Cow genome map

Conread name: Pig3-SRG8027B03

Conread position: 1-297
Cow position: chr16:5633990-5634282 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 8, 129

Conread position: 1-311
Cow position: chr16:16992347-16992036 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 49, 72

Conread position: 1-400
Cow position: chr16:44866153-44866554 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 272
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 47

Conread position: 1-485
Cow position: chr16:10439560-10439078 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 120

Conread position: 1-485
Cow position: chr16:12536645-12537128 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 140

Conread position: 1-485
Cow position: chr16:23534608-23535081 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 82

Conread position: 1-485
Cow position: chr16:40294859-40295341 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 275

Conread position: 1-485
Cow position: chr16:41572707-41572209 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 206

Conread position: 1-493
Cow position: chr16:37479549-37480045 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 205

Conread position: 1-502
Cow position: chr16:1959322-1959817 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 126

Conread position: 2-485
Cow position: chr16:4847626-4848067 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 341
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 48, 10

Conread position: 4-310
Cow position: chr16:37451772-37452081 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 116

Conread position: 4-351
Cow position: chr16:4799414-4799760 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 258
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 46, 120

Conread position: 4-364
Cow position: chr16:20200429-20200065 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 8

Conread position: 4-373
Cow position: chr16:16239992-16240363 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 123

Conread position: 4-432
Cow position: chr16:23250681-23251099 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 267

Conread position: 4-432
Cow position: chr16:46630881-46630452 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 253

Conread position: 4-436
Cow position: chr16:51039643-51039203 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 123

Conread position: 4-439
Cow position: chr16:41563685-41563234 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 201

Conread position: 4-441
Cow position: chr16:34531590-34531148 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-466
Cow position: chr16:3828032-3828501 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 32

Conread position: 4-466
Cow position: chr16:43845918-43846375 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 58

Conread position: 4-479
Cow position: chr16:32937822-32937348 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 331
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 20, 140

Conread position: 4-484
Cow position: chr16:10798449-10797985 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 324
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 49

Conread position: 4-484
Cow position: chr16:29048326-29047843 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 271

Conread position: 4-485
Cow position: chr16:2481846-2482315 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 199

Conread position: 4-485
Cow position: chr16:14664523-14664994 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 123

Conread position: 4-485
Cow position: chr16:15186375-15185899 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 123

Conread position: 4-485
Cow position: chr16:15568556-15568077 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 123

Conread position: 4-485
Cow position: chr16:23671999-23671519 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 160

Conread position: 4-485
Cow position: chr16:25456163-25456661 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 157

Conread position: 4-485
Cow position: chr16:43895966-43896442 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 123

Conread position: 4-485
Cow position: chr16:54324026-54324515 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 270

Conread position: 4-489
Cow position: chr16:7675160-7675646 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 78

Conread position: 4-489
Cow position: chr16:49220620-49221100 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 27

Conread position: 4-490
Cow position: chr16:5118716-5119203 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-490
Cow position: chr16:5527093-5527569 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 110

Conread position: 4-490
Cow position: chr16:5663141-5662655 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 8

Conread position: 4-490
Cow position: chr16:27594810-27594323 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 4-493
Cow position: chr16:5891300-5890810 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 210

Conread position: 4-501
Cow position: chr16:18617824-18618322 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 314

Conread position: 4-502
Cow position: chr16:1861546-1861033 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 127

Conread position: 4-502
Cow position: chr16:25086914-25086410 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 192

Conread position: 4-502
Cow position: chr16:25442928-25442427 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 125

Conread position: 4-502
Cow position: chr16:27732076-27732584 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 273

Conread position: 6-327
Cow position: chr16:16538095-16537779 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 6

Conread position: 6-452
Cow position: chr16:17948951-17949400 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 6

Conread position: 6-471
Cow position: chr16:20192875-20193338 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 6

Conread position: 6-502
Cow position: chr16:33831-33326 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 6

Conread position: 7-328
Cow position: chr16:22800378-22800697 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 9

Conread position: 11-309
Cow position: chr16:42746929-42747227 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 37

Conread position: 11-328
Cow position: chr16:20641478-20641159 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 263

Conread position: 11-490
Cow position: chr16:2237478-2237950 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 42

Conread position: 11-493
Cow position: chr16:47627368-47627841 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 11-502
Cow position: chr16:1433486-1432987 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 129

Conread position: 12-475
Cow position: chr16:49233208-49233662 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 321
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 35, 128

Conread position: 12-491
Cow position: chr16:27822962-27823434 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 25

Conread position: 12-502
Cow position: chr16:28169027-28169524 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 201

Conread position: 19-502
Cow position: chr16:23809647-23809158 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 264

Conread position: 19-505
Cow position: chr16:41753326-41753815 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 71

Conread position: 26-484
Cow position: chr16:3331211-3330753 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 128

Conread position: 28-505
Cow position: chr16:42735324-42735784 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 28

Conread position: 30-309
Cow position: chr16:24803821-24803562 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 196
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 8

Conread position: 31-500
Cow position: chr16:20203248-20202772 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 89

Conread position: 32-497
Cow position: chr16:25934445-25933995 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 322
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 18, 67

Conread position: 39-485
Cow position: chr16:9210195-9209755 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 298
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 11, 131

Conread position: 45-483
Cow position: chr16:18497056-18497495 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 37

Conread position: 48-485
Cow position: chr16:27298901-27299327 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 301
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 190, 79

Conread position: 52-502
Cow position: chr16:51085405-51084955 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 67

Conread position: 53-490
Cow position: chr16:3087951-3088388 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 159

Conread position: 56-395
Cow position: chr16:25261725-25261381 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 249
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 16, 150

Conread position: 68-502
Cow position: chr16:19778413-19778851 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 145

Conread position: 79-381
Cow position: chr16:52625535-52625236 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 214
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 146, 30

Conread position: 94-484
Cow position: chr16:1566253-1566633 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 281
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 137, 9

Conread position: 99-442
Cow position: chr16:44899458-44899792 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 116

Conread position: 116-481
Cow position: chr16:7310443-7310810 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 238
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 96, 119

Conread position: 118-458
Cow position: chr16:25740448-25740108 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 237
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 72, 33

Conread position: 129-485
Cow position: chr16:2409758-2410109 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 246
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 101, 5

Conread position: 132-485
Cow position: chr16:5872066-5871707 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 255
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 109, 72

Conread position: 134-505
Cow position: chr16:838484-838113 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 258
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 96, 139

Conread position: 140-351
Cow position: chr16:55875157-55875357 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 159-426
Cow position: chr16:31588027-31588302 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 178
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 71, 258

Conread position: 159-490
Cow position: chr16:10374456-10374780 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 82, 53

Conread position: 235-485
Cow position: chr16:5485791-5485546 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 29, 35

Conread position: 239-485
Cow position: chr16:26979167-26978932 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 116, 28

Conread position: 239-490
Cow position: chr16:28196177-28196425 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 26, 31

Conread position: 239-505
Cow position: chr16:41762880-41762617 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 192, 26

Conread position: 244-480
Cow position: chr16:16270078-16270310 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 159
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 111, 31

Conread position: 263-491
Cow position: chr16:19149563-19149786 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 88, 6

Conread position: 294-505
Cow position: chr16:39824930-39824722 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 67, 21

Show alignments to all cow chromosomes.