               

               
Cow position:
               
chr5:43474591-43474839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
22-194
               

               
Cow position:
               
chr5:25935699-25935875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
123, 41
               

               
Conread position:
               
22-228
               

               
Cow position:
               
chr5:43457771-43457559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
119, 52
               

               
Conread position:
               
22-281
               

               
Cow position:
               
chr5:6575837-6575580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
132, 9
               

               
Conread position:
               
23-304
               

               
Cow position:
               
chr5:50975633-50975931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
102, 49
               

               
Conread position:
               
23-332
               

               
Cow position:
               
chr5:32140959-32140651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 35
               

               
Conread position:
               
24-428
               

               
Cow position:
               
chr5:67932716-67932312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
26-278
               

               
Cow position:
               
chr5:7140345-7140100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
26-393
               

               
Cow position:
               
chr5:27179403-27179779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 113
               

               
Conread position:
               
26-531
               

               
Cow position:
               
chr5:59326079-59325586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 48
               

               
Conread position:
               
28-377
               

               
Cow position:
               
chr5:65588463-65588805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
130, 46
               

               
Conread position:
               
29-227
               

               
Cow position:
               
chr5:63388547-63388750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
114, 6
               

               
Conread position:
               
30-426
               

               
Cow position:
               
chr5:64176367-64175970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
32-239
               

               
Cow position:
               
chr5:46323057-46322842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
113, 146
               

               
Conread position:
               
32-270
               

               
Cow position:
               
chr5:32956335-32956095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
117, 40
               

               
Conread position:
               
33-281
               

               
Cow position:
               
chr5:4347955-4347713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
153, 40
               

               
Conread position:
               
34-227
               

               
Cow position:
               
chr5:66296995-66297194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
34-428
               

               
Cow position:
               
chr5:21828621-21829025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 229
               

               
Conread position:
               
35-189
               

               
Cow position:
               
chr5:9498147-9498301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr5:31786011-31786176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
108, 49
               

               
Conread position:
               
35-214
               

               
Cow position:
               
chr5:39419025-39418840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
35-216
               

               
Cow position:
               
chr5:62261633-62261811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
122, 28
               

               
Conread position:
               
35-260
               

               
Cow position:
               
chr5:58144848-58144610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
35-268
               

               
Cow position:
               
chr5:32963871-32963633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
114, 39
               

               
Conread position:
               
35-274
               

               
Cow position:
               
chr5:51999977-52000227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
110, 39
               

               
Conread position:
               
35-283
               

               
Cow position:
               
chr5:72310471-72310720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 125
               

               
Conread position:
               
35-323
               

               
Cow position:
               
chr5:34115420-34115701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 99
               

               
Conread position:
               
35-419
               

               
Cow position:
               
chr5:55967125-55966734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
110, 230
               

               
Conread position:
               
35-420
               

               
Cow position:
               
chr5:54350603-54350211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 119
               

               
Conread position:
               
35-421
               

               
Cow position:
               
chr5:27306076-27306454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 19
               

               
Conread position:
               
35-430
               

               
Cow position:
               
chr5:35684692-35685097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
107, 178
               

               
Conread position:
               
35-433
               

               
Cow position:
               
chr5:44994279-44993886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 39
               

               
Conread position:
               
35-448
               

               
Cow position:
               
chr5:26477235-26476840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
247, 97
               

               
Conread position:
               
35-458
               

               
Cow position:
               
chr5:37377636-37378037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
307, 38
               

               
Conread position:
               
35-524
               

               
Cow position:
               
chr5:43992083-43992577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
36-216
               

               
Cow position:
               
chr5:24837181-24837001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 32
               

               
Conread position:
               
36-218
               

               
Cow position:
               
chr5:6032997-6033187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
36-222
               

               
Cow position:
               
chr5:33537653-33537840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
117, 21
               

               
Conread position:
               
36-229
               

               
Cow position:
               
chr5:73252855-73253050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
36-232
               

