Cow genome map

Conread name: Pig3-SRG8027B03

Conread position: 1-339
Cow position: chr15:18022368-18022705 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 249
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 6, 131

Conread position: 1-459
Cow position: chr15:8810668-8811116 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 274

Conread position: 1-485
Cow position: chr15:4726851-4726364 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 316

Conread position: 1-502
Cow position: chr15:20412243-20411738 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 68

Conread position: 2-311
Cow position: chr15:6487149-6486848 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 82

Conread position: 4-294
Cow position: chr15:32847060-32847351 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 190
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 186

Conread position: 4-295
Cow position: chr15:50148976-50148682 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 8

Conread position: 4-310
Cow position: chr15:12419063-12419371 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 123

Conread position: 4-354
Cow position: chr15:16190126-16190478 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-432
Cow position: chr15:4080592-4081022 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 8

Conread position: 4-441
Cow position: chr15:1783984-1783534 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 159

Conread position: 4-444
Cow position: chr15:35844632-35844205 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 48

Conread position: 4-447
Cow position: chr15:6627214-6626753 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 69

Conread position: 4-484
Cow position: chr15:4687375-4686892 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 192

Conread position: 4-484
Cow position: chr15:32492238-32492720 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 147

Conread position: 4-485
Cow position: chr15:4653022-4652532 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 209

Conread position: 4-485
Cow position: chr15:6154287-6154764 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 136

Conread position: 4-485
Cow position: chr15:6280110-6279639 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 89

Conread position: 4-485
Cow position: chr15:7838914-7838431 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 270

Conread position: 4-485
Cow position: chr15:10477885-10478363 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 208

Conread position: 4-485
Cow position: chr15:17036021-17036495 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 93

Conread position: 4-485
Cow position: chr15:26157476-26156996 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 34

Conread position: 4-485
Cow position: chr15:31360507-31360026 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 268

Conread position: 4-485
Cow position: chr15:35751654-35752143 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 205

Conread position: 4-488
Cow position: chr15:21451325-21450847 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 8

Conread position: 4-490
Cow position: chr15:107646-107159 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 199

Conread position: 4-490
Cow position: chr15:2646003-2646491 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 214

Conread position: 4-490
Cow position: chr15:7235954-7235483 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 43

Conread position: 4-490
Cow position: chr15:7564643-7564155 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-490
Cow position: chr15:9002580-9003065 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 116

Conread position: 4-490
Cow position: chr15:18266116-18266617 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 191

Conread position: 4-493
Cow position: chr15:3259675-3260168 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 60

Conread position: 4-493
Cow position: chr15:35737440-35736948 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 123

Conread position: 4-494
Cow position: chr15:42531564-42531067 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 209

Conread position: 4-501
Cow position: chr15:4814232-4813729 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 95

Conread position: 4-502
Cow position: chr15:2078290-2077793 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 136

Conread position: 4-502
Cow position: chr15:3890548-3890052 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 66

Conread position: 4-502
Cow position: chr15:6382514-6383013 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 217

Conread position: 4-502
Cow position: chr15:20354959-20355450 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 51

Conread position: 4-502
Cow position: chr15:25205362-25205864 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 129

Conread position: 4-502
Cow position: chr15:35646047-35646538 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 103

Conread position: 4-502
Cow position: chr15:50122293-50122791 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-504
Cow position: chr15:32066964-32067467 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 19

Conread position: 4-505
Cow position: chr15:5009983-5010487 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 213

Conread position: 4-505
Cow position: chr15:12365074-12364582 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 89

Conread position: 4-505
Cow position: chr15:24287829-24288334 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 111

Conread position: 4-509
Cow position: chr15:2926931-2926440 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 347
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 42, 78

Conread position: 6-323
Cow position: chr15:2212870-2213189 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 6

Conread position: 6-441
Cow position: chr15:31859307-31859753 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 6

Conread position: 6-485
Cow position: chr15:53300099-53299628 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 6

Conread position: 6-493
Cow position: chr15:53410531-53410060 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 6

Conread position: 6-500
Cow position: chr15:7546515-7546020 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 6

Conread position: 6-502
Cow position: chr15:6590473-6590976 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 6

Conread position: 11-490
Cow position: chr15:6562225-6561745 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 202

