Cow genome map

Conread name: Pig3-SRG8027B03

Conread position: 1-485
Cow position: chr10:21489013-21488538 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 140

Conread position: 1-485
Cow position: chr10:22103300-22102816 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 273

Conread position: 1-492
Cow position: chr10:20369071-20369535 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 123

Conread position: 2-489
Cow position: chr10:34665673-34666164 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 195

Conread position: 2-490
Cow position: chr10:14805933-14805424 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 295

Conread position: 2-490
Cow position: chr10:39814332-39814820 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 275

Conread position: 2-490
Cow position: chr10:57555272-57555757 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 230

Conread position: 3-485
Cow position: chr10:29732805-29732323 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 134

Conread position: 4-292
Cow position: chr10:44670601-44670888 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 42, 104

Conread position: 4-296
Cow position: chr10:14864019-14863730 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 42, 105

Conread position: 4-298
Cow position: chr10:36468117-36468404 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 154

Conread position: 4-303
Cow position: chr10:22574769-22575069 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 49, 110

Conread position: 4-309
Cow position: chr10:11822943-11822637 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 139

Conread position: 4-310
Cow position: chr10:20374351-20374658 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 104

Conread position: 4-310
Cow position: chr10:57503531-57503231 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 237, 54

Conread position: 4-312
Cow position: chr10:54127614-54127306 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 123

Conread position: 4-317
Cow position: chr10:31045469-31045784 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 210

Conread position: 4-328
Cow position: chr10:22249751-22250077 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 269

Conread position: 4-352
Cow position: chr10:38842223-38841876 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 123

Conread position: 4-386
Cow position: chr10:53320192-53320571 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 262
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 43, 117

Conread position: 4-388
Cow position: chr10:28529333-28529725 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 147

Conread position: 4-420
Cow position: chr10:6535770-6535364 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 150

Conread position: 4-426
Cow position: chr10:39209814-39209391 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 209

Conread position: 4-440
Cow position: chr10:56393965-56394411 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 286
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 42, 300

Conread position: 4-441
Cow position: chr10:6556597-6556156 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 270

Conread position: 4-449
Cow position: chr10:8325044-8325498 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 169

Conread position: 4-484
Cow position: chr10:32702821-32702339 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 270

Conread position: 4-484
Cow position: chr10:64220381-64220866 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 208

Conread position: 4-485
Cow position: chr10:1379561-1379078 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 192

Conread position: 4-485
Cow position: chr10:14853912-14853433 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 148

Conread position: 4-485
Cow position: chr10:19142552-19143034 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 123

Conread position: 4-485
Cow position: chr10:37771950-37771466 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 216

Conread position: 4-485
Cow position: chr10:38343312-38343784 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 50

Conread position: 4-485
Cow position: chr10:40642007-40641529 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 197

Conread position: 4-485
Cow position: chr10:41150665-41151152 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 206

Conread position: 4-485
Cow position: chr10:41635449-41634973 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 199

Conread position: 4-485
Cow position: chr10:57987946-57988414 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 205

Conread position: 4-485
Cow position: chr10:62406703-62407200 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 287

Conread position: 4-489
Cow position: chr10:23409184-23409670 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 271

Conread position: 4-489
Cow position: chr10:28255344-28255830 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 154

Conread position: 4-489
Cow position: chr10:39039252-39039737 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 60

Conread position: 4-490
Cow position: chr10:10172806-10172313 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 276

Conread position: 4-490
Cow position: chr10:19841741-19841257 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 67

Conread position: 4-490
Cow position: chr10:22343528-22343055 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 123

Conread position: 4-490
Cow position: chr10:22347023-22346538 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 124

Conread position: 4-490
Cow position: chr10:25651354-25651851 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 211

Conread position: 4-490
Cow position: chr10:41878987-41878502 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 22

Conread position: 4-490
Cow position: chr10:55095329-55094844 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 65

Conread position: 4-497
Cow position: chr10:21079686-21079180 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 166

Conread position: 4-497
Cow position: chr10:38850327-38849838 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 136

Conread position: 4-500
Cow position: chr10:42642655-42642153 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 78