               
Cow position:
               
chr5:24642963-24642765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
36-254
               

               
Cow position:
               
chr5:71504887-71505109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
118, 37
               

               
Conread position:
               
36-268
               

               
Cow position:
               
chr5:33467283-33467043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
36-274
               

               
Cow position:
               
chr5:34922076-34921832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
107, 159
               

               
Conread position:
               
36-276
               

               
Cow position:
               
chr5:37714146-37713890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
92, 191
               

               
Conread position:
               
36-277
               

               
Cow position:
               
chr5:40928214-40927974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
117, 51
               

               
Conread position:
               
36-278
               

               
Cow position:
               
chr5:37645831-37646081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
36-286
               

               
Cow position:
               
chr5:55088904-55089161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
114, 47
               

               
Conread position:
               
36-292
               

               
Cow position:
               
chr5:55989500-55989770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 158
               

               
Conread position:
               
36-298
               

               
Cow position:
               
chr5:40357112-40356831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
12, 80
               

               
Conread position:
               
36-337
               

               
Cow position:
               
chr5:53835472-53835779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
21, 156
               

               
Conread position:
               
36-361
               

               
Cow position:
               
chr5:42744556-42744871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
121, 41
               

               
Conread position:
               
36-370
               

               
Cow position:
               
chr5:37814382-37814725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
98, 163
               

               
Conread position:
               
36-426
               

               
Cow position:
               
chr5:72903465-72903080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
121, 41
               

               
Conread position:
               
36-433
               

               
Cow position:
               
chr5:32339216-32338803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
99, 38
               

               
Conread position:
               
36-513
               

               
Cow position:
               
chr5:34300684-34301159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
37-323
               

               
Cow position:
               
chr5:60126135-60126421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
116, 23
               

               
Conread position:
               
37-370
               

               
Cow position:
               
chr5:73079972-73080304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
201, 68
               

               
Conread position:
               
37-524
               

               
Cow position:
               
chr5:25035467-25035028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
198, 90
               

               
Conread position:
               
38-263
               

               
Cow position:
               
chr5:51076884-51076654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
41, 155
               

               
Conread position:
               
38-266
               

               
Cow position:
               
chr5:56433562-56433801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
102, 35
               

               
Conread position:
               
38-269
               

               
Cow position:
               
chr5:43738187-43737955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
38-274
               

               
Cow position:
               
chr5:30639089-30638859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
117, 35
               

               
Conread position:
               
38-278
               

               
Cow position:
               
chr5:2500420-2500173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
111, 35
               

               
Conread position:
               
38-380
               

               
Cow position:
               
chr5:75437136-75436778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
105, 242
               

               
Conread position:
               
38-425
               

               
Cow position:
               
chr5:57074574-57074177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 224
               

               
Conread position:
               
38-428
               

               
Cow position:
               
chr5:30844873-30845266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
107, 19
               

               
Conread position:
               
38-433
               

               
Cow position:
               
chr5:11668417-11668022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 36
               

               
Conread position:
               
38-509
               

               
Cow position:
               
chr5:38832878-38833366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
31, 239
               

               
Conread position:
               
39-301
               

               
Cow position:
               
chr5:9859956-9859685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
106, 42
               

               
Conread position:
               
40-425
               

               
Cow position:
               
chr5:30253508-30253896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 34
               

               
Conread position:
               
41-427
               

               
Cow position:
               
chr5:29353365-29352971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
104, 33
               

               
Conread position:
               
41-430
               

               
Cow position:
               
chr5:17063330-17062921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
98, 233
               

               
Conread position:
               
42-270
               

               
Cow position:
               
chr5:36854977-36855208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
147, 101
               

               
Conread position:
               
42-391
               

               
Cow position:
               
chr5:20127819-20128172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
42-424
               

               
Cow position:
               
chr5:41164853-41165242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 217
               

               
Conread position:
               
42-426
               

               
Cow position:
               
chr5:6839314-6838923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
103, 191
               