Conread position: 11-490
Cow position: chr15:11292804-11293282 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 12-375
Cow position: chr15:38982299-38981933 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 46

Conread position: 12-414
Cow position: chr15:9431571-9431169 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 115

Conread position: 12-490
Cow position: chr15:33123017-33122536 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 201

Conread position: 12-502
Cow position: chr15:59298-58796 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 271

Conread position: 15-296
Cow position: chr15:32513714-32513995 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 61, 7

Conread position: 16-309
Cow position: chr15:3789318-3789028 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 33, 57

Conread position: 18-485
Cow position: chr15:53339849-53339385 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 8

Conread position: 19-485
Cow position: chr15:8059597-8059126 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 109

Conread position: 21-328
Cow position: chr15:17397372-17397057 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 26, 259

Conread position: 21-421
Cow position: chr15:43086-42681 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 289
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 184

Conread position: 28-485
Cow position: chr15:44301482-44301944 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 190

Conread position: 39-485
Cow position: chr15:1768440-1767997 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 177

Conread position: 40-441
Cow position: chr15:24795428-24795020 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 174

Conread position: 50-490
Cow position: chr15:2587841-2588289 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 231

Conread position: 53-502
Cow position: chr15:18331242-18331693 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 170

Conread position: 79-490
Cow position: chr15:41659737-41659326 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 133

Conread position: 83-352
Cow position: chr15:25070436-25070704 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 159
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 138, 61

Conread position: 83-505
Cow position: chr15:13389764-13390184 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 20

Conread position: 84-402
Cow position: chr15:20240310-20240628 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 204
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 242, 148

Conread position: 88-480
Cow position: chr15:4672994-4672601 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 245
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 97, 108

Conread position: 91-493
Cow position: chr15:8698384-8698778 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 92

Conread position: 92-348
Cow position: chr15:44072235-44071978 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 150, 111

Conread position: 104-432
Cow position: chr15:19395409-19395745 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 229
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 95

Conread position: 112-481
Cow position: chr15:41219485-41219859 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 259
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 13, 34

Conread position: 113-503
Cow position: chr15:4927917-4927509 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 283
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 349

Conread position: 114-502
Cow position: chr15:1298996-1299407 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 286
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 117, 88

Conread position: 115-375
Cow position: chr15:40102575-40102312 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 120, 19

Conread position: 121-490
Cow position: chr15:35898247-35898618 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 91

Conread position: 125-490
Cow position: chr15:28488631-28488994 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 116, 77

Conread position: 133-485
Cow position: chr15:14580845-14581201 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 281

Conread position: 159-488
Cow position: chr15:14575815-14576161 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 248
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 81, 47

Conread position: 173-476
Cow position: chr15:51613612-51613311 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 219
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 56, 31

Conread position: 185-490
Cow position: chr15:4766655-4766349 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 41, 27

Conread position: 186-420
Cow position: chr15:4823894-4823658 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 54, 26

Conread position: 196-432
Cow position: chr15:4963066-4962828 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 160
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 23, 77

Conread position: 208-485
Cow position: chr15:2412017-2412293 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 103

Conread position: 208-485
Cow position: chr15:9911793-9912069 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 197
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 67

Conread position: 216-485
Cow position: chr15:24296521-24296253 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 21, 59

Conread position: 225-490
Cow position: chr15:4197888-4197625 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 8, 46

Conread position: 229-501
Cow position: chr15:17216737-17217005 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 186
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 136, 73

Conread position: 237-502
Cow position: chr15:1833231-1833498 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 27, 32

Conread position: 239-485
Cow position: chr15:51219130-51218886 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 25, 31

Conread position: 239-490
Cow position: chr15:6614127-6613880 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 31

Conread position: 239-490
Cow position: chr15:17077158-17077405 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 26, 31

Conread position: 239-502
Cow position: chr15:25653654-25653926 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 194
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 26, 31

Conread position: 253-479
Cow position: chr15:53314090-53313866 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 83, 53

Conread position: 263-490
Cow position: chr15:32712618-32712395 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 100, 6

Conread position: 314-471
Cow position: chr15:50148419-50148264 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 69, 75

Show alignments to all cow chromosomes.