Conread position: 4-502
Cow position: chr10:21738690-21739195 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 210

Conread position: 4-502
Cow position: chr10:33871351-33870845 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 170

Conread position: 4-502
Cow position: chr10:41159478-41158973 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-502
Cow position: chr10:41569166-41568661 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-505
Cow position: chr10:31540181-31539689 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 69

Conread position: 4-505
Cow position: chr10:41773561-41774052 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 8

Conread position: 4-505
Cow position: chr10:58811695-58812206 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 290

Conread position: 5-316
Cow position: chr10:18039688-18039379 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 24

Conread position: 6-452
Cow position: chr10:51781376-51781830 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 16

Conread position: 6-485
Cow position: chr10:7896420-7896899 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 6

Conread position: 6-502
Cow position: chr10:17434406-17433928 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 43

Conread position: 6-502
Cow position: chr10:22908408-22908904 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 6

Conread position: 6-503
Cow position: chr10:19705570-19706078 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 6

Conread position: 7-485
Cow position: chr10:29844600-29845077 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 119

Conread position: 7-491
Cow position: chr10:62586208-62585753 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 310
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 9

Conread position: 8-324
Cow position: chr10:21516947-21517271 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 239
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 39, 10

Conread position: 11-284
Cow position: chr10:67143147-67143422 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 44

Conread position: 12-485
Cow position: chr10:41386930-41387402 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 57

Conread position: 12-486
Cow position: chr10:48397062-48397527 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 117

Conread position: 16-480
Cow position: chr10:39877376-39877836 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 31

Conread position: 17-427
Cow position: chr10:6844471-6844872 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 269
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 29, 41

Conread position: 17-485
Cow position: chr10:39440203-39439734 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 196

Conread position: 18-505
Cow position: chr10:53485192-53485677 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 349
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 32, 108

Conread position: 19-485
Cow position: chr10:16819204-16819672 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 316
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 202

Conread position: 25-502
Cow position: chr10:16927715-16927229 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 250

Conread position: 26-462
Cow position: chr10:29100683-29101124 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 29

Conread position: 28-370
Cow position: chr10:49186457-49186790 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 235
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 147, 108

Conread position: 31-505
Cow position: chr10:29010652-29011111 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 73

Conread position: 37-485
Cow position: chr10:29722026-29722472 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 89

Conread position: 53-310
Cow position: chr10:4997308-4997569 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 16, 160

Conread position: 55-410
Cow position: chr10:50313651-50313298 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 237
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 175, 64

Conread position: 84-485
Cow position: chr10:16478717-16478324 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 128

Conread position: 87-490
Cow position: chr10:19494305-19494711 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 128

Conread position: 91-473
Cow position: chr10:6258516-6258897 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 53

Conread position: 91-485
Cow position: chr10:8292018-8291628 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 114

Conread position: 102-485
Cow position: chr10:29109021-29109404 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 24

Conread position: 103-484
Cow position: chr10:39778167-39778548 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 24

Conread position: 104-376
Cow position: chr10:21451382-21451107 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 203
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 135, 126

Conread position: 109-353
Cow position: chr10:48169386-48169141 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 132, 103

Conread position: 118-487
Cow position: chr10:19721159-19721521 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 253
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 211, 32

Conread position: 122-400
Cow position: chr10:38176903-38176631 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 187
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 108, 12

Conread position: 134-414
Cow position: chr10:7509994-7510278 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 215
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 91, 58

Conread position: 140-498
Cow position: chr10:32828804-32828440 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 253
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 52, 174

Conread position: 172-448
Cow position: chr10:14844651-14844374 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 68, 32

Conread position: 238-503
Cow position: chr10:44707790-44708051 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 26, 31

Conread position: 239-485
Cow position: chr10:7280279-7280523 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 115, 73

Conread position: 239-505
Cow position: chr10:46184271-46184006 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 182
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 97, 212

Conread position: 244-502
Cow position: chr10:47908748-47908499 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 21, 29

Conread position: 296-444
Cow position: chr10:11822517-11822367 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 66, 11

Show alignments to all cow chromosomes.