               
Conread position:
               
43-274
               

               
Cow position:
               
chr5:28324111-28324363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
43-428
               

               
Cow position:
               
chr5:20779614-20779239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
114, 29
               

               
Conread position:
               
43-428
               

               
Cow position:
               
chr5:42777530-42777907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
102, 218
               

               
Conread position:
               
44-261
               

               
Cow position:
               
chr5:54064546-54064769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
104, 204
               

               
Conread position:
               
44-262
               

               
Cow position:
               
chr5:65776619-65776390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
101, 221
               

               
Conread position:
               
44-263
               

               
Cow position:
               
chr5:45036787-45037015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
44-384
               

               
Cow position:
               
chr5:15426295-15426651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
100, 39
               

               
Conread position:
               
44-421
               

               
Cow position:
               
chr5:4032222-4031835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
109, 81
               

               
Conread position:
               
44-428
               

               
Cow position:
               
chr5:24996457-24996065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
101, 43
               

               
Conread position:
               
45-259
               

               
Cow position:
               
chr5:21964059-21964278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
45-296
               

               
Cow position:
               
chr5:41636641-41636900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
108, 29
               

               
Conread position:
               
46-229
               

               
Cow position:
               
chr5:16938239-16938049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
107, 78
               

               
Conread position:
               
46-275
               

               
Cow position:
               
chr5:40388097-40387867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
193, 86
               

               
Conread position:
               
46-350
               

               
Cow position:
               
chr5:12709655-12709962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
107, 28
               

               
Conread position:
               
46-400
               

               
Cow position:
               
chr5:64137020-64137385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 231
               

               
Conread position:
               
46-422
               

               
Cow position:
               
chr5:64758998-64758615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
47-298
               

               
Cow position:
               
chr5:26367799-26368061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
105, 215
               

               
Conread position:
               
47-319
               

               
Cow position:
               
chr5:22243015-22242728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
98, 40
               

               
Conread position:
               
47-427
               

               
Cow position:
               
chr5:36868515-36868892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 116
               

               
Conread position:
               
47-551
               

               
Cow position:
               
chr5:3771616-3772132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 229
               

               
Conread position:
               
48-273
               

               
Cow position:
               
chr5:16025689-16025457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
48-274
               

               
Cow position:
               
chr5:46122578-46122347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
48-319
               

               
Cow position:
               
chr5:28926414-28926136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
97, 35
               

               
Conread position:
               
48-391
               

               
Cow position:
               
chr5:32697042-32696703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
109, 78
               

               
Conread position:
               
49-259
               

               
Cow position:
               
chr5:71454824-71454613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
22, 164
               

               
Conread position:
               
50-356
               

               
Cow position:
               
chr5:56820487-56820179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
53-401
               

               
Cow position:
               
chr5:5257521-5257157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
88, 135
               

               
Conread position:
               
53-410
               

               
Cow position:
               
chr5:19813436-19813081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
20, 37
               

               
Conread position:
               
54-419
               

               
Cow position:
               
chr5:15722277-15721925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
285, 27
               

               
Conread position:
               
55-258
               

               
Cow position:
               
chr5:741171-740953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
56-218
               

               
Cow position:
               
chr5:5848408-5848243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
56-267
               

               
Cow position:
               
chr5:56028751-56028531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
56-337
               

               
Cow position:
               
chr5:64823534-64823249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
89, 167
               

               
Conread position:
               
56-396
               

               
Cow position:
               
chr5:40152254-40152610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
91, 210
               

               
Conread position:
               
57-263
               

               
Cow position:
               
chr5:31434045-31434255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
92, 179
               

               
Conread position:
               
57-390
               

               
Cow position:
               
chr5:2309785-2309437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
14, 221
               

               
Conread position:
               
59-224
               

               
Cow position:
               
chr5:66281011-66280838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
59-426
               

               
Cow position:
               
chr5:62142452-62142833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 157
               

               
Conread position:
               
59-427
               

               
Cow position:
               
chr5:7044929-7044549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
24, 31
               

               
Conread position:
               
60-260
               

               
Cow position:
               
chr5:57271483-57271274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
61-414
               

               
Cow position:
               
chr5:26262890-26262535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 53
               

               
Conread position:
               
62-422
               

               
Cow position:
               
chr5:8024407-8024051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
63-265
               

               
Cow position:
               
chr5:35235923-35235713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
86, 146
               

               
Conread position:
               
64-263
               

               
Cow position:
               
chr5:71158477-71158267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 147
               

               
Conread position:
               
64-396
               

               
Cow position:
               
chr5:45803847-45804185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
81, 65
               

               
Conread position:
               
64-428
               

               
Cow position:
               
chr5:35969329-35969690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 145
               

               
Conread position:
               
66-266
               

               
Cow position:
               
chr5:47547928-47547720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
66-452
               

               
Cow position:
               
chr5:54060073-54060456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
55, 20
               

               
Conread position:
               
67-260
               

               
Cow position:
               
chr5:18898773-18898967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 134
               

               
Conread position:
               
67-263
               

               
Cow position:
               
chr5:43395348-43395148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
86, 45
               

               
Conread position:
               
67-278
               

               
Cow position:
               
chr5:40039981-40039762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
78, 198
               

               
Conread position:
               
67-423
               

               
Cow position:
               
chr5:71494606-71494974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
48, 169
               

               
Conread position:
               
67-486
               

               
Cow position:
               
chr5:57736904-57737309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
88, 141
               

               
Conread position:
               
68-274
               

               
Cow position:
               
chr5:29212739-29212948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
77, 70
               

               
Conread position:
               
68-377
               

               
Cow position:
               
chr5:11427451-11427127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
77, 197
               

               
Conread position:
               
70-427
               

               
Cow position:
               
chr5:44049495-44049855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
85, 170
               

               
Conread position:
               
70-428
               

               
Cow position:
               
chr5:51053855-51053490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
83, 149
               

               
Conread position:
               
73-263
               

               
Cow position:
               
chr5:8994770-8994573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
76, 123
               

               
Conread position:
               
73-265
               

               
Cow position:
               
chr5:72845977-72845783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
82, 58
               

               
Conread position:
               
73-267
               

               
Cow position:
               
chr5:35449049-35449245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
76, 139
               

               
Conread position:
               
74-529
               

               
Cow position:
               
chr5:23169022-23168572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 61
               

               
Conread position:
               
78-262
               

               
Cow position:
               
chr5:56518409-56518217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
79-270
               

               
Cow position:
               
chr5:75230485-75230678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 144
               

               
Conread position:
               
79-424
               

               
Cow position:
               
chr5:57575567-57575925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 194
               

               
Conread position:
               
80-417
               

               
Cow position:
               
chr5:69731320-69731647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
202, 89
               

               
Conread position:
               
81-304
               

               
Cow position:
               
chr5:46499102-46499327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
73, 177
               

               
Conread position:
               
82-424
               

               
Cow position:
               
chr5:34561813-34562172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 204
               

               
Conread position:
               
83-388
               

               
Cow position:
               
chr5:8163018-8162701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 195
               

               
Conread position:
               
84-396
               

               
Cow position:
               
chr5:22643411-22643106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
69, 122
               

               
Conread position:
               
84-396
               

               
Cow position:
               
chr5:34977031-34976717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
96, 11
               

               
Conread position:
               
85-403
               

               
Cow position:
               
chr5:17371893-17371567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
85-508
               

               
Cow position:
               
chr5:21906892-21906478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
96, 146
               

               
Conread position:
               
86-263
               

               
Cow position:
               
chr5:4220789-4220979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
87-239
               

               
Cow position:
               
chr5:50870351-50870514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr5:69461144-69461490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 149
               

               
Conread position:
               
88-384
               

               
Cow position:
               
chr5:48010036-48009746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
57, 151
               

               
Conread position:
               
88-403
               

               
Cow position:
               
chr5:52040509-52040191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
57, 158
               

               
Conread position:
               
88-427
               

               
Cow position:
               
chr5:57591501-57591844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
57, 129
               

               
Conread position:
               
88-428
               

               
Cow position:
               
chr5:30178700-30178348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
57, 176
               

               
Conread position:
               
89-270
               

               
Cow position:
               
chr5:1678211-1678391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
91-263
               

               
Cow position:
               
chr5:39242376-39242204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
64, 146
               

               
Conread position:
               
91-274
               

               
Cow position:
               
chr5:17644842-17644650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
94-428
               

               
Cow position:
               
chr5:37808848-37808504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
93, 57
               

               
Conread position:
               
101-290
               

               
Cow position:
               
chr5:45026094-45025901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 129
               

               
Conread position:
               
103-231
               

               
Cow position:
               
chr5:23208929-23208796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
103-361
               

               
Cow position:
               
chr5:3639656-3639404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
82, 50
               

               
Conread position:
               
103-396
               

               
Cow position:
               
chr5:52667853-52668162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
103-416
               

               
Cow position:
               
chr5:6286601-6286289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
103-457
               

               
Cow position:
               
chr5:28957791-28957439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 145
               

               
Conread position:
               
104-278
               

               
Cow position:
               
chr5:41713136-41713305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 49
               

               
Conread position:
               
104-319
               

               
Cow position:
               
chr5:3549951-3549737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
105-277
               

               
Cow position:
               
chr5:41452839-41452661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 107
               

               
Conread position:
               
105-479
               

               
Cow position:
               
chr5:59115208-59115583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
40, 171
               

               
Conread position:
               
107-317
               

               
Cow position:
               
chr5:40169357-40169146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 163
               

               
Conread position:
               
107-428
               

               
Cow position:
               
chr5:55955735-55956070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
109-422
               

               
Cow position:
               
chr5:64697612-64697934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
114-274
               

               
Cow position:
               
chr5:19294640-19294487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
114-298
               

               
Cow position:
               
chr5:41486901-41486714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
5, 161
               

               
Conread position:
               
114-385
               

               
Cow position:
               
chr5:65967895-65967617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 126
               

               
Conread position:
               
114-428
               

               
Cow position:
               
chr5:30629321-30628999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 148
               

               
Conread position:
               
114-458
               

               
Cow position:
               
chr5:30950083-30949724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
34, 162
               

               
Conread position:
               
117-266
               

               
Cow position:
               
chr5:71579013-71579172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
117-379
               

               
Cow position:
               
chr5:66581803-66582072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 148
               

               
Conread position:
               
117-383
               

               
Cow position:
               
chr5:46426011-46425743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
117-428
               

               
Cow position:
               
chr5:45397418-45397727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
121-266
               

               
Cow position:
               
chr5:44849879-44849732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
124-420
               

               
Cow position:
               
chr5:47696587-47696300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
158, 10
               

               
Conread position:
               
125-394
               

               
Cow position:
               
chr5:65883923-65883650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
9, 131
               

               
Conread position:
               
125-427
               

               
Cow position:
               
chr5:71722918-71723233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
9, 135
               

               
Conread position:
               
126-426
               

               
Cow position:
               
chr5:35459437-35459136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
113, 9
               

               
Conread position:
               
126-428
               

               
Cow position:
               
chr5:66972281-66972587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 8
               

               
Conread position:
               
127-427
               

               
Cow position:
               
chr5:35247256-35246953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 85
               

               
Conread position:
               
129-420
               

               
Cow position:
               
chr5:44447011-44446715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 127
               

               
Conread position:
               
133-366
               

               
Cow position:
               
chr5:14629953-14629715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 121
               

               
Conread position:
               
133-390
               

               
Cow position:
               
chr5:67540343-67540082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 104
               

               
Conread position:
               
133-400
               

               
Cow position:
               
chr5:19335924-19335652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
135-426
               

               
Cow position:
               
chr5:18288993-18289278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
51, 130
               

               
Conread position:
               
140-517
               

               
Cow position:
               
chr5:54768043-54767664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
18, 121
               

               
Conread position:
               
141-445
               

               
Cow position:
               
chr5:14473547-14473227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
143-419
               

               
Cow position:
               
chr5:56680119-56680405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
8, 12
               

               
Conread position:
               
143-457
               

               
Cow position:
               
chr5:63427136-63426817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 124
               

               
Conread position:
               
143-520
               

               
Cow position:
               
chr5:51935056-51935442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
22, 129
               

               
Conread position:
               
147-420
               

               
Cow position:
               
chr5:49474668-49474394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 10
               

               
Conread position:
               
154-541
               

               
Cow position:
               
chr5:49440989-49440610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
157-529
               

               
Cow position:
               
chr5:40117029-40117400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
163-302
               

               
Cow position:
               
chr5:29895090-29895226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
119, 40
               

               
Conread position:
               
163-421
               

               
Cow position:
               
chr5:35125946-35126206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
76, 8
               

               
Conread position:
               
163-424
               

               
Cow position:
               
chr5:60183693-60183960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 105
               

               
Conread position:
               
163-427
               

               
Cow position:
               
chr5:19523789-19524057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
163-486
               

               
Cow position:
               
chr5:13717679-13717363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
163-516
               

               
Cow position:
               
chr5:58446695-58447046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
72, 104
               

               
Conread position:
               
163-520
               

               
Cow position:
               
chr5:23678812-23678459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
164-428
               

               
Cow position:
               
chr5:43371305-43371039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
165-400
               

               
Cow position:
               
chr5:64168346-64168110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
165-524
               

               
Cow position:
               
chr5:41293974-41294324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 94
               

               
Conread position:
               
166-427
               

               
Cow position:
               
chr5:53946790-53947054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
57, 120
               

               
Conread position:
               
167-428
               

               
Cow position:
               
chr5:12557396-12557129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
168-428
               

               
Cow position:
               
chr5:36039107-36038844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
71, 51
               

               
Conread position:
               
172-533
               

               
Cow position:
               
chr5:55019194-55019563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 65
               

               
Conread position:
               
174-428
               

               
Cow position:
               
chr5:57640067-57639819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr5:59873187-59872808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
179-455
               

               
Cow position:
               
chr5:1087288-1087015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
183-384
               

               
Cow position:
               
chr5:43402812-43403018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
209-557
               

               
Cow position:
               
chr5:29912357-29912700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
73, 46
               

               
Conread position:
               
261-525
               

               
Cow position:
               
chr5:24136700-24136961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
270-520
               

               
Cow position:
               
chr5:44874189-44874444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 9
               

               
Conread position:
               
287-518
               

               
Cow position:
               
chr5:35647355-35647596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
290-525
               

               
Cow position:
               
chr5:56428296-56428064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
346-522
               

               
Cow position:
               
chr5:52063293-52063119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
346-524
               

               
Cow position:
               
chr5:54067963-54067775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
346-529
               

               
Cow position:
               
chr5:25531287-25531459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
347-524
               

               
Cow position:
               
chr5:68593986-68594161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
348-524
               

               
Cow position:
               
chr5:50799824-50800001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
353-531
               

               
Cow position:
               
chr5:29831461-29831284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
354-521
               

               
Cow position:
               
chr5:5028812-5028979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
397-531
               

               
Cow position:
               
chr5:45419992-45419856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
400-526
               

               
Cow position:
               
chr5:61811317-61811444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
402-531
               

               
Cow position:
               
chr5:9859273-9859143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
405-527
               

               
Cow position:
               
chr5:9368450-9368332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
407-525
               

               
Cow position:
               
chr5:23206817-23206699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.